Guide to the Human Genome
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Name: RPL12 Sequence: fasta or formatted (165aa) NCBI GI: 4506597
Description:

ribosomal protein L12

Referenced in:

Ribosomes
Small RNAs in RNA Processing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         14           1
 C cysteine            1.8          3           1
 D aspartate           6.1         10           2
 E glutamate           4.8          8           1
 F phenylalanine       1.2          2           1
 G glycine             8.5         14           2
 H histidine           2.4          4           1
 I isoleucine         10.3         17           2
 K lysine              9.1         15           2
 L leucine             6.7         11           1
 M methionine          1.2          2           1
 N asparagine          4.2          7           1
 P proline             6.7         11           2
 Q glutamine           3.6          6           1
 R arginine            6.1         10           1
 S serine              6.1         10           1
 T threonine           4.8          8           1
 V valine              6.7         11           2
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein L12 
MRPL11                0.023   mitochondrial ribosomal protein L11 isoform c 
MRPL11                0.023   mitochondrial ribosomal protein L11 isoform a 
CKAP2L                0.020   cytoskeleton associated protein 2-like 
RUNX1                 0.020   runt-related transcription factor 1 isoform AML1a [...
RUNX1                 0.020   runt-related transcription factor 1 isoform AML1c [H...
RUNX1                 0.020   runt-related transcription factor 1 isoform AML1b [H...
C18orf24              0.016   spindle and KT associated 1 
C18orf24              0.016   spindle and KT associated 1 
GRAMD1A               0.016   GRAM domain containing 1A isoform 2 
GRAMD1A               0.016   GRAM domain containing 1A isoform 1 
RAB11FIP5             0.010   RAB11 family interacting protein 5 (class I) 
PGLYRP4               0.010   peptidoglycan recognition protein-I-beta precursor [...
REV1                  0.010   REV1-like isoform 2 
REV1                  0.010   REV1-like isoform 1 
MYCBP2                0.010   MYC binding protein 2 
ARHGAP26              0.007   GTPase regulator associated with the focal adhesion...
ARHGAP26              0.007   GTPase regulator associated with the focal adhesion k...
C16orf11              0.007   hypothetical protein LOC146325 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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