Guide to the Human Genome
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Search of human proteins with 17432433

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|17432433 rififylin [Homo sapiens]
         (363 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|62865649 rififylin [Homo sapiens]                                  755   0.0  
gi|17432433 rififylin [Homo sapiens]                                  755   0.0  
gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens]           280   1e-75
gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]           280   1e-75
gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo sap...    60   2e-09
gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo sa...    59   9e-09
gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo sap...    59   9e-09
gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens]         58   1e-08
gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo sa...    58   2e-08
gi|217416388 neuralized homolog 1B [Homo sapiens]                      55   1e-07
gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1 ...    55   1e-07
gi|11545910 livin inhibitor of apoptosis isoform beta [Homo sapi...    51   2e-06
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap...    51   2e-06
gi|38788243 myosin regulatory light chain interacting protein [H...    50   4e-06
gi|30348954 mindbomb homolog 1 [Homo sapiens]                          49   7e-06
gi|223278368 neuralized-like [Homo sapiens]                            48   2e-05
gi|53729363 leucine rich repeat and sterile alpha motif containi...    48   2e-05
gi|53729361 leucine rich repeat and sterile alpha motif containi...    48   2e-05
gi|53729359 leucine rich repeat and sterile alpha motif containi...    48   2e-05
gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens]    47   3e-05
gi|47716512 mex-3 homolog B [Homo sapiens]                             45   8e-05
gi|5729765 cell growth regulator with ring finger domain 1 [Homo...    45   8e-05
gi|21264330 mindbomb homolog 2 [Homo sapiens]                          45   1e-04
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]     44   2e-04
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]     44   2e-04
gi|147902746 MEX3A protein [Homo sapiens]                              44   2e-04
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]       43   4e-04
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]       43   4e-04
gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens]         43   5e-04
gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens]         43   5e-04

>gi|62865649 rififylin [Homo sapiens]
          Length = 363

 Score =  755 bits (1950), Expect = 0.0
 Identities = 363/363 (100%), Positives = 363/363 (100%)

Query: 1   MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK 60
           MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK
Sbjct: 1   MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK 60

Query: 61  QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST 120
           QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST
Sbjct: 61  QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST 120

Query: 121 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS 180
           EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS
Sbjct: 121 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS 180

Query: 181 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS 240
           SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS
Sbjct: 181 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS 240

Query: 241 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE 300
           LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE
Sbjct: 241 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE 300

Query: 301 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV 360
           DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV
Sbjct: 301 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV 360

Query: 361 FRS 363
           FRS
Sbjct: 361 FRS 363


>gi|17432433 rififylin [Homo sapiens]
          Length = 363

 Score =  755 bits (1950), Expect = 0.0
 Identities = 363/363 (100%), Positives = 363/363 (100%)

Query: 1   MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK 60
           MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK
Sbjct: 1   MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK 60

Query: 61  QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST 120
           QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST
Sbjct: 61  QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST 120

Query: 121 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS 180
           EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS
Sbjct: 121 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS 180

Query: 181 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS 240
           SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS
Sbjct: 181 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS 240

Query: 241 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE 300
           LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE
Sbjct: 241 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE 300

Query: 301 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV 360
           DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV
Sbjct: 301 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV 360

Query: 361 FRS 363
           FRS
Sbjct: 361 FRS 363


>gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens]
          Length = 373

 Score =  280 bits (716), Expect = 1e-75
 Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 42/385 (10%)

Query: 1   MWATCCNWF-------CLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPS--CKSCG 51
           MWA+CC           + GQ        G   +   NP +S++P      P+  CK+CG
Sbjct: 9   MWASCCGLLNEVMGTGAVRGQQSAFAGATGP-FRFTPNPEFSTYPPAATEGPNIVCKACG 67

Query: 52  AHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRD 111
             F+   +K  C DCKK+FC  CS    N  R C  C   + TAFQR +LM++KVKDLR 
Sbjct: 68  LSFSVFRKKHVCCDCKKDFCSVCSVLQEN-LRRCSTCHLLQETAFQRPQLMRLKVKDLRQ 126

Query: 112 YLSLHDISTEMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVP 171
           YL L +I  + CREKE+LV LVL    + S++D    S+L+    +  +F T+   S   
Sbjct: 127 YLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMD-TSSLNSSRSQTSSFFTRSFFSNY- 184

Query: 172 PTSPNLPSSSAQ---------ATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAED 222
            T+P+   SS Q         + S  PAQVQ ++  + +   D ++    +      AED
Sbjct: 185 -TAPSATMSSFQGELMDGDQTSRSGVPAQVQ-SEITSANTEDDDDDDDEDDDDEEENAED 242

Query: 223 ETQSIDSEDSFVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERV 282
               +  E       RASLSDL+ L+D+EG++VRQLKEILARNFVNY GCCEKWEL+E+V
Sbjct: 243 RNPGLSKERV-----RASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKV 297

Query: 283 TRLYKD----QKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT 338
            RLYK+    QK     +   +++         +++LC+ICMD+ IDCVLLECGHMVTCT
Sbjct: 298 NRLYKENEENQKSYGERLQLQDEE---------DDSLCRICMDAVIDCVLLECGHMVTCT 348

Query: 339 KCGKRMNECPICRQYVIRAVHVFRS 363
           KCGKRM+ECPICRQYV+RAVHVF+S
Sbjct: 349 KCGKRMSECPICRQYVVRAVHVFKS 373


>gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]
          Length = 372

 Score =  280 bits (716), Expect = 1e-75
 Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 42/385 (10%)

Query: 1   MWATCCNWF-------CLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPS--CKSCG 51
           MWA+CC           + GQ        G   +   NP +S++P      P+  CK+CG
Sbjct: 8   MWASCCGLLNEVMGTGAVRGQQSAFAGATGP-FRFTPNPEFSTYPPAATEGPNIVCKACG 66

Query: 52  AHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRD 111
             F+   +K  C DCKK+FC  CS    N  R C  C   + TAFQR +LM++KVKDLR 
Sbjct: 67  LSFSVFRKKHVCCDCKKDFCSVCSVLQEN-LRRCSTCHLLQETAFQRPQLMRLKVKDLRQ 125

Query: 112 YLSLHDISTEMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVP 171
           YL L +I  + CREKE+LV LVL    + S++D    S+L+    +  +F T+   S   
Sbjct: 126 YLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMD-TSSLNSSRSQTSSFFTRSFFSNY- 183

Query: 172 PTSPNLPSSSAQ---------ATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAED 222
            T+P+   SS Q         + S  PAQVQ ++  + +   D ++    +      AED
Sbjct: 184 -TAPSATMSSFQGELMDGDQTSRSGVPAQVQ-SEITSANTEDDDDDDDEDDDDEEENAED 241

Query: 223 ETQSIDSEDSFVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERV 282
               +  E       RASLSDL+ L+D+EG++VRQLKEILARNFVNY GCCEKWEL+E+V
Sbjct: 242 RNPGLSKERV-----RASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKV 296

Query: 283 TRLYKD----QKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT 338
            RLYK+    QK     +   +++         +++LC+ICMD+ IDCVLLECGHMVTCT
Sbjct: 297 NRLYKENEENQKSYGERLQLQDEE---------DDSLCRICMDAVIDCVLLECGHMVTCT 347

Query: 339 KCGKRMNECPICRQYVIRAVHVFRS 363
           KCGKRM+ECPICRQYV+RAVHVF+S
Sbjct: 348 KCGKRMSECPICRQYVVRAVHVFKS 372


>gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo
           sapiens]
          Length = 618

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 14/102 (13%)

Query: 269 YKGCCEKWELMERVTRLYKD---QKGLQHLVSGAEDQNGGAVPSGL----EENLCKICMD 321
           +K C     L E  + LYK+    K ++++ +  ED +G ++   L    EE  CK+CMD
Sbjct: 524 FKNC-----LKEIDSTLYKNLFVDKNMKYIPT--EDVSGLSLEEQLRRLQEERTCKVCMD 576

Query: 322 SPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
             +  V + CGH+V C +C   + +CPICR  +   V  F S
Sbjct: 577 KEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 618


>gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo
           sapiens]
          Length = 604

 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
           EE  CK+CMD  +  V + CGH+V C  C   + +CPICR  +   V  F S
Sbjct: 553 EERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 604


>gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo
           sapiens]
          Length = 604

 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
           EE  CK+CMD  +  V + CGH+V C  C   + +CPICR  +   V  F S
Sbjct: 553 EERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 604


>gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens]
          Length = 236

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 24/52 (46%), Positives = 32/52 (61%)

Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
           EE LCKICMD  I  V + CGH+VTC +C + ++ CP+C   +     VF S
Sbjct: 185 EEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAVDRCPMCSAVIDFKQRVFMS 236


>gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo
           sapiens]
          Length = 497

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
           EE LCKICMD  I  V + CGH+VTC +C + +++CP+C   +     +F S
Sbjct: 446 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 497


>gi|217416388 neuralized homolog 1B [Homo sapiens]
          Length = 555

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 308 PSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNE-----CPICRQYVIRAVHVFR 362
           P+G++   C +C D  +D V+  CGHM  C  CG R+       CPICR+ +   + ++R
Sbjct: 495 PAGIKNGECTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIYR 554


>gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1
           [Homo sapiens]
          Length = 352

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 313 ENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNE---CPICRQYVIRAVHVFRS 363
           ++ C +C+ S   CV LECGH+ +CT+C + + E   CPICRQ + R + ++ S
Sbjct: 299 KSACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPICRQAITRVIPLYNS 352


>gi|11545910 livin inhibitor of apoptosis isoform beta [Homo
           sapiens]
          Length = 280

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
           EE  CK+C+D  +  V + CGH+V C +C   +  CPICR  V   V  F S
Sbjct: 230 EERTCKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPVRSRVRTFLS 280


>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
           sapiens]
          Length = 298

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
           EE  CK+C+D  +  V + CGH+V C +C   +  CPICR  V   V  F S
Sbjct: 248 EERTCKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPVRSRVRTFLS 298


>gi|38788243 myosin regulatory light chain interacting protein [Homo
           sapiens]
          Length = 445

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVF 361
           E  LC +C +  I+     CGH V C  C  ++  CP+CR  V    HV+
Sbjct: 383 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 432


>gi|30348954 mindbomb homolog 1 [Homo sapiens]
          Length = 1006

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 312  EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVF 361
            E+ +C +C+D   + + L CGH  TC  CG RM+ECPICR+ + R + ++
Sbjct: 959  EQTMCPVCLDRLKNMIFL-CGHG-TCQLCGDRMSECPICRKAIERRILLY 1006



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 273 CEKWELMERVTRLYKDQKGLQHLVSGAEDQNGGAVPSGLEENL--CKICMDSPIDCVLLE 330
           C    L + + + +K++      VSG       ++ S   E L  C +C D   D +   
Sbjct: 780 CPDPNLCKALAKCHKEK------VSGQVGSRSPSMISNDSETLEECMVCSDMKRDTLFGP 833

Query: 331 CGHMVTCTKCGKRMNECPICRQYV 354
           CGH+ TC+ C  R+ +C IC++ V
Sbjct: 834 CGHIATCSLCSPRVKKCLICKEQV 857



 Score = 39.3 bits (90), Expect = 0.006
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 316 CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAV 358
           C +C D     +   CGHM  C  C   M +C  CR  V R V
Sbjct: 866 CVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRV 908


>gi|223278368 neuralized-like [Homo sapiens]
          Length = 574

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 316 CKICMDSPIDCVLLECGHMVTCTKCGKRMNE-----CPICRQYVIRAVHVFRS 363
           C IC +  +D V+  CGHM  C  CG R+ +     CPICR+ +   +  +RS
Sbjct: 521 CTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYRS 573


>gi|53729363 leucine rich repeat and sterile alpha motif containing
           1 [Homo sapiens]
          Length = 723

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 300 EDQNGGAVPSGLEENL--CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRA 357
           E     A P+ LE     C +C++     + L CGH+  C +C + +  CP+CRQ + + 
Sbjct: 657 ESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQR 716

Query: 358 VHVFRS 363
           + ++ S
Sbjct: 717 LRIYHS 722


>gi|53729361 leucine rich repeat and sterile alpha motif containing
           1 [Homo sapiens]
          Length = 723

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 300 EDQNGGAVPSGLEENL--CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRA 357
           E     A P+ LE     C +C++     + L CGH+  C +C + +  CP+CRQ + + 
Sbjct: 657 ESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQR 716

Query: 358 VHVFRS 363
           + ++ S
Sbjct: 717 LRIYHS 722


>gi|53729359 leucine rich repeat and sterile alpha motif containing
           1 [Homo sapiens]
          Length = 723

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 300 EDQNGGAVPSGLEENL--CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRA 357
           E     A P+ LE     C +C++     + L CGH+  C +C + +  CP+CRQ + + 
Sbjct: 657 ESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQR 716

Query: 358 VHVFRS 363
           + ++ S
Sbjct: 717 LRIYHS 722


>gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens]
          Length = 576

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 311 LEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAV 358
           + EN C +C D   D  L  CGH   C  C  ++  CP+CR+ ++  +
Sbjct: 522 IRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRI 569


>gi|47716512 mex-3 homolog B [Homo sapiens]
          Length = 569

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 316 CKICMDSPIDCVLLECGHMVTCTKCGKRM-----NECPICRQYVIRAVHVF 361
           C +C +S +   L+ CGH + C +C  R+      ECP+C   V +A+ +F
Sbjct: 518 CSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIF 568


>gi|5729765 cell growth regulator with ring finger domain 1 [Homo
           sapiens]
          Length = 332

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 308 PSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYV 354
           PS      C +C +  ++ VLL C H   C  C K   +CP+CRQ+V
Sbjct: 266 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFV 312


>gi|21264330 mindbomb homolog 2 [Homo sapiens]
          Length = 1013

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 311  LEENL-CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVF 361
            +EE + C IC+DS I  V  +CGH   C  CG  ++ CPICRQ +   + +F
Sbjct: 963  MEERITCPICIDSHIRLVF-QCGHGA-CAPCGSALSACPICRQPIRDRIQIF 1012



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 305 GAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYV 354
           GA P G E   C +C +  +  +   C H   C +C +RM +C  C+  V
Sbjct: 880 GAAP-GPEAAECLVCSELALLVLFSPCQHRTVCEECARRMKKCIRCQVVV 928


>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
          Length = 651

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 316 CKICMDSPIDCVLLECGHMVTCTKC-----GKRMNECPICRQYVIRAVHVF 361
           C +C +  +   L+ CGH + C  C     GK   ECP CR    +A+H+F
Sbjct: 600 CVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHIF 650


>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
          Length = 659

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)

Query: 303 NGGAVPSGLEENL----CKICMDSPIDCVLLECGHMVTCTKCG-----KRMNECPICRQY 353
           NGG+  S   E+     C IC ++ +   L+ CGH + C +C      KR   CP+C+  
Sbjct: 591 NGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCMECANKICEKRTPSCPVCQTA 650

Query: 354 VIRAVHV 360
           V +A+ +
Sbjct: 651 VTQAIQI 657


>gi|147902746 MEX3A protein [Homo sapiens]
          Length = 520

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 296 VSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRM-----NECPIC 350
           + G     GG + S      C +C +S +   L+ CGH + C +C  R+      ECP+C
Sbjct: 449 LQGFSKLGGGGLRSPGGGRDCMVCFESEVTAALVPCGHNLFCMECAVRICERTDPECPVC 508

Query: 351 RQYVIRAVHVF 361
                +A+ +F
Sbjct: 509 HITATQAIRIF 519


>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
          Length = 788

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 89  QRFRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEE----LVLLVLGQQPVISQED 144
           Q+F+A   Q+++L + + +  +  + LH  + +  +++++    +  L L QQ    Q+ 
Sbjct: 198 QQFQAVVQQQQQLQQQQQQQ-QHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQ 256

Query: 145 RTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSSSAQATSVPPAQVQENQQANGHVS- 203
           + +         +QQA   QP     P   P  P S A      P Q+Q+      H   
Sbjct: 257 QQQ---------QQQALQAQPPIQQPPMQQPQPPPSQAL-----PQQLQQMHHTQHHQPP 302

Query: 204 -QDQEEPVYLESVARVPAEDETQSIDSEDSFVPGR 237
            Q Q+ PV     +++P + +TQ + S+   +PG+
Sbjct: 303 PQPQQPPVAQNQPSQLPPQSQTQPLVSQAQALPGQ 337


>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
          Length = 748

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 89  QRFRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEE----LVLLVLGQQPVISQED 144
           Q+F+A   Q+++L + + +  +  + LH  + +  +++++    +  L L QQ    Q+ 
Sbjct: 198 QQFQAVVQQQQQLQQQQQQQ-QHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQ 256

Query: 145 RTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSSSAQATSVPPAQVQENQQANGHVS- 203
           + +         +QQA   QP     P   P  P S A      P Q+Q+      H   
Sbjct: 257 QQQ---------QQQALQAQPPIQQPPMQQPQPPPSQAL-----PQQLQQMHHTQHHQPP 302

Query: 204 -QDQEEPVYLESVARVPAEDETQSIDSEDSFVPGR 237
            Q Q+ PV     +++P + +TQ + S+   +PG+
Sbjct: 303 PQPQQPPVAQNQPSQLPPQSQTQPLVSQAQALPGQ 337


>gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens]
          Length = 531

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 14/83 (16%)

Query: 277 ELMERVTRLYKDQKGLQHL----VSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECG 332
           ++++RV+ L ++  G+++        ++D+N          N C +C+    D ++L C 
Sbjct: 242 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSD------NSNECVVCLSDLRDTLILPCR 295

Query: 333 HMVTCTKCGKRM----NECPICR 351
           H+  CT C   +    N CPICR
Sbjct: 296 HLCLCTSCADTLRYQANNCPICR 318


>gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens]
          Length = 552

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 14/83 (16%)

Query: 277 ELMERVTRLYKDQKGLQHL----VSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECG 332
           ++++RV+ L ++  G+++        ++D+N          N C +C+    D ++L C 
Sbjct: 241 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSD------NSNECVVCLSDLRDTLILPCR 294

Query: 333 HMVTCTKCGKRM----NECPICR 351
           H+  CT C   +    N CPICR
Sbjct: 295 HLCLCTSCADTLRYQANNCPICR 317


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,355,484
Number of Sequences: 37866
Number of extensions: 826488
Number of successful extensions: 4797
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 4496
Number of HSP's gapped (non-prelim): 458
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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