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Search of human proteins with 169216528
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 854 0.0
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 850 0.0
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 845 0.0
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 845 0.0
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 112 8e-25
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 107 2e-23
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 107 2e-23
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 107 2e-23
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 105 6e-23
gi|62243734 signal transducing adaptor family member 2 isoform 1... 60 3e-09
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 59 8e-09
gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN... 57 3e-08
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi... 56 5e-08
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 55 1e-07
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 54 2e-07
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 54 3e-07
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 54 3e-07
gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] 52 7e-07
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] 52 7e-07
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] 52 7e-07
gi|28212280 hypothetical protein LOC283579 [Homo sapiens] 52 9e-07
gi|149588643 zinc finger protein 283 [Homo sapiens] 51 2e-06
gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens] 49 1e-05
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] 49 1e-05
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] 49 1e-05
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 48 1e-05
gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo... 48 1e-05
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens] 47 4e-05
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 45 9e-05
gi|193794843 BEN domain containing 2 [Homo sapiens] 45 9e-05
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 854 bits (2207), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW
Sbjct: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
Query: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS
Sbjct: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
Query: 121 WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD
Sbjct: 121 WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
Query: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEDTWGHVRDEDIS 240
FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEDTWGHVRDEDIS
Sbjct: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEDTWGHVRDEDIS 240
Query: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHHSLRPMKQAPLDECSVFVLFCFLLR 300
GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHHSLRPMKQAPLDECSVFVLFCFLLR
Sbjct: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHHSLRPMKQAPLDECSVFVLFCFLLR 300
Query: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH 360
RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH
Sbjct: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH 360
Query: 361 VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402
VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC
Sbjct: 361 VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 850 bits (2195), Expect = 0.0
Identities = 400/402 (99%), Positives = 401/402 (99%)
Query: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW
Sbjct: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
Query: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS
Sbjct: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
Query: 121 WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD
Sbjct: 121 WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
Query: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEDTWGHVRDEDIS 240
FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPE+TWGHVRDEDIS
Sbjct: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
Query: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHHSLRPMKQAPLDECSVFVLFCFLLR 300
GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRH SLRPMKQAPLDECSVFVLFCFLLR
Sbjct: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
Query: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH 360
RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH
Sbjct: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH 360
Query: 361 VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402
VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC
Sbjct: 361 VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 845 bits (2182), Expect = 0.0
Identities = 397/402 (98%), Positives = 400/402 (99%)
Query: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW
Sbjct: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
Query: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS
Sbjct: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
Query: 121 WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
WRLGRVTPS+GQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD
Sbjct: 121 WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
Query: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEDTWGHVRDEDIS 240
FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPE+TWGHVRDEDIS
Sbjct: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
Query: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHHSLRPMKQAPLDECSVFVLFCFLLR 300
GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRH SLRPMKQAPLDECSVFVLFCFLLR
Sbjct: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
Query: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH 360
RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSW YSHAPSRPANFVVLVETVFLH
Sbjct: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH 360
Query: 361 VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402
VDQAGLELLISGDPPTSASQSAGITGV+HWARPVLCVLRLFC
Sbjct: 361 VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 845 bits (2182), Expect = 0.0
Identities = 397/402 (98%), Positives = 400/402 (99%)
Query: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW
Sbjct: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
Query: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS
Sbjct: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
Query: 121 WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
WRLGRVTPS+GQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD
Sbjct: 121 WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
Query: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEDTWGHVRDEDIS 240
FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPE+TWGHVRDEDIS
Sbjct: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
Query: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHHSLRPMKQAPLDECSVFVLFCFLLR 300
GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRH SLRPMKQAPLDECSVFVLFCFLLR
Sbjct: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
Query: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH 360
RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSW YSHAPSRPANFVVLVETVFLH
Sbjct: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH 360
Query: 361 VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402
VDQAGLELLISGDPPTSASQSAGITGV+HWARPVLCVLRLFC
Sbjct: 361 VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 112 bits (279), Expect = 8e-25
Identities = 60/91 (65%), Positives = 67/91 (73%)
Query: 302 SFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLHV 361
SF + +AG++ DL SLQP PPGFKRFS LSLP+SW+Y H PS P NF + VET F HV
Sbjct: 989 SFQESLRAGMQWCDLSSLQPPPPGFKRFSHLSLPNSWNYRHLPSCPTNFCIFVETGFHHV 1048
Query: 362 DQAGLELLISGDPPTSASQSAGITGVSHWAR 392
QA LELL SG SASQSAGITGVSH AR
Sbjct: 1049 GQACLELLTSGGLLASASQSAGITGVSHHAR 1079
>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 107 bits (266), Expect = 2e-23
Identities = 57/104 (54%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Query: 291 VFVLFCFLLRRSFALAPQAGVR-CRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPAN 349
VF+LFCF+ QAGV+ C DL SLQP PPGF SCLSLP SWDY H P PAN
Sbjct: 117 VFILFCFVFEMESCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLPGSWDYRHPPPHPAN 173
Query: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARP 393
F + QAG++LL + D PT ASQS ITGVSH A+P
Sbjct: 174 FCIFSRDEVSTPTQAGVKLLTASDLPTLASQSVAITGVSHHAQP 217
>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 107 bits (266), Expect = 2e-23
Identities = 57/104 (54%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Query: 291 VFVLFCFLLRRSFALAPQAGVR-CRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPAN 349
VF+LFCF+ QAGV+ C DL SLQP PPGF SCLSLP SWDY H P PAN
Sbjct: 117 VFILFCFVFEMESCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLPGSWDYRHPPPHPAN 173
Query: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARP 393
F + QAG++LL + D PT ASQS ITGVSH A+P
Sbjct: 174 FCIFSRDEVSTPTQAGVKLLTASDLPTLASQSVAITGVSHHAQP 217
>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 107 bits (266), Expect = 2e-23
Identities = 57/104 (54%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Query: 291 VFVLFCFLLRRSFALAPQAGVR-CRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPAN 349
VF+LFCF+ QAGV+ C DL SLQP PPGF SCLSLP SWDY H P PAN
Sbjct: 117 VFILFCFVFEMESCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLPGSWDYRHPPPHPAN 173
Query: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARP 393
F + QAG++LL + D PT ASQS ITGVSH A+P
Sbjct: 174 FCIFSRDEVSTPTQAGVKLLTASDLPTLASQSVAITGVSHHAQP 217
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 105 bits (263), Expect = 6e-23
Identities = 55/78 (70%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANF-VVLVETVFLHVDQAGL 366
QAGV+ R+L SLQPLPPGFK+FSCL LPSSWDY P ANF + LVET F HV AGL
Sbjct: 363 QAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHAGL 422
Query: 367 ELLISGDPPTSASQSAGI 384
ELLIS DPPTS SQS G+
Sbjct: 423 ELLISRDPPTSGSQSVGL 440
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 60.1 bits (144), Expect = 3e-09
Identities = 33/45 (73%), Positives = 33/45 (73%)
Query: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVL 398
VE F HV QAGLELL S DPPTSASQSAGITGVSH P L L
Sbjct: 358 VEKGFHHVAQAGLELLTSSDPPTSASQSAGITGVSHHTWPHLSSL 402
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 58.9 bits (141), Expect = 8e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYS 341
+AGV+ DL SLQPLPP FKRFSCLSL SSWDYS
Sbjct: 25 KAGVQWHDLGSLQPLPPRFKRFSCLSLQSSWDYS 58
>gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
synthase isoform 3 [Homo sapiens]
Length = 500
Score = 57.0 bits (136), Expect = 3e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Query: 311 VRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRP 347
++C DL SLQP PPGF F+CLSLPSSWDY P P
Sbjct: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
sapiens]
Length = 167
Score = 56.2 bits (134), Expect = 5e-08
Identities = 30/50 (60%), Positives = 36/50 (72%)
Query: 351 VVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRL 400
VVL +T ++ QAGLELL S D P SASQSAGITGVSH +P L ++ L
Sbjct: 118 VVLDKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPALLLISL 167
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 54.7 bits (130), Expect = 1e-07
Identities = 34/54 (62%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 332 LSLPSSWDYSHAPSRPANFVVLVETVFLHVDQAGLELLISGDPPTSASQSAGIT 385
L LP S D+ FV LVE F HV QAGLELLIS D PTSASQSAGIT
Sbjct: 21 LHLPDSSDFQLI------FVFLVEMGFHHVGQAGLELLISSDLPTSASQSAGIT 68
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 54.3 bits (129), Expect = 2e-07
Identities = 29/42 (69%), Positives = 30/42 (71%)
Query: 347 PANFVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVS 388
P L+ETVF HV QAGLELL SGD PT ASQSAGIT S
Sbjct: 229 PGMTTTLLETVFHHVSQAGLELLTSGDLPTLASQSAGITASS 270
>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
Length = 586
Score = 53.5 bits (127), Expect = 3e-07
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLR 399
+ET HV Q+ LELL+S DPP SASQSAGI GV H RPV C L+
Sbjct: 106 LETESGHVTQSDLELLLSSDPPASASQSAGIRGVRHHPRPV-CSLK 150
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 53.5 bits (127), Expect = 3e-07
Identities = 27/32 (84%), Positives = 27/32 (84%)
Query: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGIT 385
VET F HVDQ GLELL SGDPPT ASQSAGIT
Sbjct: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 52.4 bits (124), Expect = 7e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Query: 360 HVDQAGLELLISGDPPTSASQSAGITGVSHWAR 392
HV QAGLELL S DPPTSASQ+A ITGVSH A+
Sbjct: 5 HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 52.4 bits (124), Expect = 7e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Query: 360 HVDQAGLELLISGDPPTSASQSAGITGVSHWAR 392
HV QAGLELL S DPPTSASQ+A ITGVSH A+
Sbjct: 5 HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 52.4 bits (124), Expect = 7e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Query: 360 HVDQAGLELLISGDPPTSASQSAGITGVSHWAR 392
HV QAGLELL S DPPTSASQ+A ITGVSH A+
Sbjct: 5 HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
>gi|28212280 hypothetical protein LOC283579 [Homo sapiens]
Length = 122
Score = 52.0 bits (123), Expect = 9e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 363 QAGLELLISGDPPTSASQSAGITGVSHWARP 393
QAGLELL S +PP SASQSAGITGVSH ARP
Sbjct: 38 QAGLELLGSSNPPASASQSAGITGVSHCARP 68
>gi|149588643 zinc finger protein 283 [Homo sapiens]
Length = 679
Score = 50.8 bits (120), Expect = 2e-06
Identities = 25/34 (73%), Positives = 26/34 (76%)
Query: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYS 341
QAGV+ DL SLQ PPGF FSCLSL SSWDYS
Sbjct: 8 QAGVQWCDLGSLQAPPPGFTLFSCLSLLSSWDYS 41
>gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens]
Length = 176
Score = 48.5 bits (114), Expect = 1e-05
Identities = 25/36 (69%), Positives = 27/36 (75%)
Query: 358 FLHVDQAGLELLISGDPPTSASQSAGITGVSHWARP 393
F +V QA LELL S +PP SASQS GITG SH ARP
Sbjct: 3 FHYVAQADLELLTSSNPPASASQSTGITGGSHRARP 38
>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
Length = 606
Score = 48.5 bits (114), Expect = 1e-05
Identities = 28/43 (65%), Positives = 30/43 (69%)
Query: 355 ETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCV 397
E F H QA LELL S D P SASQSAGITGV+H A+P L V
Sbjct: 76 EMGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQPGLNV 118
>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
Length = 629
Score = 48.5 bits (114), Expect = 1e-05
Identities = 28/43 (65%), Positives = 30/43 (69%)
Query: 355 ETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCV 397
E F H QA LELL S D P SASQSAGITGV+H A+P L V
Sbjct: 76 EMGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQPGLNV 118
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 48.1 bits (113), Expect = 1e-05
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDY 340
Q GV+ D+ SLQPL F++FSCLSLPS+WDY
Sbjct: 783 QPGVQWCDISSLQPLTSRFQQFSCLSLPSTWDY 815
>gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo
sapiens]
Length = 165
Score = 48.1 bits (113), Expect = 1e-05
Identities = 22/29 (75%), Positives = 24/29 (82%)
Query: 307 PQAGVRCRDLDSLQPLPPGFKRFSCLSLP 335
PQAGV+ RDL SLQP PPGFK+ CLSLP
Sbjct: 33 PQAGVQWRDLGSLQPPPPGFKQVFCLSLP 61
>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
Length = 819
Score = 46.6 bits (109), Expect = 4e-05
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 310 GVRCRDLDSLQPLPPGFKRFSCLSLPSSWDY 340
GV+ D+ SLQPL F++FSCLSLPS+WDY
Sbjct: 779 GVQWCDISSLQPLTSRFQQFSCLSLPSTWDY 809
>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
Length = 858
Score = 45.4 bits (106), Expect = 9e-05
Identities = 33/74 (44%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 334 LPSSWDYSHAPSRPANFVV----LVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSH 389
+P+ W SR F +V+ V QAGLELL+S P ASQSAGITG+SH
Sbjct: 670 IPALWKAEAGRSRGQEFETSLANIVKPQSCCVAQAGLELLVSSSPSALASQSAGITGMSH 729
Query: 390 --WARPVLCVLRLF 401
W L VL LF
Sbjct: 730 CTW----LVVLFLF 739
>gi|193794843 BEN domain containing 2 [Homo sapiens]
Length = 799
Score = 45.4 bits (106), Expect = 9e-05
Identities = 23/40 (57%), Positives = 25/40 (62%)
Query: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRP 347
QAGV+ D SLQP P G K+F LSLPSSWD P P
Sbjct: 86 QAGVQWHDHSSLQPQPLGLKQFFHLSLPSSWDDRRTPPCP 125
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,881,597
Number of Sequences: 37866
Number of extensions: 1095420
Number of successful extensions: 2725
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2578
Number of HSP's gapped (non-prelim): 158
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.