Guide to the Human Genome
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Name: C18orf54 Sequence: fasta or formatted (372aa) NCBI GI: 190684667
Description:

hypothetical protein LOC162681

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         16           1
 C cysteine            2.4          9           1
 D aspartate           8.1         30           2
 E glutamate           4.8         18           2
 F phenylalanine       3.8         14           1
 G glycine             4.8         18           2
 H histidine           3.0         11           2
 I isoleucine          4.3         16           1
 K lysine              9.4         35           2
 L leucine             9.1         34           2
 M methionine          2.2          8           1
 N asparagine          6.7         25           2
 P proline             4.6         17           1
 Q glutamine           4.8         18           2
 R arginine            4.6         17           2
 S serine             11.8         44           2
 T threonine           5.1         19           2
 V valine              3.5         13           1
 W tryptophan          0.3          1           1
 Y tyrosine            2.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC162681 
HIPK3                 0.026   homeodomain interacting protein kinase 3 isoform 2 ...
C17orf57              0.016   hypothetical protein LOC124989 
HIPK3                 0.011   homeodomain interacting protein kinase 3 isoform 1 ...
NCAPD2                0.011   non-SMC condensin I complex, subunit D2 
ZMYND8                0.010   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.010   zinc finger, MYND-type containing 8 isoform b 
MYH1                  0.010   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.010   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.010   myosin, heavy chain 2, skeletal muscle, adult [Homo...
ZNF292                0.008   zinc finger protein 292 
MYH7                  0.008   myosin, heavy chain 7, cardiac muscle, beta 
PHF3                  0.008   PHD finger protein 3 
CGN                   0.007   cingulin 
PPP2R3A               0.005   protein phosphatase 2, regulatory subunit B'', alpha...
ATAD5                 0.005   ATPase family, AAA domain containing 5 
PNPLA8                0.005   patatin-like phospholipase domain containing 8 [Homo...
ATP10A                0.005   ATPase, class V, type 10A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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