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Search of human proteins with 112380628
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|112380628 lysosomal-associated membrane protein 1 [Homo
sapiens]
(417 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens] 826 0.0
gi|7669503 lysosomal-associated membrane protein 2 isoform B pre... 267 1e-71
gi|4504957 lysosomal-associated membrane protein 2 isoform A pre... 260 1e-69
gi|169790833 lysosomal-associated membrane protein 2 isoform C p... 254 8e-68
gi|91199550 CD68 antigen isoform B [Homo sapiens] 96 8e-20
gi|91199548 CD68 antigen isoform A [Homo sapiens] 96 8e-20
gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens] 95 1e-19
gi|7110633 chromosome 20 open reading frame 103 precursor [Homo ... 40 0.003
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 36 0.074
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 35 0.097
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 35 0.097
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 35 0.097
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 35 0.097
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 35 0.13
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 35 0.13
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 35 0.13
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 35 0.13
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 34 0.22
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 34 0.22
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 33 0.37
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 33 0.37
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 33 0.37
gi|38788260 bromodomain PHD finger transcription factor isoform ... 33 0.37
gi|38788274 bromodomain PHD finger transcription factor isoform ... 33 0.37
gi|194294554 SET binding protein 1 isoform a [Homo sapiens] 33 0.37
gi|125625357 Sp2 transcription factor [Homo sapiens] 33 0.37
gi|71043876 undifferentiated embryonic cell transcription factor... 33 0.37
gi|24497513 homeobox A3 isoform a [Homo sapiens] 33 0.48
gi|13562112 homeobox A3 isoform a [Homo sapiens] 33 0.48
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 33 0.48
>gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens]
Length = 417
Score = 826 bits (2134), Expect = 0.0
Identities = 417/417 (100%), Positives = 417/417 (100%)
Query: 1 MAAPGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGP 60
MAAPGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGP
Sbjct: 1 MAAPGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGP 60
Query: 61 KNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVY 120
KNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVY
Sbjct: 61 KNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVY 120
Query: 121 NLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLS 180
NLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLS
Sbjct: 121 NLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLS 180
Query: 181 NSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGTNGTCLLASMGLQL 240
NSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGTNGTCLLASMGLQL
Sbjct: 181 NSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGTNGTCLLASMGLQL 240
Query: 241 NLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNASSSRFF 300
NLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNASSSRFF
Sbjct: 241 NLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNASSSRFF 300
Query: 301 LQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVNIFKVWVQ 360
LQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVNIFKVWVQ
Sbjct: 301 LQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVNIFKVWVQ 360
Query: 361 AFKVEGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAYLVGRKRSHAGYQTI 417
AFKVEGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAYLVGRKRSHAGYQTI
Sbjct: 361 AFKVEGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAYLVGRKRSHAGYQTI 417
>gi|7669503 lysosomal-associated membrane protein 2 isoform B
precursor [Homo sapiens]
Length = 410
Score = 267 bits (683), Expect = 1e-71
Identities = 153/418 (36%), Positives = 243/418 (58%), Gaps = 21/418 (5%)
Query: 4 PGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGPKNM 63
PGS L+L+ L+LG + + + + + N T C+ A + F+V Y+T +
Sbjct: 10 PGSG-----LVLVCLVLGAVRSYALELNLTDSENAT-CLYAKWQMNFTVRYET-TNKTYK 62
Query: 64 TFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVYNLS 123
T + TV N S CG ++ + P + + FG G + NFT+ A+ YS+ +SF YN
Sbjct: 63 TVTISDHGTVTYNGSICG-DDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNTG 121
Query: 124 DTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLSNSS 183
D FP+A K I TV+ + IR ++ +RC S + + N+V D +QA++ N +
Sbjct: 122 DNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNGT 181
Query: 184 FSRGETRCEQDRPSPTTAPP---APPSPSPSPVPKS-PSVDKYNVSGTNGTCLLASMGLQ 239
S E C++D+ S T AP PSP+ +P PK P Y+V+ N TCLLA+MGLQ
Sbjct: 182 VSTNEFLCDKDKTS-TVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
Query: 240 LNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNASSSRF 299
LN+T ++ V ++NINPN T ++GSC +H L L+S L F F + + +RF
Sbjct: 241 LNITQDK-----VASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVK-NENRF 294
Query: 300 FLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVNIFKVWV 359
+L+ + ++ L + F AN +L A +G+SY CN E+ V V+ AF +N F + V
Sbjct: 295 YLKEVNISMYLVNGS--VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRV 352
Query: 360 QAFKVEGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAYLVGRKRSHAGYQTI 417
Q F V G++ + +EC LD++++LIPI VG L+GL+++++IAY++GR++S+AGYQT+
Sbjct: 353 QPFNVTQGKYSTAQECSLDDDTILIPIIVGAGLSGLIIVIVIAYVIGRRKSYAGYQTL 410
>gi|4504957 lysosomal-associated membrane protein 2 isoform A
precursor [Homo sapiens]
Length = 410
Score = 260 bits (665), Expect = 1e-69
Identities = 151/416 (36%), Positives = 237/416 (56%), Gaps = 21/416 (5%)
Query: 4 PGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGPKNM 63
PGS L+L+ L+LG + + + + + N T C+ A + F+V Y+T +
Sbjct: 10 PGSG-----LVLVCLVLGAVRSYALELNLTDSENAT-CLYAKWQMNFTVRYET-TNKTYK 62
Query: 64 TFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVYNLS 123
T + TV N S CG ++ + P + + FG G + NFT+ A+ YS+ +SF YN
Sbjct: 63 TVTISDHGTVTYNGSICG-DDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNTG 121
Query: 124 DTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLSNSS 183
D FP+A K I TV+ + IR ++ +RC S + + N+V D +QA++ N +
Sbjct: 122 DNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNGT 181
Query: 184 FSRGETRCEQDRPSPTTAPP---APPSPSPSPVPKS-PSVDKYNVSGTNGTCLLASMGLQ 239
S E C++D+ S T AP PSP+ +P PK P Y+V+ N TCLLA+MGLQ
Sbjct: 182 VSTNEFLCDKDKTS-TVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
Query: 240 LNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNASSSRF 299
LN+T ++ V ++NINPN T ++GSC +H L L+S L F F + + +RF
Sbjct: 241 LNITQDK-----VASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVK-NENRF 294
Query: 300 FLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVNIFKVWV 359
+L+ + ++ L + F AN +L A +G+SY CN E+ V V+ AF +N F + V
Sbjct: 295 YLKEVNISMYLVNGS--VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRV 352
Query: 360 QAFKVEGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAYLVGRKRSHAGYQ 415
Q F V G++ + ++C D+++ L+PIAVG ALAG++++VL+AY +G K HAGY+
Sbjct: 353 QPFNVTQGKYSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYE 408
>gi|169790833 lysosomal-associated membrane protein 2 isoform C
precursor [Homo sapiens]
Length = 411
Score = 254 bits (650), Expect = 8e-68
Identities = 151/419 (36%), Positives = 236/419 (56%), Gaps = 22/419 (5%)
Query: 4 PGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGPKNM 63
PGS L+L+ L+LG + + + + + N T C+ A + F+V Y+T +
Sbjct: 10 PGSG-----LVLVCLVLGAVRSYALELNLTDSENAT-CLYAKWQMNFTVRYET-TNKTYK 62
Query: 64 TFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVYNLS 123
T + TV N S CG ++ + P + + FG G + NFT+ A+ YS+ +SF YN
Sbjct: 63 TVTISDHGTVTYNGSICG-DDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNTG 121
Query: 124 DTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLSNSS 183
D FP+A K I TV+ + IR ++ +RC S + + N+V D +QA++ N +
Sbjct: 122 DNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNGT 181
Query: 184 FSRGETRCEQDRPSPTTAP---PAPPSPSPSPVPK-SPSVDKYNVSGTNGTCLLASMGLQ 239
S E C++D+ S T AP PSP+ +P PK P Y+V+ N TCLLA+MGLQ
Sbjct: 182 VSTNEFLCDKDKTS-TVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
Query: 240 LNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNASSSRF 299
LN+T ++ V ++NINPN T ++GSC +H L L+S L F F + + +RF
Sbjct: 241 LNITQDK-----VASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVK-NENRF 294
Query: 300 FLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVNIFKVWV 359
+L+ + ++ L F AN +L A +G+SY CN E+ V V+ AF +N F + V
Sbjct: 295 YLKEVNISMYL--VNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRV 352
Query: 360 QAFKVEGGQFGSVEECLLDEN-SMLIPIAVGGALAGLVLIVLIAYLVGRKRSHAGYQTI 417
Q F V G++ + EEC D + + LIP+AVG AL L+++V I+Y++GR++S GYQ++
Sbjct: 353 QPFNVTQGKYSTAEECSADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV 411
>gi|91199550 CD68 antigen isoform B [Homo sapiens]
Length = 327
Score = 95.5 bits (236), Expect = 8e-20
Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 15/254 (5%)
Query: 167 TVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSP-SVDKYNVS 225
T + +AT+ ++++ S G T ++A P PP PSPSP P S ++ Y +
Sbjct: 86 TTSHGNATVHPTSNSTATSPGFT---------SSAHPEPPPPSPSPSPTSKETIGDYTWT 136
Query: 226 GTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSC-GAHLVTLELHSEGTT 284
+ C+ +Q+ + Y + + +NPNKT GSC GAH L G
Sbjct: 137 NGSQPCVHLQAQIQIRVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHL 196
Query: 285 VLLFQFGMNASSSRFFLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHV 344
F + ++ N P A F A N SLR LQA +G S+ C + +
Sbjct: 197 SFGFMQDLQQKVVYLSYMAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSC-SNSSI 255
Query: 345 RVTKAFSVNIFKVWVQAFKV-EGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAY 403
++ A +++ + +QA ++ G FG C D S+L+P+ +G L GL+ +VLIA+
Sbjct: 256 ILSPAVHLDLLSLRLQAAQLPHTGVFGQSFSCPSD-RSILLPLIIGLILLGLLALVLIAF 314
Query: 404 LVGRKRSHAGYQTI 417
+ R+R A YQ +
Sbjct: 315 CIIRRRPSA-YQAL 327
>gi|91199548 CD68 antigen isoform A [Homo sapiens]
Length = 354
Score = 95.5 bits (236), Expect = 8e-20
Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 15/254 (5%)
Query: 167 TVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSP-SVDKYNVS 225
T + +AT+ ++++ S G T ++A P PP PSPSP P S ++ Y +
Sbjct: 113 TTSHGNATVHPTSNSTATSPGFT---------SSAHPEPPPPSPSPSPTSKETIGDYTWT 163
Query: 226 GTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSC-GAHLVTLELHSEGTT 284
+ C+ +Q+ + Y + + +NPNKT GSC GAH L G
Sbjct: 164 NGSQPCVHLQAQIQIRVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHL 223
Query: 285 VLLFQFGMNASSSRFFLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHV 344
F + ++ N P A F A N SLR LQA +G S+ C + +
Sbjct: 224 SFGFMQDLQQKVVYLSYMAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSC-SNSSI 282
Query: 345 RVTKAFSVNIFKVWVQAFKV-EGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAY 403
++ A +++ + +QA ++ G FG C D S+L+P+ +G L GL+ +VLIA+
Sbjct: 283 ILSPAVHLDLLSLRLQAAQLPHTGVFGQSFSCPSD-RSILLPLIIGLILLGLLALVLIAF 341
Query: 404 LVGRKRSHAGYQTI 417
+ R+R A YQ +
Sbjct: 342 CIIRRRPSA-YQAL 354
>gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens]
Length = 416
Score = 95.1 bits (235), Expect = 1e-19
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 7/252 (2%)
Query: 166 VTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPSVDKYNVS 225
+++ LH +T + + G T + P P+ +P P S Y V
Sbjct: 172 LSIALHKSTTGQKPVQPTHAPGTTAAAHNTTRTAAPASTVPGPTLAPQPSSVKTGIYQVL 231
Query: 226 GTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTV 285
+ C+ A MG+QL + +++ + R NI+PN T ASG+CG L L+ +G V
Sbjct: 232 NGSRLCIKAEMGIQL-IVQDKESVFSPRRYFNIDPNATQASGNCGTRKSNLLLNFQGGFV 290
Query: 286 LLFQFGMNASSSRFFLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVR 345
L F + S G L P+ ++ ++ Q VG+S+KC +E+ ++
Sbjct: 291 NL-TFTKDEESYYISEVGAYLTVSDPET---IYQGIKHAVVMFQTAVGHSFKCVSEQSLQ 346
Query: 346 VTKAFSVNIFKVWVQAFKVEGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAYLV 405
++ V V +QAF E FG+V+EC D ++++P+ +G + GL L+ + Y +
Sbjct: 347 LSAHLQVKTTDVQLQAFDFEDDHFGNVDECSSD-YTIVLPV-IGAIVVGLCLMGMGVYKI 404
Query: 406 GRKRSHAGYQTI 417
+ +GYQ I
Sbjct: 405 RLRCQSSGYQRI 416
>gi|7110633 chromosome 20 open reading frame 103 precursor [Homo
sapiens]
Length = 280
Score = 40.4 bits (93), Expect = 0.003
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 29/199 (14%)
Query: 19 LLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGPKNMTFDLPSDATVVLNRS 78
L GL +F+V+ NGT C+MA F+A F V YD + N + A + L R
Sbjct: 36 LSGLSTNPEKDIFVVRE-NGTTCLMAEFAAKFIVPYDVWA--SNYVDLITEQADIALTRG 92
Query: 79 S-----CGKENTSDPSLVIAFGRGHTLTLNFTRNATRYS--------VQLMSFVYNLSDT 125
+ CG ++ V R + L + F + + S + + FVY+ S+
Sbjct: 93 AEVKGRCG--HSQSELQVFWVDRAYALKMLFVKESHNMSKGPEATWRLSKVQFVYDSSEK 150
Query: 126 HLFPNASSKEIKTVES--ITDIRADIDKKYRCVSGTQVHM------NNVTVTLHDATIQA 177
F +A S T S ++ + K Y C + + + VT+ L IQ
Sbjct: 151 THFKDAVSAGKHTANSHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQP 210
Query: 178 Y--LSNSSFSRGETRCEQD 194
+ +S+ FS E +C D
Sbjct: 211 FDIISDFVFSE-EHKCPVD 228
Score = 33.9 bits (76), Expect = 0.28
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 325 LRALQATVGNSYKCNAEEHVRVT-----KAFSVNIFKVWVQAFK-VEGGQFGSVEECLLD 378
L AL G SY+C A++ + + K ++ + V +Q F + F +C +D
Sbjct: 169 LSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKCPVD 228
Query: 379 ENSML---IPIAVGGALAGLVLIVLIAYLVGRK 408
E L +P+ +G L ++++ L Y V K
Sbjct: 229 EREQLEETLPLILGLILGLVIMVTLAIYHVHHK 261
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 35.8 bits (81), Expect = 0.074
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSPSVDKYNV 224
PSP+++ P+PP P P P P +P ++++
Sbjct: 199 PSPSSSSPSPPPPPPPPAPPAPPAPRFDI 227
Score = 33.9 bits (76), Expect = 0.28
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 192 EQDRPSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGTNGTCLLASMGLQLNLTYERKDNTT 251
++DR S PP +PS P PK P S ++ +C + LQ + ++ +
Sbjct: 787 DRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVLIREGVS 846
Query: 252 VTRLLNINPNKTSASGSCGA 271
T P K +AS G+
Sbjct: 847 ST-----TPAKDAASAGLGS 861
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 35.4 bits (80), Expect = 0.097
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 37/164 (22%)
Query: 55 DTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQ 114
DT P + T PS + + SS G +T A G T L+F + +T
Sbjct: 1033 DTTLLPASTTTSGPSQESTT-SHSSSGSTDT-------ALSPGSTTALSFGQEST----- 1079
Query: 115 LMSFVYNLSDTH--LFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHD 172
+F N TH LFP+++ T I + + T+VH + +
Sbjct: 1080 --TFHSNPGSTHTTLFPDST-----TSSGIVE------------ASTRVHSSTGSPR--- 1117
Query: 173 ATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKS 216
T+ S S +GE+ Q P+ T P+PPS + +PV +S
Sbjct: 1118 TTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEES 1161
Score = 34.7 bits (78), Expect = 0.16
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 25/150 (16%)
Query: 67 LPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVYNLSDTH 126
LP+ T + ++S S A G T L+F + +T + S + T
Sbjct: 3677 LPASTTTSGSSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSSPGS-----THTT 3731
Query: 127 LFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLSNSSFSR 186
LFP+++ T I + + T+VH + + T+ S S +
Sbjct: 3732 LFPDST-----TSSGIVE------------ASTRVHSSTGSPR---TTLSPASSTSPGLQ 3771
Query: 187 GETRCEQDRPSPTTAPPAPPSPSPSPVPKS 216
GE+ Q P+ T P+PPS + +PV +S
Sbjct: 3772 GESTAFQTHPASTHTTPSPPSTATAPVEES 3801
Score = 33.5 bits (75), Expect = 0.37
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 55 DTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQ 114
DT P + T PS + + SS G +T A G T L+F + +T +
Sbjct: 2116 DTTLLPASTTTSGPSQESTT-SHSSPGSTDT-------ALSPGSTTALSFGQESTTFHSS 2167
Query: 115 LMSFVYNLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDAT 174
S + T LFP+++ T I + + T+VH + + T
Sbjct: 2168 PGS-----THTTLFPDST-----TSSGIVE------------ASTRVHSSTGSPR---TT 2202
Query: 175 IQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKS 216
+ S S +GE+ Q P+ T P+PPS + +PV +S
Sbjct: 2203 LSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEES 2244
Score = 33.1 bits (74), Expect = 0.48
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 55 DTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQ 114
DT P + T PS + + SS G +T A G T L+F + +T +
Sbjct: 2590 DTTLLPASTTTSGPSQESTT-SHSSPGSTDT-------ALSPGSTTALSFGQESTTFHSS 2641
Query: 115 LMSFVYNLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDAT 174
S + T LFP+++ T I + + T+VH + + T
Sbjct: 2642 PGS-----THTTLFPDST-----TSSGIVE------------ASTRVHSSTGSPR---TT 2676
Query: 175 IQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKS 216
+ S S +GE+ Q P+ T P+PPS + +PV +S
Sbjct: 2677 LSPASSTSPGLQGESTTFQTHPASTHTTPSPPSTATAPVEES 2718
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 35.4 bits (80), Expect = 0.097
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 193 QDRPSPTTAPPAPPSPSPSPVPKSP 217
Q RP P+ PP PP PSP P P P
Sbjct: 277 QPRPPPSPPPPPPPPPSPLPPPPPP 301
Score = 33.1 bits (74), Expect = 0.48
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSP 217
PSP PP PPSP P P P P
Sbjct: 282 PSPPPPPPPPPSPLPPPPPPPP 303
Score = 30.8 bits (68), Expect = 2.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSP 217
PSP PP PP P+PS K P
Sbjct: 292 PSPLPPPPPPPPPTPSSTTKLP 313
Score = 28.9 bits (63), Expect = 9.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 195 RPSPTTAPPAPPSPSPSPVPKSP 217
RP P P A P P PSP P P
Sbjct: 267 RPLPPRPPAAQPRPPPSPPPPPP 289
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 35.4 bits (80), Expect = 0.097
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 37/164 (22%)
Query: 55 DTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQ 114
DT P + T PS + + SS G +T A G T L+F + +T
Sbjct: 520 DTTLLPASTTTSGPSQESTT-SHSSSGSTDT-------ALSPGSTTALSFGQEST----- 566
Query: 115 LMSFVYNLSDTH--LFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHD 172
+F N TH LFP+++ T I + + T+VH + +
Sbjct: 567 --TFHSNPGSTHTTLFPDST-----TSSGIVE------------ASTRVHSSTGSPR--- 604
Query: 173 ATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKS 216
T+ S S +GE+ Q P+ T P+PPS + +PV +S
Sbjct: 605 TTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEES 648
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 35.4 bits (80), Expect = 0.097
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 189 TRCEQDRPSPTTAPPAPPSPSPSPVPKSPS 218
T ++ P P APP PP+PSP P P + S
Sbjct: 612 TSLTRELPPPPPAPPPPPAPSPPPAPATSS 641
Score = 30.0 bits (66), Expect = 4.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSP 217
P P PP PP SP P+P P
Sbjct: 424 PPPPLCPPPPPPVSPPPLPSPP 445
Score = 29.3 bits (64), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 195 RPSPTTAPPAPPSPSPSPVP 214
RP TT+PP P P+P P P
Sbjct: 564 RPPITTSPPVPQEPAPVPSP 583
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 35.0 bits (79), Expect = 0.13
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 148 DIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPS 207
++ +++ GTQ N TL + T A S S E Q +P T P+PP+
Sbjct: 397 EVLQEWEAEQGTQAS-NGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPPA 455
Query: 208 PSPSPVPKSP 217
PS +P P +P
Sbjct: 456 PSSTPTPTAP 465
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 35.0 bits (79), Expect = 0.13
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 148 DIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPS 207
++ +++ GTQ N TL + T A S S E Q +P T P+PP+
Sbjct: 339 EVLQEWEAEQGTQAS-NGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPPA 397
Query: 208 PSPSPVPKSP 217
PS +P P +P
Sbjct: 398 PSSTPTPTAP 407
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 35.0 bits (79), Expect = 0.13
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 186 RGETRCEQDRPSPTTAPPAPPSPSPSPVPKSP 217
RG + Q PSP P PSP P PVP P
Sbjct: 1070 RGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRP 1101
Score = 30.8 bits (68), Expect = 2.4
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 195 RPSPTTAPPAP--PSPSPSPVP 214
RP+PT APP P P P P P+P
Sbjct: 898 RPNPTPAPPPPCFPVPPPQPLP 919
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.13
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 179 LSNSSFSRGETRCEQDRPS----PTTAPPAPPSPSPSPVPKSPSV 219
L N+S + G R RP+ P PP PP P P P+P S +
Sbjct: 152 LGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPI 196
Score = 30.4 bits (67), Expect = 3.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSPS 218
P P PP PP P P+P P P+
Sbjct: 218 PVPCAPPPPPPPPPPTPPPLPPA 240
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 34.3 bits (77), Expect = 0.22
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 179 LSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGTN 228
+SNS S R +D+P + P + P+P PS +P++P N +GT+
Sbjct: 401 ISNSDLSGSARRKGKDQPE-SRRPGSLPAPPPSQLPRNPGEQASNTNGTH 449
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 34.3 bits (77), Expect = 0.22
Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 197 SPTTAP---PAPPSPSPSPVPKSPS 218
SP+ AP P PPSPSP P P SPS
Sbjct: 1197 SPSPAPAMSPVPPSPSPVPTPASPS 1221
Score = 30.0 bits (66), Expect = 4.1
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 196 PSPTTAPPAPPSPSPSPVPKS 216
P PTT+PP PP +P PVP S
Sbjct: 922 PPPTTSPPEPPYSTP-PVPSS 941
Score = 28.9 bits (63), Expect = 9.0
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 167 TVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPS 218
++T +D+ + +S + G+ P+P PA P P P P P + S
Sbjct: 1623 SLTSYDSEVATLTQGASAAPGDPH-PPGPPAPAAPAPAAPQPGPDPPPGTDS 1673
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 33.5 bits (75), Expect = 0.37
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 55 DTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQ 114
DT P + T PS + + SS G +T A G T L+F + +T +
Sbjct: 192 DTTLLPASTTTSGPSQESTT-SHSSPGSTDT-------ALSPGSTTALSFGQESTTFHSS 243
Query: 115 LMSFVYNLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDAT 174
S + T LFP+++ T I + + T+VH + + T
Sbjct: 244 PGS-----THTTLFPDST-----TSSGIVE------------ASTRVHSSTGSPR---TT 278
Query: 175 IQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKS 216
+ S S +GE+ Q P+ T P+PPS + +PV +S
Sbjct: 279 LSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEES 320
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 33.5 bits (75), Expect = 0.37
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 181 NSSFSRGE-TRCEQDRPSPTTAPPAPPSPSPSPVPKSPS 218
+SS S GE RC P ++PPAPP P P P P SP+
Sbjct: 165 HSSISEGEGDRCGFAEPPGGSSPPAPPLP-PPPKPGSPT 202
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 33.5 bits (75), Expect = 0.37
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 55 DTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQ 114
DT P + T PS + + SS G +T A G T L+F + +T +
Sbjct: 86 DTTLLPASTTTSGPSQESTT-SHSSPGSTDT-------ALSPGSTTALSFGQESTTFHSS 137
Query: 115 LMSFVYNLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDAT 174
S + T LFP+++ T I + + T+VH + + T
Sbjct: 138 PGS-----THTTLFPDST-----TSSGIVE------------ASTRVHSSTGSPR---TT 172
Query: 175 IQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKS 216
+ S S +GE+ Q P+ T P+PPS + +PV +S
Sbjct: 173 LSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEES 214
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 33.5 bits (75), Expect = 0.37
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGT 227
P T APPAPP+P PSP P P+V + T
Sbjct: 2654 PPVTPAPPAPPAPPPSP-PPPPAVQHTGLLST 2684
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 33.5 bits (75), Expect = 0.37
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGT 227
P T APPAPP+P PSP P P+V + T
Sbjct: 2671 PPVTPAPPAPPAPPPSP-PPPPAVQHTGLLST 2701
>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
Length = 1596
Score = 33.5 bits (75), Expect = 0.37
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSP 217
P P PP PP P P P+PK+P
Sbjct: 1527 PPPLPPPPPPPLPPPPPLPKTP 1548
>gi|125625357 Sp2 transcription factor [Homo sapiens]
Length = 613
Score = 33.5 bits (75), Expect = 0.37
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 202 PPAPPSPS--------PSPVPKSPSVDKYNVSGTNGTCLLASMGLQLNLTY 244
PPAPP P+ P+P+P SP + + + + G +L G QL+ +Y
Sbjct: 56 PPAPPQPTPRKLVPIKPAPLPLSPGKNSFGILSSKGN-ILQIQGSQLSASY 105
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 33.5 bits (75), Expect = 0.37
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 195 RPSPTTAPPAPPSP-SPSPVPKSP 217
R P APPAPPSP SP P P++P
Sbjct: 6 RRPPPLAPPAPPSPASPDPEPRTP 29
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 33.1 bits (74), Expect = 0.48
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSPS 218
P P APPAP P P+P P +P+
Sbjct: 93 PPPQAAPPAPQPPQPAPQPPAPT 115
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 33.1 bits (74), Expect = 0.48
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 196 PSPTTAPPAPPSPSPSPVPKSPS 218
P P APPAP P P+P P +P+
Sbjct: 93 PPPQAAPPAPQPPQPAPQPPAPT 115
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 33.1 bits (74), Expect = 0.48
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 184 FSRGETRCEQDRPS-PTTAPPAPPSPSPSPVPKSPSVDKYN-----VSGTNGTCLLASMG 237
+SR E+D PS P P P SPSP P + PS + +G+ C LAS+
Sbjct: 44 WSRPPVSRERDDPSAPRPVPALPSSPSPPPPVRRPSAAREQQGRQVPAGSLRDCRLASLP 103
Query: 238 LQ 239
LQ
Sbjct: 104 LQ 105
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,625,240
Number of Sequences: 37866
Number of extensions: 739147
Number of successful extensions: 14437
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 11500
Number of HSP's gapped (non-prelim): 2644
length of query: 417
length of database: 18,247,518
effective HSP length: 105
effective length of query: 312
effective length of database: 14,271,588
effective search space: 4452735456
effective search space used: 4452735456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.