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Search of human proteins with 169234667
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169234667 transmembrane protein 39B [Homo sapiens]
(492 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169234667 transmembrane protein 39B [Homo sapiens] 1012 0.0
gi|8922756 transmembrane protein 39A [Homo sapiens] 503 e-142
gi|109689723 abl interactor 2 [Homo sapiens] 33 0.45
gi|239753797 PREDICTED: hypothetical protein [Homo sapiens] 33 0.59
gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo ... 33 0.59
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.77
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.77
gi|189217876 sal-like 1 isoform b [Homo sapiens] 32 1.0
gi|118442837 sal-like 1 isoform a [Homo sapiens] 32 1.0
gi|62955044 F-box protein 42 [Homo sapiens] 32 1.7
gi|187761334 hypothetical protein LOC57828 [Homo sapiens] 31 2.2
gi|239753760 PREDICTED: hypothetical protein, partial [Homo sapi... 31 2.2
gi|239742226 PREDICTED: hypothetical protein [Homo sapiens] 31 2.2
gi|157909822 pragmin [Homo sapiens] 31 2.2
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 31 2.9
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 31 2.9
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 31 2.9
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 31 2.9
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 31 2.9
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 31 2.9
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 31 2.9
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 31 2.9
gi|6912458 calcineurin binding protein 1 [Homo sapiens] 31 2.9
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 31 2.9
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 31 2.9
gi|8923040 CDKN2A interacting protein [Homo sapiens] 30 3.8
gi|194363768 homeobox D9 [Homo sapiens] 30 5.0
gi|31881630 prostaglandin E receptor 2 (subtype EP2), 53kDa [Hom... 30 5.0
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 30 6.5
gi|44771211 mediator complex subunit 13-like [Homo sapiens] 30 6.5
>gi|169234667 transmembrane protein 39B [Homo sapiens]
Length = 492
Score = 1012 bits (2616), Expect = 0.0
Identities = 492/492 (100%), Positives = 492/492 (100%)
Query: 1 MGGRRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQT 60
MGGRRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQT
Sbjct: 1 MGGRRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQT 60
Query: 61 VVPLQHCKIPELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHPPSHTSLNFH 120
VVPLQHCKIPELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHPPSHTSLNFH
Sbjct: 61 VVPLQHCKIPELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHPPSHTSLNFH 120
Query: 121 LIDFNLLMVTTIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLI 180
LIDFNLLMVTTIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLI
Sbjct: 121 LIDFNLLMVTTIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLI 180
Query: 181 HLFRTYSFLNLLFLCYPFGMYIPFLQLNCDLRKTSLFNHMASMGPREAVSGLAKSRDYLL 240
HLFRTYSFLNLLFLCYPFGMYIPFLQLNCDLRKTSLFNHMASMGPREAVSGLAKSRDYLL
Sbjct: 181 HLFRTYSFLNLLFLCYPFGMYIPFLQLNCDLRKTSLFNHMASMGPREAVSGLAKSRDYLL 240
Query: 241 TLRETWKQHTRQLYGPDAMPTHACCLSPSLIRSEVEFLKMDFNWRMKEVLVSSMLSAYYV 300
TLRETWKQHTRQLYGPDAMPTHACCLSPSLIRSEVEFLKMDFNWRMKEVLVSSMLSAYYV
Sbjct: 241 TLRETWKQHTRQLYGPDAMPTHACCLSPSLIRSEVEFLKMDFNWRMKEVLVSSMLSAYYV 300
Query: 301 AFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGCWQKV 360
AFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGCWQKV
Sbjct: 301 AFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGCWQKV 360
Query: 361 DPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSKPLR 420
DPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSKPLR
Sbjct: 361 DPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSKPLR 420
Query: 421 ILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYSYS 480
ILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYSYS
Sbjct: 421 ILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYSYS 480
Query: 481 ASPQRDLDHRFS 492
ASPQRDLDHRFS
Sbjct: 481 ASPQRDLDHRFS 492
>gi|8922756 transmembrane protein 39A [Homo sapiens]
Length = 488
Score = 503 bits (1295), Expect = e-142
Identities = 256/487 (52%), Positives = 335/487 (68%), Gaps = 20/487 (4%)
Query: 2 GGRRGPNRTSYCRNPLCEPGSS-GGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPL-ATQ 59
GGRRGP+R R+ L + GG G+ T R R+ S GL PP+ A
Sbjct: 3 GGRRGPSRQQLSRSALPSLQTLVGGGCGNGTGL--------RNRNGSAIGLPVPPITALI 54
Query: 60 TVVPLQHCKIPELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHPPSHTSLNF 119
T P++HC+IP+LPV S+LFE F L+ALF+ YINIYKTVWWYP +HP S TSLNF
Sbjct: 55 TPGPVRHCQIPDLPVDGSLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNF 114
Query: 120 HLIDFNLLMVTTIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSL 179
HLID++L T++L RR + +++ EA++ G S+ ++L R +LT GW LC +L
Sbjct: 115 HLIDYHLAAFITVMLARRLVWALISEATKAGAASMIHYMVLISARLVLLTLCGWVLCWTL 174
Query: 180 IHLFRTYSFLNLLFLCYPFGMYIPFLQLNCDLRKTSLFN-------HMASMGPREAVSGL 232
++LFR++S LNLLFL YPFG+Y+P + D R L H A V GL
Sbjct: 175 VNLFRSHSVLNLLFLGYPFGVYVPLCCFHQDSRAHLLLTDYNYVVQHEAVEESASTVGGL 234
Query: 233 AKSRDYLLTLRETWKQHTRQLYGPDAMPTHACCLSPSLIRSEVEFLKMDFNWRMKEVLVS 292
AKS+D+L L E+ K+ Q +PTH+C LSP LIR+EVE LK DFN R+KEVL +
Sbjct: 235 AKSKDFLSLLLESLKE---QFNNATPIPTHSCPLSPDLIRNEVECLKADFNHRIKEVLFN 291
Query: 293 SMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAA 352
S+ SAYYVAF+P+ FVK+T YYD RWSCE ++V I+ V+L LLP+ YCDLLHK+AA
Sbjct: 292 SLFSAYYVAFLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLTTQLLPSKYCDLLHKSAA 351
Query: 353 HLGCWQKVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFH 412
HLG WQK++ SN QH W+E +WPQGVLV+HS+ +Y+A+G YNVA+PSDVSH RF+
Sbjct: 352 HLGKWQKLEHGSYSNAPQHIWSENTIWPQGVLVRHSRCLYRAMGPYNVAVPSDVSHARFY 411
Query: 413 FFFSKPLRILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLV 472
F F +PLR+LN+L+L+EG+V+ YQLYSL+ SEKW+ T+S+ALILF NYY FKLLRDR+V
Sbjct: 412 FLFHRPLRLLNLLILIEGSVVFYQLYSLLRSEKWNHTLSMALILFCNYYVLFKLLRDRIV 471
Query: 473 LGKAYSY 479
LG+AYSY
Sbjct: 472 LGRAYSY 478
>gi|109689723 abl interactor 2 [Homo sapiens]
Length = 475
Score = 33.5 bits (75), Expect = 0.45
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 4 RRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQTVVP 63
++ P RT+ SSG S GSH SS RS +R +SG+G P+A T P
Sbjct: 219 QQSPVRTASVNQRNRTYSSSGSSGGSHPSS------RSSSRENSGSGSVGVPIAVPT--P 270
Query: 64 LQHCKIPELPVQ 75
P PVQ
Sbjct: 271 SPPSVFPGHPVQ 282
>gi|239753797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 864
Score = 33.1 bits (74), Expect = 0.59
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 2 GGRRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSV---RSRTRSSSGTGLSSPPLAT 58
GG RGP++ + N LC PG ++ + TSS SV RS ++ + G SSP L+
Sbjct: 483 GGSRGPDQLT--GNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSP 540
Query: 59 QTVVPL 64
PL
Sbjct: 541 SRGSPL 546
>gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo
sapiens]
Length = 894
Score = 33.1 bits (74), Expect = 0.59
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 2 GGRRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSV---RSRTRSSSGTGLSSPPLAT 58
GG RGP++ + N LC PG ++ + TSS SV RS ++ + G SSP L+
Sbjct: 483 GGSRGPDQLT--GNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSP 540
Query: 59 QTVVPL 64
PL
Sbjct: 541 SRGSPL 546
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 32.7 bits (73), Expect = 0.77
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 15 NPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQTVVPLQHCKIPELPV 74
NP +S SS S +SS+S +S S SSS + S PP + P + ++P +P
Sbjct: 77 NPATTTAASSSSSSSSSSSSSSSSASS---SSSSSSSSPPPASPPASSPPRVLELPGVPA 133
Query: 75 QA 76
A
Sbjct: 134 AA 135
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 32.7 bits (73), Expect = 0.77
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 15 NPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQTVVPLQHCKIPELPV 74
NP +S SS S +SS+S +S S SSS + S PP + P + ++P +P
Sbjct: 77 NPATTTAASSSSSSSSSSSSSSSSASS---SSSSSSSSPPPASPPASSPPRVLELPGVPA 133
Query: 75 QA 76
A
Sbjct: 134 AA 135
>gi|189217876 sal-like 1 isoform b [Homo sapiens]
Length = 1227
Score = 32.3 bits (72), Expect = 1.0
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 16 PLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQTVVP 63
P+ SG SSGSH+S+A +S S + S G S+ A T +P
Sbjct: 33 PVANKSGSGTSSGSHSSTAPSSSSSSSSSSGGGGSSSTGTSAITTSLP 80
>gi|118442837 sal-like 1 isoform a [Homo sapiens]
Length = 1324
Score = 32.3 bits (72), Expect = 1.0
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 16 PLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQTVVP 63
P+ SG SSGSH+S+A +S S + S G S+ A T +P
Sbjct: 130 PVANKSGSGTSSGSHSSTAPSSSSSSSSSSGGGGSSSTGTSAITTSLP 177
>gi|62955044 F-box protein 42 [Homo sapiens]
Length = 717
Score = 31.6 bits (70), Expect = 1.7
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 5 RGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLA 57
+GP+ ++ PL GSS GS GS + S+ T R + G G S PP+A
Sbjct: 569 KGPSASAALSPPL---GSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIA 618
>gi|187761334 hypothetical protein LOC57828 [Homo sapiens]
Length = 1159
Score = 31.2 bits (69), Expect = 2.2
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 373 WTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSKPLRILNILLLLEGAV 432
+T M P+G+ N+ G++ + S+ +F + F K L I + GAV
Sbjct: 470 YTSTAMAPKGIFCNPYNNLIFIWGNFLLQ-SSNKENFIYLADFPKELSIKYMARSFRGAV 528
Query: 433 IV--------------YQLYSLMSSEKWHQTISLALILFSNYYA 462
+ Y++Y L S+ W ISL L+ S+ YA
Sbjct: 529 AIVTETEEIWYLLEGSYRVYQLFPSKGWQVHISLKLMQQSSLYA 572
>gi|239753760 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 267
Score = 31.2 bits (69), Expect = 2.2
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 3 GRRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQ-TV 61
G P R S C E GS + S+ +++S R TG+S+PP ++ T
Sbjct: 27 GTSAPRRVSRCTACKLEHELPAGSPAAWPSNWNISSPPDRQLHDPQTGISAPPRGSRCTA 86
Query: 62 VPLQH 66
+ LQH
Sbjct: 87 LNLQH 91
>gi|239742226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 31.2 bits (69), Expect = 2.2
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 3 GRRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQ-TV 61
G P R S C E GS + S+ +++S R TG+S+PP ++ T
Sbjct: 27 GTSAPRRVSRCTACKLEHELPAGSPAAWPSNWNISSPPDRQLHDPQTGISAPPRGSRCTA 86
Query: 62 VPLQH 66
+ LQH
Sbjct: 87 LNLQH 91
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 31.2 bits (69), Expect = 2.2
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 4 RRGPNRTSYC--RNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSP 54
+RGP+ C + P P G S TS A+++S S SG+G SSP
Sbjct: 302 KRGPSFPKECCSQGPTAHPSCLGPKKLSLTSEAAISSDGLSCGSGSGSGASSP 354
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 21 GSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPP 55
GSS GSS S SS S +S SR+ SSS + S P
Sbjct: 92 GSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 29.3 bits (64), Expect = 8.5
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 SSGGSSGSHTSSASVTSVRSRT-RSSSGTGLSSPP 55
S+G SSGS +SSAS S S T RSSS + S P
Sbjct: 90 STGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 21 GSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPP 55
GSS GSS S SS S +S SR+ SSS + S P
Sbjct: 92 GSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 29.3 bits (64), Expect = 8.5
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 SSGGSSGSHTSSASVTSVRSRT-RSSSGTGLSSPP 55
S+G SSGS +SSAS S S T RSSS + S P
Sbjct: 90 STGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 21 GSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPP 55
GSS GSS S SS S +S SR+ SSS + S P
Sbjct: 92 GSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 29.3 bits (64), Expect = 8.5
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 SSGGSSGSHTSSASVTSVRSRT-RSSSGTGLSSPP 55
S+G SSGS +SSAS S S T RSSS + S P
Sbjct: 90 STGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 21 GSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPP 55
GSS GSS S SS S +S SR+ SSS + S P
Sbjct: 92 GSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 29.3 bits (64), Expect = 8.5
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 SSGGSSGSHTSSASVTSVRSRT-RSSSGTGLSSPP 55
S+G SSGS +SSAS S S T RSSS + S P
Sbjct: 90 STGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 21 GSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPP 55
GSS GSS S SS S +S SR+ SSS + S P
Sbjct: 92 GSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 29.3 bits (64), Expect = 8.5
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 SSGGSSGSHTSSASVTSVRSRT-RSSSGTGLSSPP 55
S+G SSGS +SSAS S S T RSSS + S P
Sbjct: 90 STGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 21 GSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPP 55
GSS GSS S SS S +S SR+ SSS + S P
Sbjct: 92 GSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 29.3 bits (64), Expect = 8.5
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 SSGGSSGSHTSSASVTSVRSRT-RSSSGTGLSSPP 55
S+G SSGS +SSAS S S T RSSS + S P
Sbjct: 90 STGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 7 PNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSS 53
PNR+ + + SS SS S +SS+S +S S + SSS + SS
Sbjct: 142 PNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188
Score = 29.3 bits (64), Expect = 8.5
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 22 SSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSP 54
SS SS S +SS+S +S S + SSS T S P
Sbjct: 164 SSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKP 196
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 30.8 bits (68), Expect = 2.9
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 5 RGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSS 53
R N+TS R+ SS SS S +S +S +S S +RSSS + S+
Sbjct: 565 RARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSST 613
>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
Length = 2220
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 29 SHTSSASVTSVRSRTRSSSGTGLSSPPLATQTVVPLQH----CKIP 70
SH+S+ ++ + SSSG GL+SPP T P+ H CK P
Sbjct: 1323 SHSSAGTLPGPGASLPSSSGPGLTSPP---YTATPIDHDYVKCKKP 1365
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 21 GSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPP 55
GSS GSS S SS S +S SR+ SSS + S P
Sbjct: 92 GSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 29.3 bits (64), Expect = 8.5
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 SSGGSSGSHTSSASVTSVRSRT-RSSSGTGLSSPP 55
S+G SSGS +SSAS S S T RSSS + S P
Sbjct: 90 STGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 21 GSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPP 55
GSS GSS S SS S +S SR+ SSS + S P
Sbjct: 92 GSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 29.3 bits (64), Expect = 8.5
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 SSGGSSGSHTSSASVTSVRSRT-RSSSGTGLSSPP 55
S+G SSGS +SSAS S S T RSSS + S P
Sbjct: 90 STGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
>gi|8923040 CDKN2A interacting protein [Homo sapiens]
Length = 580
Score = 30.4 bits (67), Expect = 3.8
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 19 EPGSSGGSSG--SHTSS-ASVTSVRSRTRSSSGTGLSSPPLATQTVVPLQHCKIPELPVQ 75
+P S SSG S TSS ASV+S ++ SSSGT L +P ++ T L K V
Sbjct: 309 KPSSETASSGLTSKTSSEASVSSSVAKNSSSSGTSLLTPKSSSSTNTSLLTSKSTS-QVA 367
Query: 76 ASIL 79
AS+L
Sbjct: 368 ASLL 371
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 30.0 bits (66), Expect = 5.0
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 2 GGRRGPNRTSYCRNPLCEPGSSGGSSGSH------TSSASVTSVRSRTRSSSGTGLSSPP 55
GG GP R PG SG ++G H T +A + + T SSS T LSS
Sbjct: 136 GGGGGPGRGP-------SPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSS 188
Query: 56 LATQTVV 62
T+ V
Sbjct: 189 KRTECSV 195
>gi|31881630 prostaglandin E receptor 2 (subtype EP2), 53kDa [Homo
sapiens]
Length = 358
Score = 30.0 bits (66), Expect = 5.0
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 101 KTVWWYPPSHPPSHTSLNFHLIDFNLLMVTTIVLGRRFIGSIVKEASQRGKVSLFRSILL 160
+T W PP P+ +S+ F L+ + L RR+ G + A +R +SLF ++
Sbjct: 14 ETRQWLPPGESPAISSVMFSAGVLGNLIALAL-LARRWRGDVGCSAGRRSSLSLFHVLVT 72
Query: 161 FLTRFTVLTAT 171
L FT L T
Sbjct: 73 ELV-FTDLLGT 82
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 29.6 bits (65), Expect = 6.5
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 2 GGRRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTR--SSSGTGLSSPPLATQ 59
G R + Y EP +SG S S + +A +T R RTR S +G +S P Q
Sbjct: 37 GDPRKETGSRYVAQAGLEPLASGDPSASASHAAGITGSRHRTRLFFPSSSGSASTPQEEQ 96
Query: 60 T 60
T
Sbjct: 97 T 97
>gi|44771211 mediator complex subunit 13-like [Homo sapiens]
Length = 2210
Score = 29.6 bits (65), Expect = 6.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 16 PLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQTVVP 63
PL GS+ +GS + S +S + SSS +G S PP+++ P
Sbjct: 1547 PLAPNGSAAPPAGSAFNPTSNSSSTNPAASSSASGSSVPPVSSSASAP 1594
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,940,364
Number of Sequences: 37866
Number of extensions: 809946
Number of successful extensions: 4016
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3925
Number of HSP's gapped (non-prelim): 80
length of query: 492
length of database: 18,247,518
effective HSP length: 106
effective length of query: 386
effective length of database: 14,233,722
effective search space: 5494216692
effective search space used: 5494216692
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.