Guide to the Human Genome
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Name: RFFL Sequence: fasta or formatted (363aa) NCBI GI: 17432433
Description:

rififylin

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt mRNA [363aa] rififylin
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         21           1
 C cysteine            6.1         22           2
 D aspartate           5.0         18           1
 E glutamate           8.0         29           2
 F phenylalanine       3.0         11           1
 G glycine             5.2         19           2
 H histidine           1.9          7           1
 I isoleucine          2.5          9           1
 K lysine              4.4         16           2
 L leucine             8.8         32           2
 M methionine          3.0         11           1
 N asparagine          3.6         13           1
 P proline             6.9         25           3
 Q glutamine           7.2         26           2
 R arginine            5.8         21           2
 S serine              8.5         31           3
 T threonine           5.0         18           1
 V valine              6.6         24           1
 W tryptophan          0.8          3           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rififylin 
RFFL                  1.000   rififylin 
RNF34                 0.349   ring finger protein 34 isoform 1 
RNF34                 0.349   ring finger protein 34 isoform 2 
BIRC2                 0.048   baculoviral IAP repeat-containing protein 2 
BIRC3                 0.047   baculoviral IAP repeat-containing protein 3 
BIRC3                 0.047   baculoviral IAP repeat-containing protein 3 
BIRC8                 0.045   baculoviral IAP repeat-containing 8 
XIAP                  0.045   baculoviral IAP repeat-containing protein 4 
NEURL1B               0.041   neuralized homolog 1B 
MUL1                  0.041   mitochondrial ubiquitin ligase activator of NFKB 1 ...
BIRC7                 0.036   livin inhibitor of apoptosis isoform beta 
BIRC7                 0.036   livin inhibitor of apoptosis isoform alpha 
MYLIP                 0.034   myosin regulatory light chain interacting protein [H...
MIB1                  0.033   mindbomb homolog 1 
NEURL                 0.032   neuralized-like 
LRSAM1                0.032   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.032   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.032   leucine rich repeat and sterile alpha motif containi...
RSPRY1                0.030   ring finger and SPRY domain containing 1 
MEX3B                 0.027   mex-3 homolog B 
CGRRF1                0.027   cell growth regulator with ring finger domain 1 [Homo...
MIB2                  0.027   mindbomb homolog 2 
MEX3D                 0.026   ring finger and KH domain containing 1 
MEX3C                 0.026   ring finger and KH domain containing 2 
MEX3A                 0.026   MEX3A protein 
MED15                 0.025   mediator complex subunit 15 isoform a 
MED15                 0.025   mediator complex subunit 15 isoform b 
MGRN1                 0.025   mahogunin, ring finger 1 isoform 4 
MGRN1                 0.025   mahogunin, ring finger 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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