Search of human proteins with 169790837

Search of human proteins with 169790837

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169790837 runt-related transcription factor 1 isoform AML1a
[Homo sapiens]
         (250 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169790837 runt-related transcription factor 1 isoform AML1a [...   508   e-144
gi|49574546 runt-related transcription factor 1 isoform AML1b [H...   488   e-138
gi|19923198 runt-related transcription factor 1 isoform AML1c [H...   479   e-135
gi|4757918 runt-related transcription factor 3 isoform 2 [Homo s...   334   5e-92
gi|66934969 runt-related transcription factor 2 isoform c [Homo ...   332   2e-91
gi|72534652 runt-related transcription factor 3 isoform 1 [Homo ...   324   4e-89
gi|226442791 runt-related transcription factor 2 isoform b [Homo...   322   2e-88
gi|226442783 runt-related transcription factor 2 isoform a [Homo...   322   2e-88
gi|171184451 centrosome-associated protein 350 [Homo sapiens]          33   0.30 
gi|169183885 PREDICTED: similar to microtubule-associated protei...    32   0.52 
gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo sap...    32   0.52 
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora...    31   0.89 
gi|4506597 ribosomal protein L12 [Homo sapiens]                        31   1.2  
gi|60097902 filaggrin [Homo sapiens]                                   30   1.5  
gi|21536423 amphiphysin isoform 2 [Homo sapiens]                       30   1.5  
gi|4502081 amphiphysin isoform 1 [Homo sapiens]                        30   1.5  
gi|187830909 tumor protein p53 isoform f [Homo sapiens]                30   2.0  
gi|187830901 tumor protein p53 isoform e [Homo sapiens]                30   2.0  
gi|187830894 tumor protein p53 isoform d [Homo sapiens]                30   2.0  
gi|187830855 tumor protein p53 isoform b [Homo sapiens]                30   2.0  
gi|187830823 tumor protein p53 isoform c [Homo sapiens]                30   2.0  
gi|187830777 tumor protein p53 isoform a [Homo sapiens]                30   2.0  
gi|120407068 tumor protein p53 isoform a [Homo sapiens]                30   2.0  
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho...    29   4.4  
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         29   4.4  
gi|31542650 MANSC domain containing 1 [Homo sapiens]                   28   5.8  
gi|116292168 KRAB A domain containing 1 [Homo sapiens]                 28   5.8  
gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartat...    28   7.5  
gi|239743654 PREDICTED: similar to block of proliferation 1 [Hom...    28   7.5  
gi|7657039 tumor necrosis factor receptor superfamily, member 21...    28   7.5  

>gi|169790837 runt-related transcription factor 1 isoform AML1a
           [Homo sapiens]
          Length = 250

 Score =  508 bits (1308), Expect = e-144
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG 60
           MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG
Sbjct: 1   MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG 60

Query: 61  ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 120
           ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA
Sbjct: 61  ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 120

Query: 121 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR 180
           TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR
Sbjct: 121 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR 180

Query: 181 QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM 240
           QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM
Sbjct: 181 QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM 240

Query: 241 QEEDTAPWRC 250
           QEEDTAPWRC
Sbjct: 241 QEEDTAPWRC 250


>gi|49574546 runt-related transcription factor 1 isoform AML1b [Homo
           sapiens]
          Length = 453

 Score =  488 bits (1257), Expect = e-138
 Identities = 243/252 (96%), Positives = 246/252 (97%), Gaps = 4/252 (1%)

Query: 1   MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG 60
           MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG
Sbjct: 1   MRIPVDASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPG 60

Query: 61  ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 120
           ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA
Sbjct: 61  ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 120

Query: 121 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR 180
           TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR
Sbjct: 121 TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHR 180

Query: 181 QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM 240
           QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM
Sbjct: 181 QKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQM 240

Query: 241 QE----EDTAPW 248
           Q+    + + PW
Sbjct: 241 QDTRQIQPSPPW 252


>gi|19923198 runt-related transcription factor 1 isoform AML1c [Homo
           sapiens]
          Length = 480

 Score =  479 bits (1232), Expect = e-135
 Identities = 238/247 (96%), Positives = 241/247 (97%), Gaps = 4/247 (1%)

Query: 6   DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 65
           DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT
Sbjct: 33  DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 92

Query: 66  DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 125
           DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK
Sbjct: 93  DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 152

Query: 126 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 185
           NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD
Sbjct: 153 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 212

Query: 186 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQE--- 242
           QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQ+   
Sbjct: 213 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ 272

Query: 243 -EDTAPW 248
            + + PW
Sbjct: 273 IQPSPPW 279


>gi|4757918 runt-related transcription factor 3 isoform 2 [Homo
           sapiens]
          Length = 415

 Score =  334 bits (856), Expect = 5e-92
 Identities = 176/245 (71%), Positives = 196/245 (80%), Gaps = 15/245 (6%)

Query: 1   MRIPVDASTSRRFTPPSTAL----SPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLA 56
           MRIPVD STSRRFTPPS A       GKM E     +  A     G+ R   RSMV+VLA
Sbjct: 1   MRIPVDPSTSRRFTPPSPAFPCGGGGGKMGENSGALSAQAAVGPGGRARPEVRSMVDVLA 60

Query: 57  DHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAE 116
           DH GELVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALGDVPDGT+VTVMAGNDENYSAE
Sbjct: 61  DHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAE 120

Query: 117 LRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREP 176
           LRNA+A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNP QVATYHRAIK+TVDGPREP
Sbjct: 121 LRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREP 180

Query: 177 RRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQP 236
           RRHRQKL+DQTKP    F +R  +LE+LR   MRV+P     TP+PR SL+ ++ F+ QP
Sbjct: 181 RRHRQKLEDQTKP----FPDRFGDLERLR---MRVTP----STPSPRGSLSTTSHFSSQP 229

Query: 237 QSQMQ 241
           Q+ +Q
Sbjct: 230 QTPIQ 234


>gi|66934969 runt-related transcription factor 2 isoform c [Homo
           sapiens]
          Length = 507

 Score =  332 bits (850), Expect = 2e-91
 Identities = 182/290 (62%), Positives = 209/290 (72%), Gaps = 49/290 (16%)

Query: 1   MRIPVDASTSRRFTPPSTALSPGKMSEALPL----------------------------- 31
           MRIPVD STSRRF+PPS++L PGKMS+  P+                             
Sbjct: 1   MRIPVDPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAA 60

Query: 32  ------GAPDAGAALAGKLRS--GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNK 83
                  A  A AA   +LR    +R+MVE++ADHP ELVRTDSPNFLCSVLP+HWRCNK
Sbjct: 61  AAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNK 120

Query: 84  TLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRG 143
           TLP+AFKVVALG+VPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRG
Sbjct: 121 TLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRG 180

Query: 144 KSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQ 203
           KSFTLTITVFTNPPQVATYHRAIK+TVDGPREPRRHRQKLDD +KP    FS+RLS+L +
Sbjct: 181 KSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDD-SKPS--LFSDRLSDLGR 237

Query: 204 LRRTAMRVSPHHPAPTPNPRASLNHS-TAFNPQPQSQM----QEEDTAPW 248
           +   +MRV      P  NPR SLN + + FNPQ QSQ+    Q + + PW
Sbjct: 238 IPHPSMRVG----VPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPW 283


>gi|72534652 runt-related transcription factor 3 isoform 1 [Homo
           sapiens]
          Length = 429

 Score =  324 bits (831), Expect = 4e-89
 Identities = 171/240 (71%), Positives = 191/240 (79%), Gaps = 15/240 (6%)

Query: 6   DASTSRRFTPPSTAL----SPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGE 61
           D STSRRFTPPS A       GKM E     +  A     G+ R   RSMV+VLADH GE
Sbjct: 20  DPSTSRRFTPPSPAFPCGGGGGKMGENSGALSAQAAVGPGGRARPEVRSMVDVLADHAGE 79

Query: 62  LVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNAT 121
           LVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALGDVPDGT+VTVMAGNDENYSAELRNA+
Sbjct: 80  LVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNAS 139

Query: 122 AAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQ 181
           A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNP QVATYHRAIK+TVDGPREPRRHRQ
Sbjct: 140 AVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREPRRHRQ 199

Query: 182 KLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQ 241
           KL+DQTKP    F +R  +LE+LR   MRV+P     TP+PR SL+ ++ F+ QPQ+ +Q
Sbjct: 200 KLEDQTKP----FPDRFGDLERLR---MRVTP----STPSPRGSLSTTSHFSSQPQTPIQ 248


>gi|226442791 runt-related transcription factor 2 isoform b [Homo
           sapiens]
          Length = 499

 Score =  322 bits (825), Expect = 2e-88
 Identities = 177/285 (62%), Positives = 204/285 (71%), Gaps = 49/285 (17%)

Query: 6   DASTSRRFTPPSTALSPGKMSEALPL---------------------------------- 31
           D STSRRF+PPS++L PGKMS+  P+                                  
Sbjct: 20  DPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAA 79

Query: 32  -GAPDAGAALAGKLRS--GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIA 88
             A  A AA   +LR    +R+MVE++ADHP ELVRTDSPNFLCSVLP+HWRCNKTLP+A
Sbjct: 80  AAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVA 139

Query: 89  FKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTL 148
           FKVVALG+VPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRGKSFTL
Sbjct: 140 FKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTL 199

Query: 149 TITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTA 208
           TITVFTNPPQVATYHRAIK+TVDGPREPRRHRQKLDD +KP    FS+RLS+L ++   +
Sbjct: 200 TITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDD-SKPS--LFSDRLSDLGRIPHPS 256

Query: 209 MRVSPHHPAPTPNPRASLNHS-TAFNPQPQSQM----QEEDTAPW 248
           MRV      P  NPR SLN + + FNPQ QSQ+    Q + + PW
Sbjct: 257 MRVG----VPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPW 297


>gi|226442783 runt-related transcription factor 2 isoform a [Homo
           sapiens]
          Length = 521

 Score =  322 bits (825), Expect = 2e-88
 Identities = 177/285 (62%), Positives = 204/285 (71%), Gaps = 49/285 (17%)

Query: 6   DASTSRRFTPPSTALSPGKMSEALPL---------------------------------- 31
           D STSRRF+PPS++L PGKMS+  P+                                  
Sbjct: 20  DPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAA 79

Query: 32  -GAPDAGAALAGKLRS--GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIA 88
             A  A AA   +LR    +R+MVE++ADHP ELVRTDSPNFLCSVLP+HWRCNKTLP+A
Sbjct: 80  AAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVA 139

Query: 89  FKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTL 148
           FKVVALG+VPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRGKSFTL
Sbjct: 140 FKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTL 199

Query: 149 TITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTA 208
           TITVFTNPPQVATYHRAIK+TVDGPREPRRHRQKLDD +KP    FS+RLS+L ++   +
Sbjct: 200 TITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDD-SKPS--LFSDRLSDLGRIPHPS 256

Query: 209 MRVSPHHPAPTPNPRASLNHS-TAFNPQPQSQM----QEEDTAPW 248
           MRV      P  NPR SLN + + FNPQ QSQ+    Q + + PW
Sbjct: 257 MRVG----VPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPW 297


>gi|171184451 centrosome-associated protein 350 [Homo sapiens]
          Length = 3117

 Score = 32.7 bits (73), Expect = 0.30
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 184 DDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPN-PRASLNHSTAFNPQPQSQMQE 242
           D   KP +  +  +L  +E L+ TA  +S    +       AS+N+ +A+N +   Q   
Sbjct: 808 DALLKPSASQYKSKLDRIEALKATAASLSSRIESEAKKLAGASINYGSAWNTEYDVQQAP 867

Query: 243 EDTAPW 248
           ++  PW
Sbjct: 868 QEDGPW 873


>gi|169183885 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 157

 Score = 32.0 bits (71), Expect = 0.52
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 173 PREP-RRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTP 220
           PR P RR R++LD +T+P   +F +R     Q R     +   HPA +P
Sbjct: 16  PRGPSRRRRRRLDPRTRPAEKTFKQR--RTFQQRVDVRLIQEQHPAKSP 62


>gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo
           sapiens]
          Length = 592

 Score = 32.0 bits (71), Expect = 0.52
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 212 SPHHPAPTPNPRASLNHSTAFNPQPQSQMQEEDTAPW 248
           SP  PAP   P+   + +T  +PQP S  +E  T+PW
Sbjct: 511 SPWAPAPADGPQPPKDSATPLSPQPPS--EEPATSPW 545


>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 1 [Homo sapiens]
          Length = 559

 Score = 31.2 bits (69), Expect = 0.89
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 167 KITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQ--LRRTAMRVSPHHPAPTPNPRA 224
           K + D  R+    R   +++  P   +F E    L++  L  T+ +  P  P P P   +
Sbjct: 224 KSSKDTSRKLGEGRLPKEEKAPPPKAAFKEPKMALKETKLESTSPKGGPPPPPPPPPRAS 283

Query: 225 SLNHSTAFNPQPQSQMQEEDTA 246
           S   +TA +P+P ++ Q++ ++
Sbjct: 284 SKRPATADSPKPSAKKQKKSSS 305


>gi|4506597 ribosomal protein L12 [Homo sapiens]
          Length = 165

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 15/68 (22%), Positives = 33/68 (48%)

Query: 142 RGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSEL 201
           +G   T+ +T+     Q+     A  + +   +EP R R+K  +    G+++F E ++  
Sbjct: 54  KGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIA 113

Query: 202 EQLRRTAM 209
            Q+R  ++
Sbjct: 114 RQMRHRSL 121


>gi|60097902 filaggrin [Homo sapiens]
          Length = 4061

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 135  RFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTK------ 188
            R  GRSGR  SF   ++  T+    + + R    T  G R+   H+Q  D          
Sbjct: 2403 RSAGRSGRSGSFLYQVS--THEQSESAHGRTGTST--GGRQGSHHKQARDSSRHSTSQEG 2458

Query: 189  -------PGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQ 241
                   PGS S   + S  EQL   +     HH   T   R+  +H  + +     Q +
Sbjct: 2459 QDTIHGHPGSSSGGRQGSHYEQLVDRSGHSGSHHSHTTSQGRSDASHGHSGSRSASRQTR 2518

Query: 242  EED 244
             ++
Sbjct: 2519 NDE 2521


>gi|21536423 amphiphysin isoform 2 [Homo sapiens]
          Length = 653

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 182 KLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTA 231
           KL DQ    + +     S+   LR       P  P+P P+P AS NH+ A
Sbjct: 233 KLGDQHADKAFTIQGAPSDSGPLRIAKTPSPPEEPSPLPSPTASPNHTLA 282


>gi|4502081 amphiphysin isoform 1 [Homo sapiens]
          Length = 695

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 182 KLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTA 231
           KL DQ    + +     S+   LR       P  P+P P+P AS NH+ A
Sbjct: 233 KLGDQHADKAFTIQGAPSDSGPLRIAKTPSPPEEPSPLPSPTASPNHTLA 282


>gi|187830909 tumor protein p53 isoform f [Homo sapiens]
          Length = 214

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 196 ERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQ 239
           +R +E E LR+      PHH  P  + + +L ++T+ +PQP+ +
Sbjct: 149 DRRTEEENLRKKG---EPHHELPPGSTKRALPNNTSSSPQPKKK 189


>gi|187830901 tumor protein p53 isoform e [Homo sapiens]
          Length = 209

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 196 ERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQ 239
           +R +E E LR+      PHH  P  + + +L ++T+ +PQP+ +
Sbjct: 149 DRRTEEENLRKKG---EPHHELPPGSTKRALPNNTSSSPQPKKK 189


>gi|187830894 tumor protein p53 isoform d [Homo sapiens]
          Length = 261

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 196 ERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQ 239
           +R +E E LR+      PHH  P  + + +L ++T+ +PQP+ +
Sbjct: 149 DRRTEEENLRKKG---EPHHELPPGSTKRALPNNTSSSPQPKKK 189


>gi|187830855 tumor protein p53 isoform b [Homo sapiens]
          Length = 341

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 196 ERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQ 239
           +R +E E LR+      PHH  P  + + +L ++T+ +PQP+ +
Sbjct: 281 DRRTEEENLRKKG---EPHHELPPGSTKRALPNNTSSSPQPKKK 321


>gi|187830823 tumor protein p53 isoform c [Homo sapiens]
          Length = 346

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 196 ERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQ 239
           +R +E E LR+      PHH  P  + + +L ++T+ +PQP+ +
Sbjct: 281 DRRTEEENLRKKG---EPHHELPPGSTKRALPNNTSSSPQPKKK 321


>gi|187830777 tumor protein p53 isoform a [Homo sapiens]
          Length = 393

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 196 ERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQ 239
           +R +E E LR+      PHH  P  + + +L ++T+ +PQP+ +
Sbjct: 281 DRRTEEENLRKKG---EPHHELPPGSTKRALPNNTSSSPQPKKK 321


>gi|120407068 tumor protein p53 isoform a [Homo sapiens]
          Length = 393

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 196 ERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQ 239
           +R +E E LR+      PHH  P  + + +L ++T+ +PQP+ +
Sbjct: 281 DRRTEEENLRKKG---EPHHELPPGSTKRALPNNTSSSPQPKKK 321


>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
           sapiens]
          Length = 248

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 166 IKITVDGPREPR--RHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHH 215
           I++ VDGPR P   R R +   +++  S S S   S   +  R + R SP H
Sbjct: 190 IRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRH 241


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 3   IPVDASTSRRFTPPSTALSPG-KMSEALPLGAP--DAGAALAGKLRSGDRSMVEVLADHP 59
           +P   S+S RF P   A SP      A+ L AP  + GAAL   L   D  +    A H 
Sbjct: 193 VPSGGSSSPRFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPSD--LGSPPAPHA 250

Query: 60  GELVRTDSPNFLCS 73
                +D P F CS
Sbjct: 251 SSSPPSDPPLFHCS 264


>gi|31542650 MANSC domain containing 1 [Homo sapiens]
          Length = 431

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 16/44 (36%), Positives = 19/44 (43%)

Query: 204 LRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQEEDTAP 247
           L  T    SPH  + TP P   L  + +  P   SQ Q   TAP
Sbjct: 226 LPATVAVASPHTTSATPKPATLLPTNASVTPSGTSQPQLATTAP 269


>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
          Length = 1030

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 16/146 (10%)

Query: 115 AELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPR 174
           AE RN TA  +   A   +   +G+ GRG++ T ++ + +  PQV T          G +
Sbjct: 532 AEPRNWTADKEGLRAEACESARLGQ-GRGEAPTRSLHLVS--PQVFTSSCVPACHQRGFK 588

Query: 175 EPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHH--------PAPTPNPRASL 226
           +P   R  +      GS      L  LE   R  + V P          P+P+P   +S 
Sbjct: 589 DPGATRPGVWRWLPEGSAPKPSPLHCLESALRGILPVRPLRFACVGGPSPSPSPGSSSSF 648

Query: 227 NHSTAFNPQPQSQM-----QEEDTAP 247
           + S   +P+P+  +     QE D  P
Sbjct: 649 SGSEGEDPRPEPDLWKPLPQERDRLP 674


>gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartate
           3A [Homo sapiens]
          Length = 1115

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 2   RIPVD--ASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHP 59
           R P D  A   R    P T  SP     A  LG+   G    G  + G+ +  E L    
Sbjct: 67  RAPDDSRAGAQRDEPEPGTRRSPAPSPGARWLGSTLHGRGPPGSRKPGEGARAEALWPRD 126

Query: 60  GELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA-LGDVP 98
             L   D+ N +  +LP     N +L +   + A LGD+P
Sbjct: 127 ALLFAVDNLNRVEGLLP----YNLSLEVVMAIEAGLGDLP 162


>gi|239743654 PREDICTED: similar to block of proliferation 1 [Homo
           sapiens]
          Length = 668

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 215 HPAPTPNPRASL-NHSTAFNPQPQSQMQEEDTAPW 248
           H    P P+ +L  H+ ++NP P+  + EE+   W
Sbjct: 218 HKMHVPAPKLALPGHAESYNPPPEYLLSEEERLAW 252


>gi|7657039 tumor necrosis factor receptor superfamily, member 21
           precursor [Homo sapiens]
          Length = 655

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 209 MRVSPHHPAPTPNPRASLNHSTAFNPQPQSQ 239
           M  SP  P+P P+P A L +S     +P  Q
Sbjct: 513 MSPSPLSPSPIPSPNAKLENSALLTVEPSPQ 543


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,720,321
Number of Sequences: 37866
Number of extensions: 509428
Number of successful extensions: 2308
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2262
Number of HSP's gapped (non-prelim): 64
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.