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Search of human proteins with 169213300
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169213300 PREDICTED: hypothetical protein [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169213300 PREDICTED: hypothetical protein [Homo sapiens] 402 e-112
gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo sap... 399 e-111
gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo sap... 399 e-111
gi|169214343 PREDICTED: hypothetical protein [Homo sapiens] 399 e-111
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 50 1e-06
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 44 9e-05
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 43 2e-04
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 42 3e-04
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 42 3e-04
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 40 0.001
gi|188219762 denticleless homolog [Homo sapiens] 40 0.001
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 40 0.002
gi|239744491 PREDICTED: hypothetical protein XP_002343164 [Homo ... 39 0.004
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 39 0.004
gi|50083281 KIAA1853 protein [Homo sapiens] 39 0.004
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 37 0.011
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 37 0.011
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 36 0.019
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 35 0.032
gi|239752939 PREDICTED: hypothetical protein [Homo sapiens] 35 0.042
gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo ... 35 0.042
gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo ... 35 0.042
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 35 0.042
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 35 0.054
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 35 0.054
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 35 0.054
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 34 0.071
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 34 0.071
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 34 0.071
gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo ... 34 0.093
>gi|169213300 PREDICTED: hypothetical protein [Homo sapiens]
Length = 198
Score = 402 bits (1032), Expect = e-112
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR 60
MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR
Sbjct: 1 MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR 60
Query: 61 SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS 120
SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS
Sbjct: 61 SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS 120
Query: 121 ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDS 180
ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDS
Sbjct: 121 ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDS 180
Query: 181 RARVSSATGVSCSSSSDL 198
RARVSSATGVSCSSSSDL
Sbjct: 181 RARVSSATGVSCSSSSDL 198
>gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 198
Score = 399 bits (1024), Expect = e-111
Identities = 197/198 (99%), Positives = 197/198 (99%)
Query: 1 MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR 60
MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR
Sbjct: 1 MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR 60
Query: 61 SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS 120
SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS
Sbjct: 61 SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS 120
Query: 121 ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDS 180
ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRP TSSMSAPSRACAACSSLDS
Sbjct: 121 ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPRTSSMSAPSRACAACSSLDS 180
Query: 181 RARVSSATGVSCSSSSDL 198
RARVSSATGVSCSSSSDL
Sbjct: 181 RARVSSATGVSCSSSSDL 198
>gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 198
Score = 399 bits (1024), Expect = e-111
Identities = 197/198 (99%), Positives = 197/198 (99%)
Query: 1 MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR 60
MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR
Sbjct: 1 MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR 60
Query: 61 SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS 120
SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS
Sbjct: 61 SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS 120
Query: 121 ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDS 180
ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRP TSSMSAPSRACAACSSLDS
Sbjct: 121 ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPRTSSMSAPSRACAACSSLDS 180
Query: 181 RARVSSATGVSCSSSSDL 198
RARVSSATGVSCSSSSDL
Sbjct: 181 RARVSSATGVSCSSSSDL 198
>gi|169214343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 198
Score = 399 bits (1024), Expect = e-111
Identities = 197/198 (99%), Positives = 197/198 (99%)
Query: 1 MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR 60
MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR
Sbjct: 1 MSSTRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSR 60
Query: 61 SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS 120
SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS
Sbjct: 61 SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSS 120
Query: 121 ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDS 180
ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRP TSSMSAPSRACAACSSLDS
Sbjct: 121 ASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPRTSSMSAPSRACAACSSLDS 180
Query: 181 RARVSSATGVSCSSSSDL 198
RARVSSATGVSCSSSSDL
Sbjct: 181 RARVSSATGVSCSSSSDL 198
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 50.4 bits (119), Expect = 1e-06
Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 13/188 (6%)
Query: 6 GSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAW 65
G ++ +R ++ + +R W+ S + R + S R S R P + R+RSR+P
Sbjct: 523 GRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGR-SHSRSPATRGRSRSRTPARR 581
Query: 66 ARSCSGWPAREPTVA-------ARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCR 118
RS S PAR + + +R+R + RG RSR R RS +R+P RR R
Sbjct: 582 GRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSR-TRSPV----RRRSR 636
Query: 119 SSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSL 178
S + R RS R ARR RS S + R RR S P+R + S
Sbjct: 637 SRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRT 696
Query: 179 DSRARVSS 186
R R S
Sbjct: 697 PRRGRSRS 704
Score = 46.2 bits (108), Expect = 2e-05
Identities = 59/183 (32%), Positives = 83/183 (45%), Gaps = 20/183 (10%)
Query: 28 SSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQ---------AWARSCSGWPAREPT 78
S + AR + + RRSR R P R+RSR+P RS S PAR +
Sbjct: 586 SRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARR-S 644
Query: 79 VAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASR-RSRLRSLRRWEARR 137
+R+R + RG RSR R + SR PA + R R+ A R RSR R+ RR R
Sbjct: 645 GRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRR---GR 701
Query: 138 TRSSSVLWPSMA-CTSPRYCTRRPHTSSMSAPSRACAACSSLDS-----RARVSSATGVS 191
+RS S++ + +P+ R +S SR S +S ++R+SS S
Sbjct: 702 SRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRS 761
Query: 192 CSS 194
SS
Sbjct: 762 LSS 764
Score = 44.3 bits (103), Expect = 7e-05
Identities = 51/162 (31%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 33 RTSATCSFTSSRRSRVRLP-ISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGP 91
R+ + S S RRSR R P ++ R+RSR+P RS S P P R+R +R P
Sbjct: 1910 RSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTP---PVTRRRSR---SRTP 1963
Query: 92 RRSRMALRPRSAP-----SRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWP 146
+R R R++P SR+ RR RS S +R RS R+R+S V
Sbjct: 1964 PVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRS-------RSRTSPVTRR 2016
Query: 147 SMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSAT 188
+P RR + + P + + S L R R S T
Sbjct: 2017 RSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 2058
Score = 42.7 bits (99), Expect = 2e-04
Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 21/204 (10%)
Query: 4 TRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSR--RSRVRLPI-SSIRARSR 60
+R + + RR+ S RR + S + AR + S T +R RSR R P S R+RSR
Sbjct: 625 SRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSR 684
Query: 61 SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMAL---RPRSAPSRAPAWYTARRFC 117
+P RS S P R +R+R RG SR R S+ R T++R
Sbjct: 685 TPARRGRSRSRTPRRG---RSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRS 741
Query: 118 RSSAS---RRSRLRSLRRWEARRTRSSS----VLWPSMACTSPRYCTRRPHTSSMSAPSR 170
RS++S ++SR+ S R RS + L S++ +SP C P S + P R
Sbjct: 742 RSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSP--C---PKQKSQTPPRR 796
Query: 171 ACAACSSLDSRARVSSATGVSCSS 194
+ + S +++R S SS
Sbjct: 797 SRSGSSQPKAKSRTPPRRSRSSSS 820
Score = 42.4 bits (98), Expect = 3e-04
Identities = 59/167 (35%), Positives = 72/167 (43%), Gaps = 24/167 (14%)
Query: 39 SFTSSRRSRVRL---PISSIRARSR-SPQAWARSCS-GWPA-------REPTVA-----A 81
S TSSRR R R P S R+RSR SP W RS S PA R P ++ +
Sbjct: 1831 SRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRS 1890
Query: 82 RTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSS 141
RT P S R R R RS R+ A +RR RS +R RS R R RS
Sbjct: 1891 RTSPVSRRRSRSRTSVTRRRS---RSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSR 1947
Query: 142 SVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSAT 188
S P T R +R P + + SR + + SR+R S T
Sbjct: 1948 SRTPP---VTRRRSRSRTPPVTRRRSRSRT-SPITRRRSRSRTSPVT 1990
Score = 41.2 bits (95), Expect = 6e-04
Identities = 44/110 (40%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 39 SFTSSRRSRVRLPISSIRARSRSPQ--AWARSCSGWPAREPTVAAR----TRPCSTRGPR 92
S ++ R R R P R RSRSPQ W+RS + A R +R +TRG
Sbjct: 516 SRSAQRWGRSRSP--QRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRS 573
Query: 93 RSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSS 142
RSR R + SR P ARR RS R R RS R ARR RS S
Sbjct: 574 RSRTPARRGRSRSRTP----ARRRSRSRTPTRRRSRS--RTPARRGRSRS 617
Score = 40.0 bits (92), Expect = 0.001
Identities = 56/164 (34%), Positives = 70/164 (42%), Gaps = 20/164 (12%)
Query: 33 RTSATCSFTSSRRSRVRLP-ISSIRARSR-SPQAWARSCSGWPAREPTVAARTRPCSTRG 90
R+ + S + RRSR R P IS R+RSR SP + RS S +R P S R
Sbjct: 1863 RSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRR 1922
Query: 91 PRRSRMALRPRSAPSRAPAWYTARRFCRSS----ASRRSRLRS--LRRWEARRTRSSSVL 144
R + R + SR P T RR RS RRSR R+ + R +R S
Sbjct: 1923 SRSRTPPVTRRRSRSRTP---TTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITR 1979
Query: 145 WPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSAT 188
S + TSP TRR S S +R SR+R S T
Sbjct: 1980 RRSRSRTSP--VTRRRSRSRTSPVTRR-------RSRSRTSPVT 2014
Score = 37.7 bits (86), Expect = 0.006
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 43 SRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRS 102
S R P S R+ R+ + +S S P+R +R+ + RG RSR +
Sbjct: 449 SHREISSSPTSKNRSHGRAKRD--KSHSHTPSRRMG-RSRSPATAKRGRSRSRTPTKRGH 505
Query: 103 APSRAPAW---YTARRFCRS-SASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTR 158
+ SR+P W +A+R+ RS S RR R RS +R R+R++ S + R +R
Sbjct: 506 SRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSR 565
Query: 159 RPHTSSMS---APSRACAACSSLDSRARVSSAT 188
P T S P+R + S +R R S T
Sbjct: 566 SPATRGRSRSRTPARRGRSRSRTPARRRSRSRT 598
Score = 36.6 bits (83), Expect = 0.014
Identities = 57/169 (33%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 44 RRSRVRL-PISSIRARSR-SPQAWARSCSGW-PAREPTVAARTRPCSTRGPR-------- 92
RRSR R PI+ R+RSR SP RS S P +RT P + R R
Sbjct: 1968 RRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIR 2027
Query: 93 ---RSRMALRPRSAPSRAPAWYTARRFCRSSASRRSR-LRSLRRWE---ARRTRSSSVLW 145
RSR L PR SR+ + RR RS R +R RSL R RR+ S S
Sbjct: 2028 RRSRSRTPLLPRKR-SRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSD 2086
Query: 146 PSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCSS 194
S + T P R H+ S + P ++ S SR +S C S
Sbjct: 2087 RSRSATPP---ATRNHSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRS 2132
Score = 33.9 bits (76), Expect = 0.093
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 52 ISSIRARSRSPQAWARSCSGWPAREPTVAART---RPCSTRGPRRSRMALRPRSAPSRA- 107
I+S +A +S RSC + +P + +RT CS P R + + PR +PSR+
Sbjct: 855 ITSPQANEQSVTPQRRSCFE-SSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSS 913
Query: 108 ------PAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPH 161
A + R+ S +S S R R RR+RS S + PRY H
Sbjct: 914 SPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPRY----SH 969
Query: 162 TSSMSAPSR 170
+ S S ++
Sbjct: 970 SGSSSPDTK 978
Score = 32.3 bits (72), Expect = 0.27
Identities = 49/185 (26%), Positives = 66/185 (35%), Gaps = 28/185 (15%)
Query: 29 SSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCST 88
SS R SA+ T + R R P R RS R + T R R S+
Sbjct: 1741 SSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRE------KTRTTRRRDRSGSS 1794
Query: 89 RGPRRSRMALRPRSAP-----------SRAPAWYTA------RRFCRSSASRRSRLRSLR 131
+ R R R RS SR+PA + RR RS SR RS
Sbjct: 1795 QSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS 1854
Query: 132 R-----WEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSS 186
R W+ R+R+S +P RR + + R + +S+ R S
Sbjct: 1855 RTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSR 1914
Query: 187 ATGVS 191
A+ VS
Sbjct: 1915 ASPVS 1919
Score = 32.3 bits (72), Expect = 0.27
Identities = 42/136 (30%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 13 RAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCS-- 70
R K RR + SS S + SR +R R S +RS + Q +R+ S
Sbjct: 1778 RREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRR 1837
Query: 71 --GWPAREPTVAARTRPCSTRGP-RRSRMALRP---RSAPSRAPAWYTARRFCRSSASRR 124
G PT R+R ++ P +RSR P R + SR P R R+S R
Sbjct: 1838 RRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSR 1897
Query: 125 SRLRSLRRWEARRTRS 140
R RS RR+RS
Sbjct: 1898 RRSRSRTSVTRRRSRS 1913
Score = 31.2 bits (69), Expect = 0.60
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 36/166 (21%)
Query: 42 SSRRSRVRLPISSIRARSRSPQAWARSCSGW-----------PAREPTVAARTRPCSTRG 90
SSRRSR +SS R++++S + RS SG P R + +++ + S
Sbjct: 755 SSRRSR---SLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTP 811
Query: 91 PRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMAC 150
PRRSR + S+P T R SS+S +++S R S+
Sbjct: 812 PRRSRSS----SSPPPKQKSKTPSRQSHSSSSPHPKVKS-----GTPPRQGSI------- 855
Query: 151 TSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCSSSS 196
TSP + + S++ R+C SS D + + + SCS SS
Sbjct: 856 TSP-----QANEQSVTPQRRSCFE-SSPDPELKSRTPSRHSCSGSS 895
Score = 30.4 bits (67), Expect = 1.0
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 30 SLARTSATCSFTSSRRSR---VRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPC 86
S + SA+ S TS RSR + +++ RS SP + R P EP + RP
Sbjct: 263 STSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPS 322
Query: 87 S----TRGP----------RRSRMALRPRSAPSRA 107
S T+ P ++ + A RP +P R+
Sbjct: 323 SPETATKQPSSPYEDKDKDKKEKSATRPSPSPERS 357
Score = 29.6 bits (65), Expect = 1.8
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
Query: 29 SSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCST 88
SS + T SRRSR SS RSR+P RS P+V++ +
Sbjct: 1690 SSRSSPELTRKARLSRRSRSAS--SSPETRSRTPPRHRRS--------PSVSSPEPAEKS 1739
Query: 89 RGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSS 141
R RR R A PR+ T+RR S R RS R +TR++
Sbjct: 1740 RSSRRRRSASSPRTKT-------TSRRGRSPSPKPRGLQRSRSRSRREKTRTT 1785
Score = 28.1 bits (61), Expect = 5.1
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 25/148 (16%)
Query: 61 SPQAWARSCSGWPAREPTVAA---RTRPCST---RGPRRSRMALRPRSAPSRAPAWYTAR 114
+P+A + S S + P A R+R S+ RGP + S+P P TAR
Sbjct: 1611 APRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSS-STESSPEHPPKSRTAR 1669
Query: 115 RFCRSSASRRSRLRSLRRWE--------------ARRTRSSSVLWPSMACTSPRYCTRRP 160
R RSS +++ R+ R +RR+RS+S + + T PR+ RR
Sbjct: 1670 RGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRH--RR- 1726
Query: 161 HTSSMSAPSRACAACSSLDSRARVSSAT 188
+ S+S+P A + SS R+ S T
Sbjct: 1727 -SPSVSSPEPAEKSRSSRRRRSASSPRT 1753
Score = 28.1 bits (61), Expect = 5.1
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 56 RARSRSPQAWARSCSGWP--AREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTA 113
+ +SR+P RS P R+ ++ R+R S+ RSR R R +PS + +
Sbjct: 1679 KTKSRTPPR-RRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVS----SP 1733
Query: 114 RRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACA 173
+S +SRR R S R + R S R +RR T + R+ +
Sbjct: 1734 EPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGS 1793
Query: 174 ACSSLDSRARVSSATGVS 191
+ S+ R R S + V+
Sbjct: 1794 SQSTSRRRQRSRSRSRVT 1811
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 43.9 bits (102), Expect = 9e-05
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 10/174 (5%)
Query: 26 ACSSSLARTSATCSFTSSRRSRVRLPISSIRARS----RSPQAWARSCSGWPAREPTVAA 81
+CS +RTS+TCS +SR S S R S +S + SC+ +R +
Sbjct: 132 SCSCQSSRTSSTCSCQTSRTSSTSCSYQSSRTSSTCSCQSSGTSSTSCNWQSSR----TS 187
Query: 82 RTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSS 141
T C + G + + + S S + ++ S + + S S ++ T S+
Sbjct: 188 STCSCQSSGTSSTSYSCQS-SGTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGTSST 246
Query: 142 SVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCSSS 195
S W S +S C + TSS S ++ S+ ++ +S+T SC SS
Sbjct: 247 SCSWQSSRTSSTCSC-QSSRTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSS 299
Score = 39.3 bits (90), Expect = 0.002
Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 20/185 (10%)
Query: 26 ACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP 85
+CS +RTS+TC SSR S S R S S + S + + + + T
Sbjct: 97 SCSWQFSRTSSTCRCQSSRTSSTSCSCQSSRTSSTSCSCQSSRTSSTCSCQTSRTSST-S 155
Query: 86 CSTRGPRRSRMALRPRSAPSRAPA-WYTARR----FCRSSAS-------RRSRLRSLRRW 133
CS + R S S S W ++R C+SS + + S S
Sbjct: 156 CSYQSSRTSSTCSCQSSGTSSTSCNWQSSRTSSTCSCQSSGTSSTSYSCQSSGTSSTCSC 215
Query: 134 EARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSA---PSRACAACSSLDSRARVSSATGV 190
++ T S+S S +S C + TSS S SR + CS SR +S+T
Sbjct: 216 QSSGTSSTSCSCQSSGTSSTCSC-QSSGTSSTSCSWQSSRTSSTCSCQSSR---TSSTSC 271
Query: 191 SCSSS 195
SC SS
Sbjct: 272 SCQSS 276
Score = 39.3 bits (90), Expect = 0.002
Identities = 55/199 (27%), Positives = 82/199 (41%), Gaps = 10/199 (5%)
Query: 2 SSTRGSNQLLRRAWKASA--CRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARS 59
SST S Q R + S R +CS +RTS+TCS SS S S R S
Sbjct: 129 SSTSCSCQSSRTSSTCSCQTSRTSSTSCSYQSSRTSSTCSCQSSGTSSTSCNWQSSRTSS 188
Query: 60 R-SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCR 118
S Q+ S + + + ++ T C + G + + + S S + ++
Sbjct: 189 TCSCQSSGTSSTSYSCQSSGTSS-TCSCQSSGTSSTSCSCQS-SGTSSTCSCQSSGTSST 246
Query: 119 SSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYC--TRRPHTSSMSAPSRACAACS 176
S + + SR S ++ RT S+S S +S C + TS SR + CS
Sbjct: 247 SCSWQSSRTSSTCSCQSSRTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSSTCS 306
Query: 177 SLDSRARVSSATGVSCSSS 195
SR +S+T SC SS
Sbjct: 307 CQFSR---TSSTSCSCQSS 322
Score = 34.3 bits (77), Expect = 0.071
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 7/175 (4%)
Query: 26 ACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP 85
+CS ++TS+TCS SS+ S SS + + +R S + ++ +
Sbjct: 17 SCSCQSSQTSSTCSCQSSQTSSTCSCQSSGTSSTSCNWQSSRISSTCSCQSSGTSSTSCS 76
Query: 86 CSTRGPRRSRMALRPRSAPSRAPAWYTAR--RFCRSSASRRSRLRSLRRWEARRTRSSSV 143
C + S + + S + +W +R CR +SR S ++ RT S+S
Sbjct: 77 CQS-SETSSTCSCQSSGTSSTSCSWQFSRTSSTCRCQSSRTSSTSC--SCQSSRTSSTSC 133
Query: 144 LWPSMACTSPRYC--TRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCSSSS 196
S +S C +R TS SR + CS S +S S +SS
Sbjct: 134 SCQSSRTSSTCSCQTSRTSSTSCSYQSSRTSSTCSCQSSGTSSTSCNWQSSRTSS 188
Score = 32.7 bits (73), Expect = 0.21
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 1/152 (0%)
Query: 26 ACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP 85
+CS + TS+TCS SS S S R S +R+ S + + + + T
Sbjct: 224 SCSCQSSGTSSTCSCQSSGTSSTSCSWQSSRTSSTCSCQSSRTSSTSCSCQSSGTSSTCS 283
Query: 86 CSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLW 145
C + G + + + S + +R S + + SR S ++ T S+S +
Sbjct: 284 CQSSGTSSTSCSCQSSRTSSTCSCQF-SRTSSTSCSCQSSRTSSTCSCQSSGTSSTSCIC 342
Query: 146 PSMACTSPRYCTRRPHTSSMSAPSRACAACSS 177
S +S R TSS S R+ S+
Sbjct: 343 WSSGTSSTSCSGRFSGTSSTSCNCRSSGTSST 374
Score = 27.3 bits (59), Expect = 8.7
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 2 SSTRGSNQLLRRAWKAS--ACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARS 59
SST S Q R + S + R +CS + TS+TCS SS S S R S
Sbjct: 244 SSTSCSWQSSRTSSTCSCQSSRTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSS 303
Query: 60 RSPQAWARSCSGWPAREPTVAARTRPCSTRG 90
++R+ S + + + + T C + G
Sbjct: 304 TCSCQFSRTSSTSCSCQSSRTSSTCSCQSSG 334
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 43.1 bits (100), Expect = 2e-04
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 10/174 (5%)
Query: 26 ACSSSLARTSATCSFTSSRRSRVRLPISSIRARS----RSPQAWARSCSGWPAREPTVAA 81
+CS +RTS+TCS +SR S S R S +S + SC+ +R +
Sbjct: 132 SCSCQSSRTSSTCSCQTSRTSSTSCSYQSSRTSSTCSCQSSGTSSTSCNWQSSR----TS 187
Query: 82 RTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSS 141
T C + G + + + S S + ++ S + + S S ++ T S+
Sbjct: 188 STCSCQSSGTSSTSYSCQS-SGTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGTSST 246
Query: 142 SVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCSSS 195
S W S +S C + TSS S ++ S+ ++ +S+T SC SS
Sbjct: 247 SCSWQSSRTSSTCSC-QSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSS 299
Score = 38.9 bits (89), Expect = 0.003
Identities = 43/170 (25%), Positives = 63/170 (37%), Gaps = 36/170 (21%)
Query: 26 ACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP 85
+CS +RTS+TC SSR S S R S S
Sbjct: 97 SCSWQFSRTSSTCCCQSSRTSSTSCSCQSSRTSSTS------------------------ 132
Query: 86 CSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLW 145
CS + R S + T+R S + + SR S ++ T S+S W
Sbjct: 133 CSCQSSRTSSTC-----------SCQTSRTSSTSCSYQSSRTSSTCSCQSSGTSSTSCNW 181
Query: 146 PSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCSSS 195
S +S C + TSS S ++ S+ ++ +S+T SC SS
Sbjct: 182 QSSRTSSTCSC-QSSGTSSTSYSCQSSGTSSTCSCQSSGTSSTSCSCQSS 230
Score = 36.6 bits (83), Expect = 0.014
Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 10/199 (5%)
Query: 2 SSTRGSNQLLRRAWKASA--CRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARS 59
SST S Q R + S R +CS +RTS+TCS SS S S R S
Sbjct: 129 SSTSCSCQSSRTSSTCSCQTSRTSSTSCSYQSSRTSSTCSCQSSGTSSTSCNWQSSRTSS 188
Query: 60 R-SPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCR 118
S Q+ S + + + ++ T C + G + + + S S + ++
Sbjct: 189 TCSCQSSGTSSTSYSCQSSGTSS-TCSCQSSGTSSTSCSCQS-SGTSSTCSCQSSGTSST 246
Query: 119 SSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYC--TRRPHTSSMSAPSRACAACS 176
S + + SR S ++ T S+S S +S C + TS SR + CS
Sbjct: 247 SCSWQSSRTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSSTCS 306
Query: 177 SLDSRARVSSATGVSCSSS 195
SR +S+T SC SS
Sbjct: 307 CQFSR---TSSTSCSCQSS 322
Score = 33.5 bits (75), Expect = 0.12
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 26/173 (15%)
Query: 26 ACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP 85
+CS ++TS+TCS SS+ +S +S + SC+ +R + T
Sbjct: 17 SCSCQSSQTSSTCSCQSSQ--------TSSTCSCQSSGTSSTSCNWQSSR----TSSTCS 64
Query: 86 CSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLW 145
C + G + + + S C+SS + + W+ RT S+
Sbjct: 65 CQSSGTSSTSCSCQSSETSSTCS--------CQSSGTSSTSC----SWQFSRTSSTCCCQ 112
Query: 146 PSMACTSPRYC--TRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCSSSS 196
S ++ C +R TS SR + CS SR +S + S +SS
Sbjct: 113 SSRTSSTSCSCQSSRTSSTSCSCQSSRTSSTCSCQTSRTSSTSCSYQSSRTSS 165
Score = 27.7 bits (60), Expect = 6.7
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 26 ACSSSLARTSATCSFTSSRRSRVRLPISSIRARS----RSPQAWARSCSGW 72
+CS +RTS+TCS SR S S R S +S + SC W
Sbjct: 293 SCSCQSSRTSSTCSCQFSRTSSTSCSCQSSRTSSTCSCQSSGTSSTSCICW 343
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 42.4 bits (98), Expect = 3e-04
Identities = 38/102 (37%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 44 RRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSA 103
+RS R ++RARSR+P +RS + R R R S RRSR R
Sbjct: 1907 KRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRT 1966
Query: 104 PSRAPAWYTARRFCRSSASRRSRLRSLR-RWEARRTRSSSVL 144
PSR + R + SRRSR S R R +RR RS SV+
Sbjct: 1967 PSRRSRTPSRR---SRTPSRRSRTPSRRSRTPSRRRRSRSVV 2005
Score = 38.1 bits (87), Expect = 0.005
Identities = 47/121 (38%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 33 RTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPARE---PTVAARTRPCSTR 89
+T S T SRRSR P S R RSRS RS S P+R P+ +RT +R
Sbjct: 1916 KTVRARSRTPSRRSRSHTP--SRRRRSRSVGR-RRSFSISPSRRSRTPSRRSRTPSRRSR 1972
Query: 90 GP-RRSRMALRPRSAPSRAPAWYTARRFCRSSASRRS------RLRSLRRWEARRTRSSS 142
P RRSR R PSR + RR RS RRS RLR R RR S
Sbjct: 1973 TPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSP 2032
Query: 143 V 143
+
Sbjct: 2033 I 2033
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/143 (30%), Positives = 60/143 (41%), Gaps = 11/143 (7%)
Query: 28 SSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCS 87
S + R+S + S S RSR R +RSRS RS S +E +
Sbjct: 1845 SRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVS----KEKRKRSPKHRSK 1900
Query: 88 TRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPS 147
+R +R R + R RA + +RR + SRR R RS+ R R S + PS
Sbjct: 1901 SRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGR------RRSFSISPS 1954
Query: 148 MACTSPRYCTRRPHTSSMSAPSR 170
+P +R P S + PSR
Sbjct: 1955 RRSRTPSRRSRTPSRRSRT-PSR 1976
Score = 29.6 bits (65), Expect = 1.8
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 21/113 (18%)
Query: 30 SLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTR 89
S R+ + S +S +SR R S RAR RS ++ S R
Sbjct: 1820 SSLRSRSKRSKSSEHKSRKRTSESRSRARKRS---------------------SKSKSHR 1858
Query: 90 GPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSS 142
RSR R R SR+ + RR +RS + E +R RSSS
Sbjct: 1859 SQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSS 1911
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 42.4 bits (98), Expect = 3e-04
Identities = 38/102 (37%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 44 RRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSA 103
+RS R ++RARSR+P +RS + R R R S RRSR R
Sbjct: 1907 KRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRT 1966
Query: 104 PSRAPAWYTARRFCRSSASRRSRLRSLR-RWEARRTRSSSVL 144
PSR + R + SRRSR S R R +RR RS SV+
Sbjct: 1967 PSRRSRTPSRR---SRTPSRRSRTPSRRSRTPSRRRRSRSVV 2005
Score = 38.1 bits (87), Expect = 0.005
Identities = 47/121 (38%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 33 RTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPARE---PTVAARTRPCSTR 89
+T S T SRRSR P S R RSRS RS S P+R P+ +RT +R
Sbjct: 1916 KTVRARSRTPSRRSRSHTP--SRRRRSRSVGR-RRSFSISPSRRSRTPSRRSRTPSRRSR 1972
Query: 90 GP-RRSRMALRPRSAPSRAPAWYTARRFCRSSASRRS------RLRSLRRWEARRTRSSS 142
P RRSR R PSR + RR RS RRS RLR R RR S
Sbjct: 1973 TPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSP 2032
Query: 143 V 143
+
Sbjct: 2033 I 2033
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/143 (30%), Positives = 60/143 (41%), Gaps = 11/143 (7%)
Query: 28 SSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCS 87
S + R+S + S S RSR R +RSRS RS S +E +
Sbjct: 1845 SRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVS----KEKRKRSPKHRSK 1900
Query: 88 TRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPS 147
+R +R R + R RA + +RR + SRR R RS+ R R S + PS
Sbjct: 1901 SRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGR------RRSFSISPS 1954
Query: 148 MACTSPRYCTRRPHTSSMSAPSR 170
+P +R P S + PSR
Sbjct: 1955 RRSRTPSRRSRTPSRRSRT-PSR 1976
Score = 29.6 bits (65), Expect = 1.8
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 21/113 (18%)
Query: 30 SLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTR 89
S R+ + S +S +SR R S RAR RS ++ S R
Sbjct: 1820 SSLRSRSKRSKSSEHKSRKRTSESRSRARKRS---------------------SKSKSHR 1858
Query: 90 GPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSS 142
RSR R R SR+ + RR +RS + E +R RSSS
Sbjct: 1859 SQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSS 1911
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 40.4 bits (93), Expect = 0.001
Identities = 49/155 (31%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 32 ARTSATCSFTSSRRSRVRLPISSIRARSRSPQA--------WARSCSGWPAREPTVAART 83
AR ++ S +SS SR SS R+ SRS + ARS S +R + + R
Sbjct: 373 ARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRY 432
Query: 84 RPCSTRGPRRSRMALRPRSAPSRAPA---WYTARRFCRSSASRRSRL----RSLRRWEAR 136
+RG R S R SR+PA Y RR RS + R R LR +
Sbjct: 433 SRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSS 492
Query: 137 RTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRA 171
R+RSS L PS + + R + P S + SR+
Sbjct: 493 RSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRS 527
Score = 28.9 bits (63), Expect = 3.0
Identities = 39/131 (29%), Positives = 50/131 (38%), Gaps = 14/131 (10%)
Query: 41 TSSRRSRVRLP-------ISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPRR 93
+S RSR R P I+ I + S + A + + A T P GP
Sbjct: 308 SSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAP 367
Query: 94 SRMA-LRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRW----EARRTRSSSVLWPSM 148
R A R RS+ S + + +A R S +S RS RS R R RS S W
Sbjct: 368 GRNASARRRSSSSSSSS--SASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRS 425
Query: 149 ACTSPRYCTRR 159
S RY R
Sbjct: 426 RSRSRRYSRSR 436
>gi|188219762 denticleless homolog [Homo sapiens]
Length = 730
Score = 40.0 bits (92), Expect = 0.001
Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 26/176 (14%)
Query: 25 WACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQ--AWARSCSG---WPAREPTV 79
WA + TSS+ + + P + + SP A A SC+G P+ PT
Sbjct: 408 WASQKKKESRPGLVTVTSSQSTPAKAPRAKCNPSNSSPSSAACAPSCAGDLPLPSNTPTF 467
Query: 80 AARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTR 139
+ +T P R P R ++ S + P+ S S+R W R
Sbjct: 468 SIKTSPAKARSPINRRGSV--SSVSPKPPS---------------SFKMSIRNWVTRTPS 510
Query: 140 SSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCSSS 195
SS + P + T + + R +S S ACS +SR RV SC S
Sbjct: 511 SSPPITPPASET--KIMSPRKALIPVSQKSSQAEACS--ESRNRVKRRLDSSCLES 562
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 39.7 bits (91), Expect = 0.002
Identities = 43/140 (30%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 3 STRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSP 62
S R S R + S+ R + S S +R+ + S +S RSR SS R RSRS
Sbjct: 198 SNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSR-----SSSRERSRSR 252
Query: 63 QAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSAS 122
+ +RS S + R+ S+ P R+R R RS SS+
Sbjct: 253 GSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRS----------------SSSG 296
Query: 123 RRSRLRSLRRWEARRTRSSS 142
R + R+ R RR RSSS
Sbjct: 297 DRKKRRTRSRSPERRHRSSS 316
Score = 28.9 bits (63), Expect = 3.0
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 92 RRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACT 151
RRSR + RS+ SR+ ++R SS+ RSR RS ++ SS S +
Sbjct: 200 RRSRS--KSRSSHSRS----SSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRG 253
Query: 152 SPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCS 193
S + R H S S R+ ++ SS R R S + S S
Sbjct: 254 SKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSS 295
>gi|239744491 PREDICTED: hypothetical protein XP_002343164 [Homo
sapiens]
Length = 471
Score = 38.5 bits (88), Expect = 0.004
Identities = 53/187 (28%), Positives = 75/187 (40%), Gaps = 43/187 (22%)
Query: 1 MSSTRGSNQLLRRA-WKASA-------CRRICWACSSSLARTS---ATCSFTSSRRSRVR 49
++ R S+ LLR + W AS+ R CW SS + S A+ SF S + +
Sbjct: 246 LAMLRSSSALLRSSPWPASSRSSSTRLSRSNCWNSKSSKSFVSVSRASASFNDSDKGVIE 305
Query: 50 LPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRG--------PRRSRMALRPR 101
L + R S + + E ++ + R +T G P R R LRP
Sbjct: 306 LRLELGVERLAGLPVLLHSSLRFSSSERSILSHRRWVATPGSSLLRPEAPARPREGLRPA 365
Query: 102 SA------------PSRAPA---WYTARRF------CRSSAS---RRSRLRSLRRWEARR 137
SA P+ P Y+A RF RSS S RSR RRW +RR
Sbjct: 366 SANAAVASPMLGSSPASGPPSARLYSAHRFRMVSRRWRSSLSISCSRSRSWRCRRWYSRR 425
Query: 138 TRSSSVL 144
+ S S++
Sbjct: 426 SSSLSLI 432
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 38.5 bits (88), Expect = 0.004
Identities = 39/117 (33%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 56 RARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARR 115
R+ SRS A SG AR +R++ S R +SR RS R+ + R
Sbjct: 15 RSASRSGSAHG---SGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRS 71
Query: 116 FCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRAC 172
RS + RRSR RS R + RR S S SP TRR H + + P C
Sbjct: 72 RSRSRSHRRSRSRSYSR-DYRRRHSHS--------HSP-MSTRRRHVGNRANPDPNC 118
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 38.5 bits (88), Expect = 0.004
Identities = 54/186 (29%), Positives = 71/186 (38%), Gaps = 18/186 (9%)
Query: 27 CSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPC 86
CS S + S S SSR R S +SRS + RS S P+ R+ P
Sbjct: 389 CSRSSSYASTRSSSHSSRSPNPRA--SPRYTQSRSTSSEKRSYSRSPSYSSKSGKRSPPS 446
Query: 87 STRGPRRSRMALRPRSAPSRAPAW----------YTARRFCRSSASRRSRLR------SL 130
+ RRS R + R P + ARR RS + R R R
Sbjct: 447 RSSRSRRSPSYSRYSPSRERDPKYSEKDSQQRERERARRRRRSYSPMRKRRRDSPSHLEA 506
Query: 131 RRWEARRTRSSSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGV 190
RR + R R PS + + T ++SS S + + S SR+R S T
Sbjct: 507 RRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSRSRRRSRTRT 566
Query: 191 SCSSSS 196
S SSSS
Sbjct: 567 SSSSSS 572
Score = 36.2 bits (82), Expect = 0.019
Identities = 49/147 (33%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 42 SSRRSRVRLPISSIRARSRSPQAWAR--SCSGWPAREPTVAARTRPCSTRGPRRSRMALR 99
S +R R R + R RS SP R S S AR T +AR RP P S
Sbjct: 475 SQQRERER---ARRRRRSYSPMRKRRRDSPSHLEARRIT-SARKRPIPYYRPSPSSSG-- 528
Query: 100 PRSAPSRAPAWYTA---RRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYC 156
+ S +WY++ R RS + RSR RS RR R + SSS PS S R
Sbjct: 529 ---SLSSTSSWYSSSSSRSASRSYSRSRSRSRSRRRSRTRTSSSSSSRSPSPGSRS-RSR 584
Query: 157 TRRPHTSSMSAPSRACAACSSLDSRAR 183
+R S + SR+ ++ S S R
Sbjct: 585 SRSRSRSRSRSQSRSYSSADSYSSTRR 611
Score = 32.3 bits (72), Expect = 0.27
Identities = 55/195 (28%), Positives = 80/195 (41%), Gaps = 35/195 (17%)
Query: 33 RTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPR 92
R + + S +S +RS R P S ++ RSP S S R P+ + R P R P+
Sbjct: 415 RYTQSRSTSSEKRSYSRSPSYSSKSGKRSPP----SRSSRSRRSPSYS-RYSPSRERDPK 469
Query: 93 ----------RSRMALRPRS-APSR-----APAWYTARR----------FCRSSASRRSR 126
R R R RS +P R +P+ ARR + R S S
Sbjct: 470 YSEKDSQQRERERARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSSSGS 529
Query: 127 LRSLRRW-EARRTRSSSVLWP---SMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRA 182
L S W + +RS+S + S + + R TR +SS +PS + S SR+
Sbjct: 530 LSSTSSWYSSSSSRSASRSYSRSRSRSRSRRRSRTRTSSSSSSRSPSPGSRSRSRSRSRS 589
Query: 183 RVSSATGVSCSSSSD 197
R S + SS+D
Sbjct: 590 RSRSRSQSRSYSSAD 604
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 37.0 bits (84), Expect = 0.011
Identities = 45/132 (34%), Positives = 56/132 (42%), Gaps = 14/132 (10%)
Query: 30 SLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVA-ARTRPCST 88
S AR S FTS+ R P R+R A S + P R P+ A + +T
Sbjct: 121 SPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTSSAT 180
Query: 89 RGP---RRSRMALRPR-------SAPSRAPAWYTARRFCRSSASRR-SRLRSLRRWEARR 137
R P R SR AL+PR APSR+ + T R ASRR R L R R
Sbjct: 181 RVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRLLSRTRQRE 240
Query: 138 TRSSSVLWPSMA 149
S+ PS+A
Sbjct: 241 LGGSAA--PSVA 250
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 37.0 bits (84), Expect = 0.011
Identities = 45/132 (34%), Positives = 56/132 (42%), Gaps = 14/132 (10%)
Query: 30 SLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVA-ARTRPCST 88
S AR S FTS+ R P R+R A S + P R P+ A + +T
Sbjct: 121 SPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTSSAT 180
Query: 89 RGP---RRSRMALRPR-------SAPSRAPAWYTARRFCRSSASRR-SRLRSLRRWEARR 137
R P R SR AL+PR APSR+ + T R ASRR R L R R
Sbjct: 181 RVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRLLSRTRQRE 240
Query: 138 TRSSSVLWPSMA 149
S+ PS+A
Sbjct: 241 LGGSAA--PSVA 250
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 36.2 bits (82), Expect = 0.019
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 3 STRGSNQLLRRAWKASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSP 62
S R S R + S+ R + S S +R+ + S +S RSR SS R RSRS
Sbjct: 198 SNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSR-----SSSRERSRSR 252
Query: 63 QAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPS 105
+ +RS S + R+ S+ P R+R R RS+ S
Sbjct: 253 GSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSS 295
Score = 30.0 bits (66), Expect = 1.3
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 28/134 (20%)
Query: 16 KASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAR 75
K + RR SS +R+S+ S SS RSR R +RSRS + ++S S +R
Sbjct: 195 KKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSR-------SRSRSSSS-SQSRSRSSSR 246
Query: 76 EPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSAS-----RRSRLRSL 130
E +R+R +R RS R S+P + R + SS+S +RSR RS
Sbjct: 247 E---RSRSRGSKSRSSSRSH---RGSSSPRK-------RSYSSSSSSPERNRKRSRSRSS 293
Query: 131 RRWE--ARRTRSSS 142
+ RRTRS S
Sbjct: 294 SSGDRKKRRTRSRS 307
Score = 28.9 bits (63), Expect = 3.0
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 92 RRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACT 151
RRSR + RS+ SR+ ++R SS+ RSR RS ++ SS S +
Sbjct: 200 RRSRS--KSRSSHSRS----SSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRG 253
Query: 152 SPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCS 193
S + R H S S R+ ++ SS R R S + S S
Sbjct: 254 SKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSS 295
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 35.4 bits (80), Expect = 0.032
Identities = 42/117 (35%), Positives = 53/117 (45%), Gaps = 24/117 (20%)
Query: 33 RTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPR 92
R S S +SR R SS R+ SRS ++ SG +R +R+R CS R
Sbjct: 732 RNSGPSRSRSRSKSRGR---SSSRSNSRSSKS-----SGSYSR-----SRSRSCS-RSYS 777
Query: 93 RSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMA 149
RSR R RS SR+ RS + RSR +S RR+RS S PS A
Sbjct: 778 RSRSRSRSRSRSSRS----------RSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSA 824
Score = 27.3 bits (59), Expect = 8.7
Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 28 SSSLART-SATCSFTSSR-RSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP 85
S S +R+ S +CS + SR RSR R S R+RSRS Q+ +RS S P R R+R
Sbjct: 761 SGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRS-QSRSRSKSYSPGRR----RRSRS 815
Query: 86 CSTRGPRRSRMALRPRSAP 104
S P S L SAP
Sbjct: 816 RSPTPP--SSAGLGSNSAP 832
>gi|239752939 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 35.0 bits (79), Expect = 0.042
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92 RRSRMALRPRSAPSRAPA-WYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMAC 150
RR LR + A + + + W A R+S++ RS S R R+R+S L S+A
Sbjct: 178 RRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSS--SARACSLSRSRASR-LPASVAR 234
Query: 151 TSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVS 191
+SP RR S+ S AC CS+ S A S ATG +
Sbjct: 235 SSPSRRQRRS-----SSCSSACCRCSNASSVACFSGATGAA 270
Score = 30.8 bits (68), Expect = 0.79
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 16 KASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAR 75
+A++C R A SS AR CS + SR S RLP S R+ Q + SCS R
Sbjct: 199 RAASCLRASSASRSSSARA---CSLSRSRAS--RLPASVARSSPSRRQRRSSSCSSACCR 253
Query: 76 EPTV--------AARTRPCSTRGPRR--SRMALRPRSAPS------RAPAWYTA 113
A P P R +R + RS PS R W TA
Sbjct: 254 CSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIRVSCWATA 307
>gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo
sapiens]
Length = 310
Score = 35.0 bits (79), Expect = 0.042
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92 RRSRMALRPRSAPSRAPA-WYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMAC 150
RR LR + A + + + W A R+S++ RS S R R+R+S L S+A
Sbjct: 178 RRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSS--SARACSLSRSRASR-LPASVAR 234
Query: 151 TSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVS 191
+SP RR S+ S AC CS+ S A S ATG +
Sbjct: 235 SSPSRRQRRS-----SSCSSACCRCSNASSVACFSGATGAA 270
Score = 30.8 bits (68), Expect = 0.79
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 16 KASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAR 75
+A++C R A SS AR CS + SR S RLP S R+ Q + SCS R
Sbjct: 199 RAASCLRASSASRSSSARA---CSLSRSRAS--RLPASVARSSPSRRQRRSSSCSSACCR 253
Query: 76 EPTV--------AARTRPCSTRGPRR--SRMALRPRSAPS------RAPAWYTA 113
A P P R +R + RS PS R W TA
Sbjct: 254 CSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIRVSCWATA 307
>gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo
sapiens]
Length = 310
Score = 35.0 bits (79), Expect = 0.042
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92 RRSRMALRPRSAPSRAPA-WYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMAC 150
RR LR + A + + + W A R+S++ RS S R R+R+S L S+A
Sbjct: 178 RRGSTGLRAQGASAGSGSVWPRAASCLRASSASRSS--SARACSLSRSRASR-LPASVAR 234
Query: 151 TSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVS 191
+SP RR S+ S AC CS+ S A S ATG +
Sbjct: 235 SSPSRRQRRS-----SSCSSACCRCSNASSVACFSGATGAA 270
Score = 30.8 bits (68), Expect = 0.79
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 16 KASACRRICWACSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAR 75
+A++C R A SS AR CS + SR S RLP S R+ Q + SCS R
Sbjct: 199 RAASCLRASSASRSSSARA---CSLSRSRAS--RLPASVARSSPSRRQRRSSSCSSACCR 253
Query: 76 EPTV--------AARTRPCSTRGPRR--SRMALRPRSAPS------RAPAWYTA 113
A P P R +R + RS PS R W TA
Sbjct: 254 CSNASSVACFSGATGAAPALPASPSRELARHSFSRRSGPSGNRASIRVSCWATA 307
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.0 bits (79), Expect = 0.042
Identities = 50/160 (31%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 45 RSRVRLPISSIRARSRSPQAW-------ARSCSGWPAREPTVAARTRPCSTRGPRRSRMA 97
RSR R S R RSRSP +RS S P R P+ R P PRR M
Sbjct: 277 RSRSRSKSRS-RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRR--MP 333
Query: 98 LRPRSAPSRAPAWYTARRFC----RSSASRRSRLRSLRRWEARRT----RSSSVLWPSMA 149
PR SR+P R SS+S SR RS + +RT R + L PS +
Sbjct: 334 PPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSAS 393
Query: 150 CTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATG 189
R+ P T S+ ++RVS + G
Sbjct: 394 PPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPG 433
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 34.7 bits (78), Expect = 0.054
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Query: 42 SSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPR 101
+ RR R R R+ S +P + +G P R+ + R R + S +P
Sbjct: 488 TQRRERYRQ-----RSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQP- 541
Query: 102 SAPSRAPAWYTARRFCR---------SSASRRSRLRSLRRWEARRTRSSSVLWPSMACTS 152
+ P+ A W + + R SSA RRSR RS R RR+RS+ +
Sbjct: 542 APPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSR 601
Query: 153 PRYCTRRPHTSSMSAPSRACAACS 176
R RR S+ P+ + ++ S
Sbjct: 602 SREKRRRRRRSASPPPATSSSSSS 625
Score = 27.3 bits (59), Expect = 8.7
Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 31/106 (29%)
Query: 56 RARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARR 115
R+R R P + A S + +R +R+R STR RRSR R
Sbjct: 556 RSRDRKPGSHASSSARRRSR-----SRSRSRSTR--RRSRSTDR---------------- 592
Query: 116 FCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRRPH 161
R SRRSR R RR RR RS+S P A +S R H
Sbjct: 593 --RRGGSRRSRSREKRR---RRRRSAS---PPPATSSSSSSRRERH 630
>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
Length = 951
Score = 34.7 bits (78), Expect = 0.054
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 56 RARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMALRPRSAPSRAP------- 108
R RSRSP+ + S S +R + A + P + R RRSR R + +P
Sbjct: 766 RTRSRSPKYHSSSKSR--SRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREER 823
Query: 109 AWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRYCTRR--PHTSSMS 166
+ TA R RS + R R RS E ++ R S S A + +++ P ++ +
Sbjct: 824 SVPTAYRVSRSPGASRKRTRSRSPHEKKKKRRSRSRTKSKARSQSVSPSKQAAPRPAAPA 883
Query: 167 APSRACAACSSLDSR 181
A S A+ S ++SR
Sbjct: 884 AHSAHSASVSPVESR 898
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 34.7 bits (78), Expect = 0.054
Identities = 38/112 (33%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 42 SSRRSRVRLPISSIRARSRSPQAWARSCS-GWPAREPTVAARTRPCSTRGPRRSRMALRP 100
S RSR R SS R+RS ++RS S GW +R T R+R S R + R + R
Sbjct: 1335 SHSRSRSRSSTSSYRSRS-----YSRSRSRGWYSRGRT---RSRSSSYRSYKSHRTSSRS 1386
Query: 101 RSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTS 152
RS S +R + S RSR RS + R S S +C S
Sbjct: 1387 RSRSSSYDPHSRSRSYTYDSYYSRSRSRSRSQRSDSYHRGRSYNRRSRSCRS 1438
Score = 27.7 bits (60), Expect = 6.7
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 81 ARTRPCSTRGPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRS 140
+R +R P RSR +S Y+ R S++ R RS +RS
Sbjct: 1304 SRDDDSQSRSPSRSRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSY-------SRS 1356
Query: 141 SSVLWPSMACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARVSSATGVSCSSSS 196
S W S T R + R + S ++ SR+ + SS D +R S T S S S
Sbjct: 1357 RSRGWYSRGRTRSRSSSYRSYKSHRTS-SRSRSRSSSYDPHSRSRSYTYDSYYSRS 1411
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 34.3 bits (77), Expect = 0.071
Identities = 51/169 (30%), Positives = 67/169 (39%), Gaps = 21/169 (12%)
Query: 45 RSRVRLPISSIRARSRSPQAWARSCSGWPARE-PTVA-----ARTRPCSTRGPRRSRMAL 98
RSR+ L S++R R+ P R C+ P P A AR P S GP R A
Sbjct: 214 RSRITLVASALRRRASGPGPVIRGCTAQPGPAFPHRATHLDPARLSPESAPGPARRGRAS 273
Query: 99 RP---RSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLWPSMACTSPRY 155
P R AP ARR S+ R R ARR R S+ P A
Sbjct: 274 VPGPARRGCDSAPG--PARRGRDSAPVSAPRGRDSAPGSARRGRDSA---PGPALRVRTA 328
Query: 156 CTRRPHTSSMSAP-----SRACAACSSLDSRARVSSAT--GVSCSSSSD 197
+ H S+ + P SR+ S+L SR +S + SC + S+
Sbjct: 329 RSDAGHRSTSTTPGTGLRSRSTQQRSALLSRRSLSGSADENPSCGTGSE 377
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 34.3 bits (77), Expect = 0.071
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Query: 31 LARTSATCSFTSSRRSRVRLPISSIRARSRS-PQAWARSCSGWPAREPTVAARTRPCSTR 89
+ R + + S ++ RR R R S R+RSRS + R R +R R +
Sbjct: 1 MGRDTRSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRERRSDSE 60
Query: 90 GPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLW-PSM 148
R R +R RS P P W++ SS S +S +W RR R+ S W PS
Sbjct: 61 EERWQRSGMRSRSPP--RPKWHSRD---GSSQSDSGEEQSRGQWARRRRRARS--WSPSS 113
Query: 149 ACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARV 184
+ +S R + S A + A + SL R R+
Sbjct: 114 SASSSASPGR---SQSPRAAAAALSQQQSLQERLRL 146
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 34.3 bits (77), Expect = 0.071
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Query: 31 LARTSATCSFTSSRRSRVRLPISSIRARSRS-PQAWARSCSGWPAREPTVAARTRPCSTR 89
+ R + + S ++ RR R R S R+RSRS + R R +R R +
Sbjct: 1 MGRDTRSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRERRSDSE 60
Query: 90 GPRRSRMALRPRSAPSRAPAWYTARRFCRSSASRRSRLRSLRRWEARRTRSSSVLW-PSM 148
R R +R RS P P W++ SS S +S +W RR R+ S W PS
Sbjct: 61 EERWQRSGMRSRSPP--RPKWHSRD---GSSQSDSGEEQSRGQWARRRRRARS--WSPSS 113
Query: 149 ACTSPRYCTRRPHTSSMSAPSRACAACSSLDSRARV 184
+ +S R + S A + A + SL R R+
Sbjct: 114 SASSSASPGR---SQSPRAAAAALSQQQSLQERLRL 146
>gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo
sapiens]
Length = 570
Score = 33.9 bits (76), Expect = 0.093
Identities = 46/151 (30%), Positives = 57/151 (37%), Gaps = 18/151 (11%)
Query: 39 SFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCSTRGPRRSRMAL 98
+F S S LP R P+A R CSGW A E AR P R R+ L
Sbjct: 68 AFGPSPASSDWLPARWRNGRGGRPRA--RLCSGWTAAE---EARRNPTLGGLLGRQRLLL 122
Query: 99 RPRSAPSRAPAWYTARRFCRSSASRRSRLR---SLRRWEARRTRSSSVLWPSMACTSPRY 155
R AP R S +S + RR E R R+SS P++ ++
Sbjct: 123 RMGGGRLGAPMERHGRASATSVSSAGEQAAGDPEGRRQEPLRRRASSASVPAVGASAEG- 181
Query: 156 CTRRPHTSSMSAPSRACAACSSLDSRARVSS 186
TRR S S P+ SR RV S
Sbjct: 182 -TRRDRLGSYSGPTSV--------SRQRVES 203
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.120 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,501,088
Number of Sequences: 37866
Number of extensions: 318208
Number of successful extensions: 2747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 2290
Number of HSP's gapped (non-prelim): 453
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.