Search of human proteins with 169881277

Search of human proteins with 169881277

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169881277 PROP paired-like homeobox 1 [Homo sapiens]
         (226 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169881277 PROP paired-like homeobox 1 [Homo sapiens]               480   e-136
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...    99   2e-21
gi|7706659 paired related homeobox 2 [Homo sapiens]                    94   1e-19
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho...    93   2e-19
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]             92   3e-19
gi|14149760 orthopedia homeobox [Homo sapiens]                         92   3e-19
gi|24497589 aristaless related homeobox [Homo sapiens]                 92   4e-19
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]      91   1e-18
gi|46249382 paired-like homeobox 2a [Homo sapiens]                     90   2e-18
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap...    89   3e-18
gi|55743092 aristaless-like homeobox 4 [Homo sapiens]                  86   2e-17
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                 86   3e-17
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                  86   3e-17
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                  86   3e-17
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                  86   3e-17
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                  86   3e-17
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                   86   3e-17
gi|113204604 aristaless-like homeobox 3 [Homo sapiens]                 86   3e-17
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]    84   1e-16
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi...    84   1e-16
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]          83   2e-16
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                       83   2e-16
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                       83   2e-16
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                     83   2e-16
gi|189083681 paired box gene 6 isoform a [Homo sapiens]                83   2e-16
gi|4580424 paired box gene 6 isoform b [Homo sapiens]                  83   2e-16
gi|4505615 paired box gene 6 isoform a [Homo sapiens]                  83   2e-16
gi|4557489 cone-rod homeobox protein [Homo sapiens]                    83   2e-16
gi|34365783 visual system homeobox 2 [Homo sapiens]                    82   3e-16
gi|4826912 paired-like homeodomain 3 [Homo sapiens]                    82   3e-16

>gi|169881277 PROP paired-like homeobox 1 [Homo sapiens]
          Length = 226

 Score =  480 bits (1235), Expect = e-136
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MEAERRRQAEKPKKGRVGSNLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQG 60
           MEAERRRQAEKPKKGRVGSNLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQG
Sbjct: 1   MEAERRRQAEKPKKGRVGSNLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQG 60

Query: 61  GQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNR 120
           GQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNR
Sbjct: 61  GQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNR 120

Query: 121 RAKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHPYSHALPSQPS 180
           RAKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHPYSHALPSQPS
Sbjct: 121 RAKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHPYSHALPSQPS 180

Query: 181 TGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN 226
           TGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN
Sbjct: 181 TGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN 226


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 80/231 (34%), Positives = 106/231 (45%), Gaps = 25/231 (10%)

Query: 2   EAERRRQAEK--PKKGRVGSNLLPERHPATGTPTTTVDSSAPPC-------RRLPGAGGG 52
           E +RR  A    PK    GS   P   PA   P    ++  P C       R  PG   G
Sbjct: 62  ERDRRLGARPACPKAPEEGSEPSPPPAPA---PAPEYEAPRPYCPKEPGEARPSPGLPVG 118

Query: 53  RSRFSPQGGQRGRPHSR-RRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEA 111
            +    +  +  +P  + RR+RTTF+  QL +LE AF ++ YPD+++RE LA    L E 
Sbjct: 119 PATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEV 178

Query: 112 RIQVWFQNRRAKQRKQERSLLQPL-AHLSP-AAFSSFLPESTACPYSYAAPPPPVTCFPH 169
           R+QVWFQNRRAK R+QE+  +  +    SP  +FS   P +T  P   A P         
Sbjct: 179 RVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLG-AGPGSG----GG 233

Query: 170 PYSHALPSQ-----PSTGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPML 215
           P   ALP +     P  GG          + P     PA + P PPPPP L
Sbjct: 234 PAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFL 284


>gi|7706659 paired related homeobox 2 [Homo sapiens]
          Length = 253

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 60/151 (39%), Positives = 76/151 (50%), Gaps = 27/151 (17%)

Query: 45  RLPGAGGGRSRFSPQGGQ-----RG----RPHSRRRHRTTFSPVQLEQLESAFGRNQYPD 95
           R P  G   S  +PQ G+     RG    R   +RR+RTTF+  QL+ LE  F R  YPD
Sbjct: 71  REPSGGSSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPD 130

Query: 96  IWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLL------------------QPLAH 137
            + RE LAR   LSEAR+QVWFQNRRAK R+ ER++L                  QP+A 
Sbjct: 131 AFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYSQEAAIEQPVAP 190

Query: 138 LSPAAFSSFLPESTACPYSYAAPPPPVTCFP 168
              A    +L  + + PYS   P  P +  P
Sbjct: 191 RPTALSPDYLSWTASSPYSTVPPYSPGSSGP 221


>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
           sapiens]
          Length = 406

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 72/212 (33%), Positives = 99/212 (46%), Gaps = 40/212 (18%)

Query: 11  KPKKGRVGSNLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRGRPHSRR 70
           KP++ +    LL  +      P TTV+   P       A G ++   PQ      P  +R
Sbjct: 93  KPEQQQEEPPLLELKQEQEEPPQTTVEGPQP-------AEGPQTAEGPQP-----PERKR 140

Query: 71  RHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERS 130
           R RT F+  QL++LE+ F  +QYPD+ ARE LA    L+E R+QVWFQNRRAK ++ +R 
Sbjct: 141 RRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWKRNQRV 200

Query: 131 LLQPLAHLSPAAFSSFLPESTACPYSYAAPP-PPVTCFPHPYSHALPSQPSTGGAFALSH 189
           L+  L + + A  +  L       Y YAAP   P  C      H +P  P          
Sbjct: 201 LM--LRNTATADLAHPLDMFLGGAY-YAAPALDPALCV-----HLVPQLPR--------- 243

Query: 190 QSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEP 221
                 P + P P    P PP PPM+P+   P
Sbjct: 244 ------PPVLPVP----PMPPRPPMVPMPPRP 265



 Score = 27.7 bits (60), Expect = 8.3
 Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 15/88 (17%)

Query: 134 PLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPH--PYSHALPSQPSTGGAFALSHQS 191
           P+A + P  +    P  T  P +   P PP+   P   P +   P  P            
Sbjct: 299 PMAPVPP--WPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPG----- 351

Query: 192 EDWYPTLHPAPAGH--LPCPPPPPMLPL 217
               P + P P G    P PP PPM PL
Sbjct: 352 ----PPMAPLPPGPPMAPLPPGPPMAPL 375


>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
          Length = 325

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 5/115 (4%)

Query: 18  GSNLLPERHPAT--GTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRGRPHSRRRHRTT 75
           G+ LLP     T   TP +   S+  P ++ PG  GG +    Q GQ+     ++RHRT 
Sbjct: 54  GATLLPGEDITTVGSTPASLAVSAKDPDKQ-PGPQGGPN--PSQAGQQQGQQKQKRHRTR 110

Query: 76  FSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERS 130
           F+P QL +LE +F +  YPDI+ RE LA   GL+E+R+QVWFQNRRAK +K++++
Sbjct: 111 FTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKT 165


>gi|14149760 orthopedia homeobox [Homo sapiens]
          Length = 325

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 5/115 (4%)

Query: 18  GSNLLPERHPAT--GTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRGRPHSRRRHRTT 75
           G+ LLP     T   TP +   S+  P ++ PG  GG +    Q GQ+     ++RHRT 
Sbjct: 54  GATLLPGEDITTVGSTPASLAVSAKDPDKQ-PGPQGGPN--PSQAGQQQGQQKQKRHRTR 110

Query: 76  FSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERS 130
           F+P QL +LE +F +  YPDI+ RE LA   GL+E+R+QVWFQNRRAK +K++++
Sbjct: 111 FTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKT 165


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 92.0 bits (227), Expect = 4e-19
 Identities = 66/152 (43%), Positives = 84/152 (55%), Gaps = 18/152 (11%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR+RTTF+  QLE+LE AF +  YPD++ RE LA    L+EAR+QVWFQNRRAK RK+E
Sbjct: 328 QRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKRE 387

Query: 129 RSLLQ--PLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHPYSHALPSQPSTGGAFA 186
           ++  Q  P     P   S+  P S   PY  A+P PP     HP   AL S  +   A A
Sbjct: 388 KAGAQTHPPGLPFPGPLSATHPLS---PYLDASPFPP----HHP---ALDSAWTAAAAAA 437

Query: 187 LSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLS 218
            +      +P+L P P G    PP    L LS
Sbjct: 438 AAA-----FPSL-PPPPGSASLPPSGAPLGLS 463


>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
          Length = 326

 Score = 90.5 bits (223), Expect = 1e-18
 Identities = 45/88 (51%), Positives = 60/88 (68%), Gaps = 2/88 (2%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RRHRTTF+ +QLE+LE  F +  YPD++ RE LA  T L+EAR+QVWFQNRRAK RK+E
Sbjct: 132 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE 191

Query: 129 R--SLLQPLAHLSPAAFSSFLPESTACP 154
           R   + Q  +H +     S LP + + P
Sbjct: 192 RYGQIQQAKSHFAATYDISVLPRTDSYP 219


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 64/160 (40%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 55  RFSPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQ 114
           +F P+         +RR RTTF+  QL++LE  F    YPDI+ RE LA    L+EAR+Q
Sbjct: 76  KFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135

Query: 115 VWFQNRRAKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHPYSHA 174
           VWFQNRRAK RKQER+     A    AA ++   +  A   S        TC P P S A
Sbjct: 136 VWFQNRRAKFRKQERA-----ASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTA 190

Query: 175 -LPSQPSTGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPP 213
            LP  P+ G A      S    P+  P   G  P P P P
Sbjct: 191 SLPPPPAPGLA------SPRLSPSPLPVALGSGPGPGPGP 224


>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
           sapiens]
          Length = 184

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 57/136 (41%), Positives = 72/136 (52%), Gaps = 10/136 (7%)

Query: 47  PGAGGGRSRFSPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDT 106
           PG G          G+       RR+RTTF+  QL QLE AF  + YPD+++RE LA   
Sbjct: 5   PGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKV 64

Query: 107 GLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPP---P 163
            L E R+QVWFQNRRAK R+QER     L   S A  +  LPE+ A P  +A PP    P
Sbjct: 65  HLPEVRVQVWFQNRRAKWRRQER-----LESGSGAVAAPRLPEAPALP--FARPPAMSLP 117

Query: 164 VTCFPHPYSHALPSQP 179
           +  +  P   A+P  P
Sbjct: 118 LEPWLGPGPPAVPGLP 133


>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
          Length = 411

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 2/75 (2%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR+RTTF+  QLE+LE  F +  YPD++ARE LA  T L+EAR+QVWFQNRRAK RK+E
Sbjct: 214 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 273

Query: 129 R--SLLQPLAHLSPA 141
           R   + Q   H S A
Sbjct: 274 RFGQMQQVRTHFSTA 288


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 31/178 (17%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RTTF+  QLE+LE AF R  YPDI+ RE LA+   L+EAR+QVWF NRRA+ RKQ 
Sbjct: 218 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 277

Query: 129 -RSLLQPLAHLSPAAF-------------------SSFLPESTACPYSYA---APPPPVT 165
             + L    HL P  F                    + +P++ + P S      P PP T
Sbjct: 278 GANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPST 337

Query: 166 CFPHPYSHALPSQPSTGGAFALSHQSEDW--YPTLHPAPAGHLPCPPPPPMLPLSLEP 221
                +   +PS P +  A+ L      +  Y      P+G  P  P  P +   L P
Sbjct: 338 V----HQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSG--PSNPMNPTIGNGLSP 389


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 31/178 (17%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RTTF+  QLE+LE AF R  YPDI+ RE LA+   L+EAR+QVWF NRRA+ RKQ 
Sbjct: 219 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 278

Query: 129 -RSLLQPLAHLSPAAF-------------------SSFLPESTACPYSYA---APPPPVT 165
             + L    HL P  F                    + +P++ + P S      P PP T
Sbjct: 279 GANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPST 338

Query: 166 CFPHPYSHALPSQPSTGGAFALSHQSEDW--YPTLHPAPAGHLPCPPPPPMLPLSLEP 221
                +   +PS P +  A+ L      +  Y      P+G  P  P  P +   L P
Sbjct: 339 V----HQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSG--PSNPMNPTIGNGLSP 390


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 31/178 (17%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RTTF+  QLE+LE AF R  YPDI+ RE LA+   L+EAR+QVWF NRRA+ RKQ 
Sbjct: 219 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 278

Query: 129 -RSLLQPLAHLSPAAF-------------------SSFLPESTACPYSYA---APPPPVT 165
             + L    HL P  F                    + +P++ + P S      P PP T
Sbjct: 279 GANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPST 338

Query: 166 CFPHPYSHALPSQPSTGGAFALSHQSEDW--YPTLHPAPAGHLPCPPPPPMLPLSLEP 221
                +   +PS P +  A+ L      +  Y      P+G  P  P  P +   L P
Sbjct: 339 V----HQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSG--PSNPMNPTIGNGLSP 390


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 31/178 (17%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RTTF+  QLE+LE AF R  YPDI+ RE LA+   L+EAR+QVWF NRRA+ RKQ 
Sbjct: 219 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 278

Query: 129 -RSLLQPLAHLSPAAF-------------------SSFLPESTACPYSYA---APPPPVT 165
             + L    HL P  F                    + +P++ + P S      P PP T
Sbjct: 279 GANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPST 338

Query: 166 CFPHPYSHALPSQPSTGGAFALSHQSEDW--YPTLHPAPAGHLPCPPPPPMLPLSLEP 221
                +   +PS P +  A+ L      +  Y      P+G  P  P  P +   L P
Sbjct: 339 V----HQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSG--PSNPMNPTIGNGLSP 390


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 31/178 (17%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RTTF+  QLE+LE AF R  YPDI+ RE LA+   L+EAR+QVWF NRRA+ RKQ 
Sbjct: 219 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 278

Query: 129 -RSLLQPLAHLSPAAF-------------------SSFLPESTACPYSYA---APPPPVT 165
             + L    HL P  F                    + +P++ + P S      P PP T
Sbjct: 279 GANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPST 338

Query: 166 CFPHPYSHALPSQPSTGGAFALSHQSEDW--YPTLHPAPAGHLPCPPPPPMLPLSLEP 221
                +   +PS P +  A+ L      +  Y      P+G  P  P  P +   L P
Sbjct: 339 V----HQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSG--PSNPMNPTIGNGLSP 390


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 31/178 (17%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RTTF+  QLE+LE AF R  YPDI+ RE LA+   L+EAR+QVWF NRRA+ RKQ 
Sbjct: 219 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 278

Query: 129 -RSLLQPLAHLSPAAF-------------------SSFLPESTACPYSYA---APPPPVT 165
             + L    HL P  F                    + +P++ + P S      P PP T
Sbjct: 279 GANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPST 338

Query: 166 CFPHPYSHALPSQPSTGGAFALSHQSEDW--YPTLHPAPAGHLPCPPPPPMLPLSLEP 221
                +   +PS P +  A+ L      +  Y      P+G  P  P  P +   L P
Sbjct: 339 V----HQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSG--PSNPMNPTIGNGLSP 390


>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
          Length = 343

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 40/61 (65%), Positives = 49/61 (80%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR+RTTFS  QLE+LE  F +  YPD++ARE LA  T L+EAR+QVWFQNRRAK RK+E
Sbjct: 153 KRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRE 212

Query: 129 R 129
           R
Sbjct: 213 R 213


>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
          Length = 217

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 65  RPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQ 124
           +   +RR+RTTF+  QL+ LE  F R  YPD + RE LAR   L+EAR+QVWFQNRRAK 
Sbjct: 90  KKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKF 149

Query: 125 RKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPP 163
           R+ ER++   LA+ + +   S+  + TA        P P
Sbjct: 150 RRNERAM---LANKNASLLKSYSGDVTAVEQPIVPRPAP 185


>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
           sapiens]
          Length = 245

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 65  RPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQ 124
           +   +RR+RTTF+  QL+ LE  F R  YPD + RE LAR   L+EAR+QVWFQNRRAK 
Sbjct: 90  KKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKF 149

Query: 125 RKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPP 163
           R+ ER++   LA+ + +   S+  + TA        P P
Sbjct: 150 RRNERAM---LANKNASLLKSYSGDVTAVEQPIVPRPAP 185


>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
          Length = 331

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 61/158 (38%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RT F+  QL +LE  F    YPD + RE L++  GLSEAR+QVWFQNRRAK RKQE
Sbjct: 140 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQE 199

Query: 129 RSLLQPLAHLSPAAFSSFLPESTACPY-SYAAPPPPVT----CFPHPYSHALPSQPSTGG 183
             L + +   + + F +        PY +  A   P      C   P S  + +Q     
Sbjct: 200 NQLHKGVLIGAASQFEA----CRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDS 255

Query: 184 AFALSHQSEDWYPTLHPAPAGHLP---CPPPPPMLPLS 218
           A A +H        LHP  A H P    P PP  LPL+
Sbjct: 256 AVAHAHHH------LHPHLAAHAPYMMFPAPPFGLPLA 287


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 43/76 (56%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RTTF+  QLE+LE AF R  YPDI+ RE LA+ T L+EAR+QVWF NRRA+ RKQ 
Sbjct: 217 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 276

Query: 129 -RSLLQPLAHLSPAAF 143
             + L    HL P  F
Sbjct: 277 GANQLAAFNHLLPGGF 292


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 43/76 (56%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RTTF+  QLE+LE AF R  YPDI+ RE LA+ T L+EAR+QVWF NRRA+ RKQ 
Sbjct: 215 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 274

Query: 129 -RSLLQPLAHLSPAAF 143
             + L    HL P  F
Sbjct: 275 GANQLAAFNHLLPGGF 290


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 43/76 (56%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 69  RRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQE 128
           +RR RTTF+  QLE+LE AF R  YPDI+ RE LA+ T L+EAR+QVWF NRRA+ RKQ 
Sbjct: 217 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 276

Query: 129 -RSLLQPLAHLSPAAF 143
             + L    HL P  F
Sbjct: 277 GANQLAAFNHLLPGGF 292


>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 70/212 (33%), Positives = 95/212 (44%), Gaps = 27/212 (12%)

Query: 15  GRVGS-NLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRGRPHSR---- 69
           G+ GS    P  +P T  P          C++  G G   +  S  G        R    
Sbjct: 151 GQTGSWGTRPGWYPGTSVPGQPTQDG---CQQQEGGGENTNSISSNGEDSDEAQMRLQLK 207

Query: 70  ---RRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRK 126
              +R+RT+F+  Q+E LE  F R  YPD++ARE LA    L EARIQVWF NRRAK R+
Sbjct: 208 RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 267

Query: 127 QERSLLQPLAHLSPAAFSSFLPESTACPYSYAAP-PPPVTCFPHPYSHALPSQPSTGGAF 185
           +E+   Q       +   S +P S++   S   P P P T      S ++  +  T    
Sbjct: 268 EEKLRNQ---RRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDT---- 320

Query: 186 ALSHQSEDWYPTLHPAP----AGHLPCPPPPP 213
           AL++     Y  L P P    A +LP  PP P
Sbjct: 321 ALTNT----YSALPPMPSFTMANNLPMQPPVP 348


>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
          Length = 436

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 70/212 (33%), Positives = 95/212 (44%), Gaps = 27/212 (12%)

Query: 15  GRVGS-NLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRGRPHSR---- 69
           G+ GS    P  +P T  P          C++  G G   +  S  G        R    
Sbjct: 165 GQTGSWGTRPGWYPGTSVPGQPTQDG---CQQQEGGGENTNSISSNGEDSDEAQMRLQLK 221

Query: 70  ---RRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRK 126
              +R+RT+F+  Q+E LE  F R  YPD++ARE LA    L EARIQVWF NRRAK R+
Sbjct: 222 RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 281

Query: 127 QERSLLQPLAHLSPAAFSSFLPESTACPYSYAAP-PPPVTCFPHPYSHALPSQPSTGGAF 185
           +E+   Q       +   S +P S++   S   P P P T      S ++  +  T    
Sbjct: 282 EEKLRNQ---RRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDT---- 334

Query: 186 ALSHQSEDWYPTLHPAP----AGHLPCPPPPP 213
           AL++     Y  L P P    A +LP  PP P
Sbjct: 335 ALTNT----YSALPPMPSFTMANNLPMQPPVP 362


>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 70/212 (33%), Positives = 95/212 (44%), Gaps = 27/212 (12%)

Query: 15  GRVGS-NLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRGRPHSR---- 69
           G+ GS    P  +P T  P          C++  G G   +  S  G        R    
Sbjct: 151 GQTGSWGTRPGWYPGTSVPGQPTQDG---CQQQEGGGENTNSISSNGEDSDEAQMRLQLK 207

Query: 70  ---RRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRK 126
              +R+RT+F+  Q+E LE  F R  YPD++ARE LA    L EARIQVWF NRRAK R+
Sbjct: 208 RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 267

Query: 127 QERSLLQPLAHLSPAAFSSFLPESTACPYSYAAP-PPPVTCFPHPYSHALPSQPSTGGAF 185
           +E+   Q       +   S +P S++   S   P P P T      S ++  +  T    
Sbjct: 268 EEKLRNQ---RRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDT---- 320

Query: 186 ALSHQSEDWYPTLHPAP----AGHLPCPPPPP 213
           AL++     Y  L P P    A +LP  PP P
Sbjct: 321 ALTNT----YSALPPMPSFTMANNLPMQPPVP 348


>gi|4557489 cone-rod homeobox protein [Homo sapiens]
          Length = 299

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 50/112 (44%), Positives = 67/112 (59%), Gaps = 15/112 (13%)

Query: 66  PHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAK-- 123
           P  +RR RTTF+  QLE+LE+ F + QYPD++ARE +A    L E+R+QVWF+NRRAK  
Sbjct: 36  PRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCR 95

Query: 124 -QRKQERSLLQP---LAHLSPA---AFSSFLPESTACP------YSYAAPPP 162
            QR+Q++   QP    A   PA   A +S  P +  CP       SY+ P P
Sbjct: 96  QQRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLP 147


>gi|34365783 visual system homeobox 2 [Homo sapiens]
          Length = 361

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 39/65 (60%), Positives = 47/65 (72%)

Query: 65  RPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQ 124
           +   +RRHRT F+  QLE+LE AF    YPD++ARE LA  T L E RIQVWFQNRRAK 
Sbjct: 144 KKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKW 203

Query: 125 RKQER 129
           RK+E+
Sbjct: 204 RKREK 208


>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
          Length = 302

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 57/137 (41%), Positives = 75/137 (54%), Gaps = 16/137 (11%)

Query: 57  SPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVW 116
           SP+ G   +   +RR RT F+  QL++LE+ F RN+YPD+  RE +A  T L+EAR++VW
Sbjct: 52  SPEDGSLKK--KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVW 109

Query: 117 FQNRRAKQRKQERSLLQPLAHLSPAA-FSSFLP--ESTACPYSYA-------APPPPVTC 166
           F+NRRAK RK+ERS    L   S AA     +P  E     YSY        APP     
Sbjct: 110 FKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKT 169

Query: 167 FPHPYSHA----LPSQP 179
           FP  ++      L SQP
Sbjct: 170 FPFAFNSVNVGPLASQP 186


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,125,112
Number of Sequences: 37866
Number of extensions: 842857
Number of successful extensions: 8821
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 382
Number of HSP's that attempted gapping in prelim test: 6343
Number of HSP's gapped (non-prelim): 2224
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.