Guide to the Human Genome
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Name: ZNF560 Sequence: fasta or formatted (790aa) NCBI GI: 124517687
Description:

zinc finger protein 560

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         37           2
 C cysteine            5.8         46           1
 D aspartate           3.5         28           1
 E glutamate           7.3         58           5
 F phenylalanine       5.1         40           1
 G glycine             5.9         47           1
 H histidine           5.2         41           1
 I isoleucine          3.0         24           2
 K lysine             10.3         81           2
 L leucine             7.7         61           2
 M methionine          1.4         11           1
 N asparagine          3.7         29           2
 P proline             2.9         23           1
 Q glutamine           4.4         35           2
 R arginine            4.9         39           2
 S serine              6.8         54           3
 T threonine           7.6         60           1
 V valine              4.2         33           2
 W tryptophan          1.1          9           1
 Y tyrosine            4.3         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 560 
ZNF778                0.365   zinc finger protein 778 
ZNF624                0.338   zinc finger protein 624 
ZNF420                0.333   zinc finger protein 420 
ZNF266                0.332   zinc finger protein 266 
ZNF266                0.332   zinc finger protein 266 
ZNF43                 0.330   zinc finger protein 43 
ZNF709                0.330   zinc finger protein 709 isoform a 
ZNF426                0.325   zinc finger protein 426 
ZNF208                0.323   zinc finger protein 208 
ZNF726                0.322   PREDICTED: zinc finger protein 726 
ZNF726                0.322   PREDICTED: zinc finger protein 726 
ZNF726                0.322   PREDICTED: zinc finger protein 726 
LOC100287429          0.319   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.319   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.319   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.319   zinc finger protein 84 
ZNF84                 0.319   zinc finger protein 84 
ZNF160                0.318   zinc finger protein 160 
ZNF160                0.318   zinc finger protein 160 
ZNF160                0.318   zinc finger protein 160 
ZNF91                 0.318   zinc finger protein 91 
ZNF699                0.317   zinc finger protein 699 
ZNF569                0.317   zinc finger protein 569 
ZNF595                0.316   zinc finger protein 595 
ZNF347                0.316   zinc finger protein 347 
ZNF184                0.315   zinc finger protein 184 
ZNF135                0.314   zinc finger protein 135 
ZNF546                0.313   zinc finger protein 546 
ZNF14                 0.313   zinc finger protein 14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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