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Search of human proteins with 169790969
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169790969 parkin isoform 1 [Homo sapiens]
(465 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169790969 parkin isoform 1 [Homo sapiens] 1003 0.0
gi|169790971 parkin isoform 2 [Homo sapiens] 924 0.0
gi|169790973 parkin isoform 3 [Homo sapiens] 578 e-165
gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding pro... 84 4e-16
gi|5453557 ariadne homolog 2 [Homo sapiens] 77 3e-14
gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens] 77 4e-14
gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens] 77 4e-14
gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens] 77 4e-14
gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens] 77 4e-14
gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens] 77 4e-14
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 67 3e-11
gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo sa... 64 2e-10
gi|35493801 ring finger protein 19 [Homo sapiens] 60 4e-09
gi|35493782 ring finger protein 19 [Homo sapiens] 60 4e-09
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 58 2e-08
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 56 6e-08
gi|38045938 ring finger protein 144 [Homo sapiens] 53 7e-07
gi|22749145 ring finger protein 217 [Homo sapiens] 52 1e-06
gi|67191208 ubiquitin C [Homo sapiens] 51 2e-06
gi|11024714 ubiquitin B precursor [Homo sapiens] 50 3e-06
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 50 3e-06
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 50 3e-06
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 50 3e-06
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 50 3e-06
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 50 4e-06
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 50 4e-06
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 50 4e-06
gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1 is... 48 2e-05
gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1 ... 48 2e-05
gi|46370057 ring finger protein 216 isoform b [Homo sapiens] 44 2e-04
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 1003 bits (2593), Expect = 0.0
Identities = 465/465 (100%), Positives = 465/465 (100%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 61 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA 120
LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
Sbjct: 61 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA 120
Query: 121 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP 180
VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
Sbjct: 121 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP 180
Query: 181 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT 240
SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
Sbjct: 181 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT 240
Query: 241 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE 300
CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
Sbjct: 241 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE 300
Query: 301 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC 360
LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
Sbjct: 301 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC 360
Query: 361 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR 420
GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
Sbjct: 361 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR 420
Query: 421 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV 465
CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
Sbjct: 421 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV 465
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 924 bits (2387), Expect = 0.0
Identities = 437/465 (93%), Positives = 437/465 (93%), Gaps = 28/465 (6%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 61 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA 120
LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
Sbjct: 61 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA 120
Query: 121 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP 180
VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQ
Sbjct: 121 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQ-- 178
Query: 181 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT 240
EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
Sbjct: 179 --------------------------EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT 212
Query: 241 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE 300
CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
Sbjct: 213 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE 272
Query: 301 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC 360
LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
Sbjct: 273 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC 332
Query: 361 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR 420
GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
Sbjct: 333 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR 392
Query: 421 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV 465
CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
Sbjct: 393 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV 437
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 578 bits (1490), Expect = e-165
Identities = 260/262 (99%), Positives = 260/262 (99%)
Query: 204 TSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDC 263
T EFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDC
Sbjct: 55 TVQEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDC 114
Query: 264 FHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEEC 323
FHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEEC
Sbjct: 115 FHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEEC 174
Query: 324 VLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEA 383
VLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEA
Sbjct: 175 VLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEA 234
Query: 384 SGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRL 443
SGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRL
Sbjct: 235 SGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRL 294
Query: 444 EWCWNCGCEWNRVCMGDHWFDV 465
EWCWNCGCEWNRVCMGDHWFDV
Sbjct: 295 EWCWNCGCEWNRVCMGDHWFDV 316
Score = 116 bits (290), Expect = 5e-26
Identities = 57/57 (100%), Positives = 57/57 (100%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ 57
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ 57
>gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding
protein homolog 1 [Homo sapiens]
Length = 557
Score = 83.6 bits (205), Expect = 4e-16
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 30/211 (14%)
Query: 257 HVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQ 316
H C+ C+ Y T++ + +G ++ C A + L+ + R++ + +
Sbjct: 205 HKFCMQCWSEYLTTKIMEEG------MGQTISCPAHGCDILVDDNTVMRLITDSKVKLKY 258
Query: 317 QYGAEECVLQMGGVL--CPRPGCGAGLLPE-PDQRKVTCEGGNGLGCGFAFCRECKEAYH 373
Q+ ++ +L CP P C + + PD + V C+ CG FC C E +H
Sbjct: 259 QHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCK------CGRQFCFNCGENWH 312
Query: 374 EGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMH 433
+ + + D+ + E + W AA+ TK CP+CHV +EK+GGC H
Sbjct: 313 DP-----VKCKWLKKWIKKCDDDS-ETSNWIAAN-------TKECPKCHVTIEKDGGCNH 359
Query: 434 MKCPQPQCRLEWCWNCGCEWNRVCMGDHWFD 464
M C C+ E+CW C W G W++
Sbjct: 360 MVCRNQNCKAEFCWVCLGPWEP--HGSAWYN 388
>gi|5453557 ariadne homolog 2 [Homo sapiens]
Length = 493
Score = 77.4 bits (189), Expect = 3e-14
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 32/220 (14%)
Query: 238 CITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVA-GCPNS 296
C C + +H C C+ +C + D +G + C+A CP
Sbjct: 139 CAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDG-------VGVGVSCMAQDCPLR 191
Query: 297 LIKELHHFRILGEEQYNRYQQYGAEECVLQMGGV-LCPRPGCGAGL-LPEPDQRKVTCEG 354
++ + EE +Y++Y + V + LCP C + + EP R+V C
Sbjct: 192 TPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQEPRARRVQCNR 251
Query: 355 GNGLGCGFAFCRECKEAYHEG-ECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKK 413
C FC +C++ YH +C+ + + + ++ + I
Sbjct: 252 -----CNEVFCFKCRQMYHAPTDCATI--------------RKWLTKCADDSETANYISA 292
Query: 414 TTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 453
TK CP+C++ +EKNGGC HM+C +C+ ++CW C +W
Sbjct: 293 HTKDCPKCNICIEKNGGCNHMQC--SKCKHDFCWMCLGDW 330
>gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.6 bits (187), Expect = 4e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 232 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 288
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 214 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 269
Query: 289 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 347
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 270 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 323
Query: 348 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 393
C G C FAFC C+ YH C E Y R
Sbjct: 324 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 379
Query: 394 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 453
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 380 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 437
Query: 454 NRVCMGDHWFD 464
+R H+ D
Sbjct: 438 SRANPYKHFND 448
>gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.6 bits (187), Expect = 4e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 232 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 288
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 214 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 269
Query: 289 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 347
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 270 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 323
Query: 348 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 393
C G C FAFC C+ YH C E Y R
Sbjct: 324 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 379
Query: 394 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 453
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 380 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 437
Query: 454 NRVCMGDHWFD 464
+R H+ D
Sbjct: 438 SRANPYKHFND 448
>gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.6 bits (187), Expect = 4e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 232 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 288
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 214 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 269
Query: 289 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 347
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 270 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 323
Query: 348 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 393
C G C FAFC C+ YH C E Y R
Sbjct: 324 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 379
Query: 394 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 453
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 380 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 437
Query: 454 NRVCMGDHWFD 464
+R H+ D
Sbjct: 438 SRANPYKHFND 448
>gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens]
Length = 348
Score = 76.6 bits (187), Expect = 4e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 232 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 288
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 88 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 143
Query: 289 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 347
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 144 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 197
Query: 348 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 393
C G C FAFC C+ YH C E Y R
Sbjct: 198 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 253
Query: 394 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 453
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 254 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 311
Query: 454 NRVCMGDHWFD 464
+R H+ D
Sbjct: 312 SRANPYKHFND 322
>gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.6 bits (187), Expect = 4e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 232 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 288
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 214 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 269
Query: 289 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 347
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 270 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 323
Query: 348 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 393
C G C FAFC C+ YH C E Y R
Sbjct: 324 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 379
Query: 394 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 453
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 380 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 437
Query: 454 NRVCMGDHWFD 464
+R H+ D
Sbjct: 438 SRANPYKHFND 448
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 67.0 bits (162), Expect = 3e-11
Identities = 54/207 (26%), Positives = 80/207 (38%), Gaps = 37/207 (17%)
Query: 257 HVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPC-VAGCPNSLIKELHHFRILGEEQYNRY 315
H C C++ Y TR+ + L + C +A CP + E ++Y
Sbjct: 2090 HYCCKSCWNEYLTTRI-------EQNLVLNCTCPIADCPAQPTGAFIRAIVSSPEVISKY 2142
Query: 316 QQYGAEECVLQMGGVL-CPRP-GCGAGLLPEPDQRKVTCEGGNGLG-----CGFAFCREC 368
++ V + C P GC ++ C G G G CG+A C C
Sbjct: 2143 EKALLRGYVESCSNLTWCTNPQGCD----------RILCRQGLGCGTTCSKCGWASCFNC 2192
Query: 369 K--EAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVE 426
EA++ C + + + D + EA SK K +K CP C P+E
Sbjct: 2193 SFPEAHYPASCGHMSQ--------WVDDGGYYDGMSVEAQSKHLAKLISKRCPSCQAPIE 2244
Query: 427 KNGGCMHMKCPQPQCRLEWCWNCGCEW 453
KN GC+HM C +C +CW C W
Sbjct: 2245 KNEGCLHMTC--AKCNHGFCWRCLKSW 2269
>gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo
sapiens]
Length = 1089
Score = 64.3 bits (155), Expect = 2e-10
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 306 ILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQRKVTCEGGNGLGC---- 360
++ +E RY Q+ + V + CP PGC + ++T +G N G
Sbjct: 395 VVSKEMDKRYLQFDIKAFVENNPAIKWCPTPGCDRAV-------RLTKQGSNTSGSDTLS 447
Query: 361 -------------GFAFCRECK-EAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAA 406
G FC EC EA+ +C T+ + +A +AA
Sbjct: 448 FPLLRAPAVDCGKGHLFCWECLGEAHEPCDCQTWKNWLQKITEMKPEELVGVSEAYEDAA 507
Query: 407 SKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNR 455
+ + +KPC C P++KN GC HM+C +C+ ++CW C EW +
Sbjct: 508 NCLWLLTNSKPCANCKSPIQKNEGCNHMQC--AKCKYDFCWICLEEWKK 554
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 60.1 bits (144), Expect = 4e-09
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 332 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASGTTT 388
CP P CG ++ K+TC GCG FC CK+ +H + C A + +
Sbjct: 219 CPAPDCGYAVIAFGCASCPKLTC---GREGCGTEFCYHCKQIWHPNQTCDAARQERAQSL 275
Query: 389 QAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWC 446
+ + + ++ A+ + I KPCPRC + K +G C HM C C E+C
Sbjct: 276 RLRTIRSSSISYSQESGAAADDI----KPCPRCAAYIIKMNDGSCNHMTC--AVCGCEFC 329
Query: 447 WNC 449
W C
Sbjct: 330 WLC 332
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 60.1 bits (144), Expect = 4e-09
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 332 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASGTTT 388
CP P CG ++ K+TC GCG FC CK+ +H + C A + +
Sbjct: 219 CPAPDCGYAVIAFGCASCPKLTC---GREGCGTEFCYHCKQIWHPNQTCDAARQERAQSL 275
Query: 389 QAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWC 446
+ + + ++ A+ + I KPCPRC + K +G C HM C C E+C
Sbjct: 276 RLRTIRSSSISYSQESGAAADDI----KPCPRCAAYIIKMNDGSCNHMTC--AVCGCEFC 329
Query: 447 WNC 449
W C
Sbjct: 330 WLC 332
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 58.2 bits (139), Expect = 2e-08
Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 332 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ 389
CP P CG ++ K+TCE GC FC CK+ +H + + T
Sbjct: 206 CPAPDCGYAVIAYGCASCPKLTCERE---GCQTEFCYHCKQIWHPNQTCDMARQQRAQTL 262
Query: 390 AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWCW 447
R + E+ + I KPCPRC + K +G C HM C C E+CW
Sbjct: 263 RVRTKHTSGLSYGQESGPADDI----KPCPRCSAYIIKMNDGSCNHMTC--AVCGCEFCW 316
Query: 448 NC 449
C
Sbjct: 317 LC 318
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 56.2 bits (134), Expect = 6e-08
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 332 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ 389
CP P CG ++ K+TCE GC FC CK+ +H + + A Q
Sbjct: 206 CPAPDCGYAVIAYGCASCPKLTCERE---GCQTEFCYHCKQIWHPNQTCDM--ARQQRAQ 260
Query: 390 AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWCW 447
RV + + +E+ KPCPRC + K +G C HM C C E+CW
Sbjct: 261 TLRVRTKHTSGLSY---GQESGPDDIKPCPRCSAYIIKMNDGSCNHMTC--AVCGCEFCW 315
Query: 448 NC 449
C
Sbjct: 316 LC 317
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 52.8 bits (125), Expect = 7e-07
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 48/206 (23%)
Query: 263 CFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFR------ILGEEQYNRYQ 316
C ++C L +Q+V + + L CP++ + H + ++ E RY+
Sbjct: 38 CQCIFCTLCL--KQYV-ELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 94
Query: 317 QYGAE-ECVLQMGGVLCPRPGCGA-------GL-LPEPDQRKVTCEGGNGLGCGFAFCRE 367
+ E E + CP C A GL P+P Q K C FC
Sbjct: 95 KLQFEREVLFDPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKA---------CRMEFCST 145
Query: 368 CKEAYHEG----ECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHV 423
CK ++H G E + G T+ A++++E A K CP+C V
Sbjct: 146 CKASWHPGQGCPETMPITFLPGETSAAFKMEEDDAP---------------IKRCPKCKV 190
Query: 424 PVEKNGGCMHMKCPQPQCRLEWCWNC 449
+E++ GC M C C+ +CW C
Sbjct: 191 YIERDEGCAQMMC--KNCKHAFCWYC 214
>gi|22749145 ring finger protein 217 [Homo sapiens]
Length = 275
Score = 51.6 bits (122), Expect = 1e-06
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 360 CGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCP 419
C F +C +C +HEG + Y+ ++ W A+ E ++ + CP
Sbjct: 86 CQFVWCFKCHSPWHEG----------VNCKEYKKGDKLLRH--W-ASEIEHGQRNAQKCP 132
Query: 420 RCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRV-CMGDH 461
+C + +++ GC HM C QC +C+ CG + ++ GDH
Sbjct: 133 KCKIHIQRTEGCDHMTC--SQCNTNFCYRCGERYRQLRFFGDH 173
Score = 35.8 bits (81), Expect = 0.085
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 411 IKKTTKPCPRC----------HVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWN 454
I +TKPCP+C H+P + K P C+ WC+ C W+
Sbjct: 47 IDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKY-KIQCPTCQFVWCFKCHSPWH 99
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 51.2 bits (121), Expect = 2e-06
Identities = 23/72 (31%), Positives = 46/72 (63%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P+DQ R+IFAGK+L + T+ + +
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 213 IQKESTLHLVLR 224
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 61 IQKESTLHLVLR 72
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 137 IQKESTLHLVLR 148
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 289 IQKESTLHLVLR 300
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 365 IQKESTLHLVLR 376
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 441 IQKESTLHLVLR 452
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 517 IQKESTLHLVLR 528
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 593 IQKESTLHLVLR 604
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 669 IQKESTLHLVLR 680
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 61 IQKESTLHLVLR 72
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 137 IQKESTLHLVLR 148
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 213 IQKESTLHLVLR 224
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 61 IQKESTLHLVLR 72
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 61 IQKESTLHLVLR 72
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 61 IQKESTLHLVLR 72
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 LDQQSIVHIVQR 72
+ ++S +H+V R
Sbjct: 61 IQKESTLHLVLR 72
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 50.1 bits (118), Expect = 4e-06
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 3 VFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLD 62
+FV+ +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ +C++
Sbjct: 71 IFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQ 130
Query: 63 QQSIVHIVQR 72
++ +H++ R
Sbjct: 131 KEPTLHLLLR 140
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 50.1 bits (118), Expect = 4e-06
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 3 VFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLD 62
+FV+ +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ +C++
Sbjct: 71 IFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQ 130
Query: 63 QQSIVHIVQR 72
++ +H++ R
Sbjct: 131 KEPTLHLLLR 140
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 50.1 bits (118), Expect = 4e-06
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 3 VFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLD 62
+FV+ +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ +C++
Sbjct: 71 IFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQ 130
Query: 63 QQSIVHIVQR 72
++ +H++ R
Sbjct: 131 KEPTLHLLLR 140
>gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1
isoform 1 [Homo sapiens]
Length = 468
Score = 48.1 bits (113), Expect = 2e-05
Identities = 55/237 (23%), Positives = 79/237 (33%), Gaps = 26/237 (10%)
Query: 229 IATNSRNITCITCTDVRSP---VLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGY 285
+ N+ C C V +P V++ +C H C +C L R + V P +
Sbjct: 231 LVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCREC--LQGTIRNSQEAEVSCPFIDN 286
Query: 286 SLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPE 344
+ C IK L L E Y R+ G + C P C E
Sbjct: 287 TYSCSGKLLEREIKAL-----LTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFE 341
Query: 345 PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWE 404
D + TC C C CK + + C E Q + E +
Sbjct: 342 DDVNEFTCPV-----CFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM 396
Query: 405 AASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCW-NCGCEWNRVCMGD 460
E ++ CP+C + V+K GC ++C C E CW G W GD
Sbjct: 397 LQQGEAMR-----CPQCQIVVQKKDGCDWIRC--TVCHTEICWVTKGPRWGPGGPGD 446
>gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1
isoform 2 [Homo sapiens]
Length = 510
Score = 48.1 bits (113), Expect = 2e-05
Identities = 55/237 (23%), Positives = 79/237 (33%), Gaps = 26/237 (10%)
Query: 229 IATNSRNITCITCTDVRSP---VLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGY 285
+ N+ C C V +P V++ +C H C +C L R + V P +
Sbjct: 273 LVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCREC--LQGTIRNSQEAEVSCPFIDN 328
Query: 286 SLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPE 344
+ C IK L L E Y R+ G + C P C E
Sbjct: 329 TYSCSGKLLEREIKAL-----LTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFE 383
Query: 345 PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWE 404
D + TC C C CK + + C E Q + E +
Sbjct: 384 DDVNEFTCPV-----CFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM 438
Query: 405 AASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCW-NCGCEWNRVCMGD 460
E ++ CP+C + V+K GC ++C C E CW G W GD
Sbjct: 439 LQQGEAMR-----CPQCQIVVQKKDGCDWIRC--TVCHTEICWVTKGPRWGPGGPGD 488
>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
Length = 866
Score = 44.3 bits (103), Expect = 2e-04
Identities = 31/110 (28%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 364 FCRECKEAYH---------------EGECSAVFEASGTT-----TQAYRVDERAAEQARW 403
FC+EC Y EG C+ F S T Y+ ER AE+
Sbjct: 536 FCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVA 595
Query: 404 EAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 453
A + E ++ CP C P + CP P CR E C C W
Sbjct: 596 AAYADELVR-----CPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLW 640
Score = 42.4 bits (98), Expect = 0.001
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 23/198 (11%)
Query: 252 QCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQ 311
QC H+ C +C Y + + + S C P S ++++ IL
Sbjct: 529 QCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGS--CTCSFPTSELEKVLPQTIL---- 582
Query: 312 YNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 371
Y Y++ EE L P C L + D ++ +C + C CR+C+
Sbjct: 583 YKYYERKAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPH---CRKETCRKCQGL 639
Query: 372 YHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGC 431
+ E +G T + + E+ + R K T + K C +C + K+ GC
Sbjct: 640 WKEH--------NGLTCE--ELAEKDDIKYRTSIEEKMTAARIRK-CHKCGTGLIKSEGC 688
Query: 432 MHMKCPQPQCRLEWCWNC 449
M C +C + C+ C
Sbjct: 689 NRMSC---RCGAQMCYLC 703
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,494,343
Number of Sequences: 37866
Number of extensions: 1112580
Number of successful extensions: 3179
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3046
Number of HSP's gapped (non-prelim): 121
length of query: 465
length of database: 18,247,518
effective HSP length: 106
effective length of query: 359
effective length of database: 14,233,722
effective search space: 5109906198
effective search space used: 5109906198
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.