Guide to the Human Genome
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Name: ZSCAN5A Sequence: fasta or formatted (496aa) NCBI GI: 13236532
Description:

zinc finger and SCAN domain containing 5A

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         24           2
 C cysteine            3.6         18           1
 D aspartate           5.2         26           2
 E glutamate           7.7         38           2
 F phenylalanine       2.8         14           1
 G glycine             5.0         25           1
 H histidine           4.0         20           1
 I isoleucine          2.8         14           1
 K lysine              7.7         38           2
 L leucine             8.5         42           2
 M methionine          2.6         13           2
 N asparagine          3.4         17           2
 P proline             7.7         38           2
 Q glutamine           5.8         29           1
 R arginine            7.1         35           2
 S serine             10.1         50           2
 T threonine           4.4         22           1
 V valine              5.0         25           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger and SCAN domain containing 5A 
ZSCAN5C               0.832   PREDICTED: zinc finger and SCAN domain containing 5...
ZSCAN5C               0.830   PREDICTED: zinc finger and SCAN domain containing 5...
ZSCAN5C               0.827   PREDICTED: zinc finger and SCAN domain containing 5...
ZSCAN5B               0.777   zinc finger and SCAN domain containing 5B 
LOC646698             0.680   PREDICTED: similar to hCG92381 
LOC646698             0.680   PREDICTED: similar to hCG92381 
LOC646698             0.679   PREDICTED: hypothetical protein LOC646698 
ZNF263                0.182   zinc finger protein 263 
ZNF500                0.172   zinc finger protein 500 
ZNF782                0.146   zinc finger protein 782 
ZNF182                0.146   zinc finger protein 21 isoform 2 
ZNF182                0.146   zinc finger protein 21 isoform 1 
LOC344065             0.144   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.144   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.144   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF28                 0.143   zinc finger protein 28 
LOC100287429          0.142   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.142   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.142   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.142   zinc finger protein 84 
ZNF84                 0.142   zinc finger protein 84 
ZNF554                0.142   zinc finger protein 554 
ZNF470                0.142   zinc finger protein 470 
ZNF41                 0.141   zinc finger protein 41 
ZNF41                 0.141   zinc finger protein 41 
ZNF605                0.141   zinc finger protein 605 
ZNF658                0.141   zinc finger protein 658 
LOC100287163          0.141   PREDICTED: hypothetical protein XP_002343923 
ZNF717                0.141   zinc finger protein 717 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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