Guide to the Human Genome
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Name: LOC643669 Sequence: fasta or formatted (307aa) NCBI GI: 169213941
Description:

PREDICTED: similar to mCG2980

Not currently referenced in the text

Other entries for this name:
alt mRNA {307aa} PREDICTED: similar to mCG2980 isoform 1
alt mRNA {307aa} PREDICTED: similar to mCG2980 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         24           2
 C cysteine            2.0          6           1
 D aspartate           3.6         11           1
 E glutamate          18.6         57           5
 F phenylalanine       1.0          3           1
 G glycine            10.4         32           3
 H histidine           4.6         14           7
 I isoleucine          0.3          1           1
 K lysine              5.5         17           2
 L leucine            10.4         32           4
 M methionine          1.3          4           1
 N asparagine          0.3          1           1
 P proline             5.2         16           2
 Q glutamine           6.2         19           1
 R arginine            8.8         27           2
 S serine              3.9         12           2
 T threonine           4.6         14           2
 V valine              4.6         14           2
 W tryptophan          1.0          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to mCG2980 
LOC643669             1.000   PREDICTED: similar to mCG2980 isoform 1 
LOC643669             1.000   PREDICTED: similar to mCG2980 isoform 1 
LOC283685             0.058   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC645202             0.058   PREDICTED: hypothetical protein LOC645202 
LOC100133758          0.057   PREDICTED: hypothetical protein, partial 
LOC283685             0.057   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC651807             0.057   PREDICTED: hypothetical protein 
LOC440243             0.053   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283767             0.052   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.052   golgi autoantigen, golgin subfamily a-like 
TCHH                  0.050   trichohyalin 
LOC400352             0.050   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.050   PREDICTED: similar to Putative golgin subfamily A m...
RPGR                  0.045   retinitis pigmentosa GTPase regulator isoform C [Hom...
NEFM                  0.043   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.043   neurofilament, medium polypeptide 150kDa isoform 2 ...
LOC100133599          0.042   PREDICTED: hypothetical protein 
ACIN1                 0.042   apoptotic chromatin condensation inducer 1 
LOC100288837          0.042   PREDICTED: hypothetical protein XP_002343931, parti...
CCDC11                0.040   coiled-coil domain containing 11 
BAT2D1                0.038   HBxAg transactivated protein 2 
LOC100130174          0.038   PREDICTED: hypothetical protein 
LOC100130174          0.038   PREDICTED: hypothetical protein 
LOC100130174          0.038   PREDICTED: hypothetical protein 
USP35                 0.038   ubiquitin specific protease 35 
DCTN1                 0.037   dynactin 1 isoform 4 
DCTN1                 0.037   dynactin 1 isoform 3 
DCTN1                 0.037   dynactin 1 isoform 2 
DCTN1                 0.037   dynactin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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