LAMP1 956

Name: LAMP1	Sequence: fasta or formatted (417aa)		NCBI GI: 112380628
Description: lysosomal-associated membrane protein 1		Referenced in: Lysosomes and Related Organelles
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.9 37 2 C cysteine 2.2 9 1 D aspartate 3.6 15 1 E glutamate 3.4 14 2 F phenylalanine 4.3 18 2 G glycine 6.7 28 2 H histidine 2.2 9 1 I isoleucine 3.8 16 1 K lysine 4.3 18 2 L leucine 11.0 46 10 M methionine 2.6 11 1 N asparagine 6.7 28 2 P proline 5.0 21 2 Q glutamine 2.9 12 1 R arginine 4.6 19 2 S serine 10.1 42 3 T threonine 7.9 33 2 V valine 7.2 30 2 W tryptophan 0.2 1 1 Y tyrosine 2.4 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lysosomal-associated membrane protein 1 LAMP2 0.302 lysosomal-associated membrane protein 2 isoform B pre... LAMP2 0.293 lysosomal-associated membrane protein 2 isoform A pre... LAMP2 0.286 lysosomal-associated membrane protein 2 isoform C p... CD68 0.089 CD68 antigen isoform B CD68 0.089 CD68 antigen isoform A LAMP3 0.087 lysosomal-associated membrane protein 3 C20orf103 0.019 chromosome 20 open reading frame 103 precursor SCAF1 0.014 SR-related CTD-associated factor 1 MUC12 0.012 PREDICTED: mucin 12 LOC645529 0.012 PREDICTED: similar to Putative acrosin-like proteas... MUC12 0.012 PREDICTED: mucin 12, cell surface associated MLL4 0.012 myeloid/lymphoid or mixed-lineage leukemia 4 RCOR3 0.012 REST corepressor 3 isoform a RCOR3 0.012 REST corepressor 3 isoform d PTPN23 0.012 protein tyrosine phosphatase, non-receptor type 23 [... WIPF3 0.012 WAS/WASL interacting protein family, member 3 [Homo... CUX1 0.011 cut-like homeobox 1 isoform a SHANK1 0.011 SH3 and multiple ankyrin repeat domains 1 LOC100130716 0.010 PREDICTED: similar to mucin 11 LOC100292378 0.010 PREDICTED: hypothetical protein LOC100130716 0.010 PREDICTED: similar to Mucin-12 BPTF 0.010 bromodomain PHD finger transcription factor isoform ... BPTF 0.010 bromodomain PHD finger transcription factor isoform ... SETBP1 0.010 SET binding protein 1 isoform a SP2 0.010 Sp2 transcription factor UTF1 0.010 undifferentiated embryonic cell transcription factor... HOXA3 0.010 homeobox A3 isoform a HOXA3 0.010 homeobox A3 isoform a LOC646396 0.010 PREDICTED: similar to hCG2042704 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.