Guide to the Human Genome
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Name: LOC100292757 Sequence: fasta or formatted (515aa) NCBI GI: 239755335
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         51           3
 C cysteine            3.3         17           1
 D aspartate           3.9         20           1
 E glutamate           5.4         28           2
 F phenylalanine       1.7          9           1
 G glycine             9.1         47           2
 H histidine           4.5         23           2
 I isoleucine          1.0          5           1
 K lysine              1.7          9           2
 L leucine            10.9         56           3
 M methionine          1.6          8           1
 N asparagine          1.4          7           1
 P proline             9.7         50           3
 Q glutamine           7.2         37           2
 R arginine            5.6         29           2
 S serine              9.7         50           4
 T threonine           4.9         25           1
 V valine              7.8         40           3
 W tryptophan          0.4          2           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291505          0.579   PREDICTED: hypothetical protein XP_002347172 
LOC100288189          0.579   PREDICTED: hypothetical protein XP_002343065 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.015   myeloid/lymphoid or mixed-lineage leukemia 2 
SRCAP                 0.015   Snf2-related CBP activator protein 
RERE                  0.015   atrophin-1 like protein isoform b 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform a 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
SPEG                  0.011   SPEG complex locus 
DVL3                  0.011   dishevelled 3 
LOC100291818          0.010   PREDICTED: hypothetical protein XP_002345593 
LOC100290730          0.010   PREDICTED: hypothetical protein XP_002348317 
LOC100288133          0.010   PREDICTED: hypothetical protein XP_002342283 
HISPPD1               0.010   Histidine acid phosphatase domain containing 1 [Homo...
PHC2                  0.010   polyhomeotic-like 2 isoform a 
ZIC5                  0.010   zinc finger protein of the cerebellum 5 
LOC100293770          0.010   PREDICTED: hypothetical protein 
LOC100288201          0.010   PREDICTED: hypothetical protein 
ZNF358                0.010   zinc finger protein 358 
IER5                  0.009   immediate early response 5 
LOC100288201          0.009   PREDICTED: hypothetical protein XP_002343260 
PRDM2                 0.009   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.009   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.009   retinoblastoma protein-binding zinc finger protein i...
WIZ                   0.009   widely-interspaced zinc finger motifs 
EP400                 0.009   E1A binding protein p400 
TACC3                 0.009   transforming, acidic coiled-coil containing protein 3...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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