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Search of human proteins with 169209908
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169209908 PREDICTED: hypothetical protein [Homo sapiens]
(66 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210223 PREDICTED: hypothetical protein [Homo sapiens] 145 9e-36
gi|169210432 PREDICTED: hypothetical protein [Homo sapiens] 145 9e-36
gi|169209908 PREDICTED: hypothetical protein [Homo sapiens] 145 9e-36
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 36 0.008
gi|8922477 polymerase (RNA) III (DNA directed) polypeptide E [Ho... 33 0.037
gi|239751037 PREDICTED: hypothetical protein [Homo sapiens] 32 0.083
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 31 0.19
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 31 0.19
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa... 31 0.19
gi|93141033 PAX interacting protein 1 [Homo sapiens] 31 0.24
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 30 0.32
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 30 0.32
gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens] 30 0.41
gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens] 30 0.41
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 30 0.41
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 30 0.41
gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 30 0.41
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 30 0.54
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 29 0.70
gi|217035154 RCSD domain containing 1 [Homo sapiens] 29 0.70
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 29 0.70
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens] 29 0.92
gi|239740950 PREDICTED: similar to mitogen-activated protein kin... 29 0.92
gi|4885433 mitogen-activated protein kinase 8 interacting protei... 29 0.92
gi|4885075 atonal homolog 1 [Homo sapiens] 29 0.92
gi|157266334 tubby like protein 1 [Homo sapiens] 29 0.92
gi|169214926 PREDICTED: similar to IQ motif and SEC7 domain-cont... 28 1.2
gi|239755335 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo ... 28 1.2
>gi|169210223 PREDICTED: hypothetical protein [Homo sapiens]
Length = 66
Score = 145 bits (365), Expect = 9e-36
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MLNRFGSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGT 60
MLNRFGSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGT
Sbjct: 1 MLNRFGSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGT 60
Query: 61 QNNPPG 66
QNNPPG
Sbjct: 61 QNNPPG 66
>gi|169210432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 66
Score = 145 bits (365), Expect = 9e-36
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MLNRFGSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGT 60
MLNRFGSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGT
Sbjct: 1 MLNRFGSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGT 60
Query: 61 QNNPPG 66
QNNPPG
Sbjct: 61 QNNPPG 66
>gi|169209908 PREDICTED: hypothetical protein [Homo sapiens]
Length = 66
Score = 145 bits (365), Expect = 9e-36
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MLNRFGSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGT 60
MLNRFGSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGT
Sbjct: 1 MLNRFGSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGT 60
Query: 61 QNNPPG 66
QNNPPG
Sbjct: 61 QNNPPG 66
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 35.8 bits (81), Expect = 0.008
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 20 EDRAPQEAPAQEGPPDK-----CPAQFHGGAGHQSSRGRQQG-----PEGTQNNPPG 66
E R PQE +GPP + P + G G QS +G QG P+G PPG
Sbjct: 826 EMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPG 882
>gi|8922477 polymerase (RNA) III (DNA directed) polypeptide E [Homo
sapiens]
Length = 708
Score = 33.5 bits (75), Expect = 0.037
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 11 EESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGTQNNPP 65
EE S EG ED +E A+E P D P+ H + GR G + +PP
Sbjct: 499 EEPVSEEGEED---EEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPP 550
>gi|239751037 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 0.083
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 15 SREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQ-SSRGRQQGPEGTQNNPPG 66
+R A R E P Q CPA+ AGH +S GRQ G G ++PPG
Sbjct: 37 ARACAPGRHSGEGPPQGNLSPSCPAE----AGHGCASTGRQVGVSGAGSSPPG 85
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 31.2 bits (69), Expect = 0.19
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 NRFGSEN-DEESPSREGAEDRAPQEAPAQEGPPDKCP 38
NR+G+ N D + + G+ +RAPQ+ P + PP P
Sbjct: 570 NRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQP 606
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 31.2 bits (69), Expect = 0.19
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 NRFGSEN-DEESPSREGAEDRAPQEAPAQEGPPDKCP 38
NR+G+ N D + + G+ +RAPQ+ P + PP P
Sbjct: 670 NRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQP 706
>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
sapiens]
Length = 331
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 3 NRFGSENDEESPSREGAE----------DRAPQEAPAQEGPPDK 36
+R +ENDEE P E DR P+E P +EG P K
Sbjct: 204 SREAAENDEEEPGEATGEAVREDRVTLADRGPKERPRREGKPRK 247
>gi|93141033 PAX interacting protein 1 [Homo sapiens]
Length = 1069
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 8 ENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGTQNNP 64
EN+E+ EG+ D A +QEG P QF + + S+G + + ++P
Sbjct: 202 ENEEQDSQNEGSTDEKSSPASSQEGSPSG-DQQFSPKSNTEKSKGELMFDDSSDSSP 257
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 11 EESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGA---GHQSSRGRQQGPEGTQNNPPG 66
+E P R R P P+ GP + PA + GGA H GR+Q PE P G
Sbjct: 394 QEEPKR-----RPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRG 447
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 11 EESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGA---GHQSSRGRQQGPEGTQNNPPG 66
+E P R R P P+ GP + PA + GGA H GR+Q PE P G
Sbjct: 394 QEEPKR-----RPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRG 447
>gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens]
Length = 345
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 7 SENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSR 51
+ + +++P+ +G R P + P + P P Q GGAG SSR
Sbjct: 7 ASSGQQAPAGQGQGQRPPPQPPQAQAPQPPPPPQL-GGAGGGSSR 50
>gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens]
Length = 346
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 7 SENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSR 51
+ + +++P+ +G R P + P + P P Q GGAG SSR
Sbjct: 7 ASSGQQAPAGQGQGQRPPPQPPQAQAPQPPPPPQL-GGAGGGSSR 50
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 6 GSENDEESPSREGAEDRAPQEA---PAQEGPPDKCPAQFHGGAGHQSSRGRQQGPE---G 59
G + + P +G PQ+ P +G P P Q G + RGR QGP G
Sbjct: 77 GGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQ---GGHPRPPRGRPQGPPQQGG 133
Query: 60 TQNNPP 65
Q PP
Sbjct: 134 HQQGPP 139
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 17 EGAEDRAPQEAPAQEG--------PPDKCPAQFHGGAGH-QSSRGRQQGP--EGTQNNPP 65
+G +D PQ+ P Q+G PP P GH +GR QGP +G PP
Sbjct: 62 DGNQDDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRPP 121
>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 6 GSENDEESPSREGAEDRAPQEA---PAQEGPPDKCPAQFHGGAGHQSSRGRQQGPE---G 59
G + + P +G PQ+ P +G P P Q G + RGR QGP G
Sbjct: 77 GGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQ---GGHPRPPRGRPQGPPQQGG 133
Query: 60 TQNNPP 65
Q PP
Sbjct: 134 HQQGPP 139
>gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 6 GSENDEESPSREGAEDRAPQEA---PAQEGPPDKCPAQFHGGAGHQSSRGRQQGPE---G 59
G + + P +G PQ+ P +G P P Q G + RGR QGP G
Sbjct: 77 GGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQ---GGHPRPPRGRPQGPPQQGG 133
Query: 60 TQNNPP 65
Q PP
Sbjct: 134 HQQGPP 139
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 24 PQEAPAQEGPPD-------KCPAQFHGGAGHQSSRGRQQGPEGTQNNP 64
PQ P GPP + P G AG Q SRG +GP G Q P
Sbjct: 1046 PQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRG-LKGPPGPQGRP 1092
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 6 GSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEG 59
G ++ E+P E E A +E P K A G +S RGR GPEG
Sbjct: 864 GDQDRAEAPKAESGEPGAREERPRPHRSHSKEAA---GPPEARSERGRGPGPEG 914
>gi|217035154 RCSD domain containing 1 [Homo sapiens]
Length = 416
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 8 ENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGTQNNP 64
+N+E P + E + +E A + P P GG + +G+++ EG P
Sbjct: 323 QNEEVGPEHDSQETKKLEEGAAVKETPHSPPGGVKGGDVPKQEKGKEKQQEGAVLEP 379
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 16 REGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGTQ 61
R+ AP APA+ GP K P +HG Q GR G Q
Sbjct: 464 RQALGPEAP--APAKPGPHAKEPRHYHGKTKGQGDEGRHLGSRHCQ 507
>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 11 EESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGTQNNP 64
+ +P A R ++PA+EGP GG GR QG G + +P
Sbjct: 140 DPAPLSRPAPPRPAHQSPAEEGPRGAA-----GGGPRTPPAGRTQGQSGPRESP 188
>gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 317
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/52 (32%), Positives = 20/52 (38%)
Query: 15 SREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGPEGTQNNPPG 66
SRE + AP+ PA P P + G G S G P N PG
Sbjct: 50 SRERDDPSAPRPVPALPSSPSPPPPRPFRGRGPHRSLGCDAAPAALGNGRPG 101
>gi|239740950 PREDICTED: similar to mitogen-activated protein
kinase 8 interacting protein 1 [Homo sapiens]
Length = 442
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 6 GSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGP 57
G+E+DEE E+RA + A GPP Q G S+G+ QGP
Sbjct: 15 GAEDDEEDDD----EERAARRPGA--GPPKAESGQEPASRGQGQSQGQSQGP 60
>gi|4885433 mitogen-activated protein kinase 8 interacting protein 1
[Homo sapiens]
Length = 711
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 6 GSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGRQQGP 57
G+E+DEE E+RA + A GPP Q G S+G+ QGP
Sbjct: 105 GAEDDEEDDD----EERAARRPGA--GPPKAESGQEPASRGQGQSQGQSQGP 150
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 33 PPDKCPAQFH---------GGAGHQSSRGRQQGPEGTQN-NPPG 66
PP C + H GGAG+ ++ G QQ G+Q PPG
Sbjct: 227 PPASCKSDHHHLRTAASYEGGAGNATAAGAQQASGGSQRPTPPG 270
>gi|157266334 tubby like protein 1 [Homo sapiens]
Length = 542
Score = 28.9 bits (63), Expect = 0.92
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 10 DEESPSREGAEDRAPQEAPAQEGP-----PDKCPAQFHGGAGHQSSRGRQQGPEGTQNNP 64
D E E ED +E A+E P K P + A + R + QGP G +P
Sbjct: 113 DAEDEEEEEEEDEEDEEEEAEEKKEKILLPPKKPLREKSSADLKERRAKAQGPRGDLGSP 172
>gi|169214926 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 15 SREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRG---RQQGPEGTQNN 63
++E +D+ + A A PD+ P Q HG Q RG R P+ Q +
Sbjct: 90 AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSRAHTPQSPQKH 141
>gi|239755335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 515
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 6 GSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGR----QQGPEG 59
GS+ +E+P+ + +AP A + P P+ F G S G + PEG
Sbjct: 172 GSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEG 229
>gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo
sapiens]
Length = 302
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 6 GSENDEESPSREGAEDRAPQEAPAQEGPPDKCPAQFHGGAGHQSSRGR----QQGPEG 59
GS+ +E+P+ + +AP A + P P+ F G S G + PEG
Sbjct: 172 GSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEG 229
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.304 0.128 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,142,585
Number of Sequences: 37866
Number of extensions: 227843
Number of successful extensions: 1181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 214
length of query: 66
length of database: 18,247,518
effective HSP length: 39
effective length of query: 27
effective length of database: 16,770,744
effective search space: 452810088
effective search space used: 452810088
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.