Guide to the Human Genome
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Name: LOC728744 Sequence: fasta or formatted (274aa) NCBI GI: 239741271
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         38           4
 C cysteine            2.9          8           2
 D aspartate           1.8          5           1
 E glutamate           1.5          4           1
 F phenylalanine       0.7          2           1
 G glycine             9.9         27           2
 H histidine           2.9          8           1
 I isoleucine          3.6         10           2
 K lysine              0.7          2           2
 L leucine             9.9         27           3
 M methionine          0.7          2           1
 N asparagine          1.8          5           2
 P proline            13.5         37           2
 Q glutamine           5.5         15           1
 R arginine           12.8         35           3
 S serine              5.5         15           1
 T threonine           5.8         16           1
 V valine              2.6          7           1
 W tryptophan          2.6          7           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729189             0.971   PREDICTED: hypothetical protein 
WNK2                  0.022   WNK lysine deficient protein kinase 2 
CCDC88B               0.020   coiled-coil domain containing 88 
SSPO                  0.020   SCO-spondin 
IGSF9B                0.018   immunoglobulin superfamily, member 9B 
LOC100131435          0.016   PREDICTED: hypothetical protein 
LOC100131435          0.014   PREDICTED: hypothetical protein 
LOC100131435          0.014   PREDICTED: hypothetical protein 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
LOC100293456          0.014   PREDICTED: hypothetical protein 
WDR81                 0.014   PREDICTED: WD repeat domain 81 
LOC100287108          0.014   PREDICTED: hypothetical protein 
LOC100287108          0.014   PREDICTED: hypothetical protein XP_002342658 
LOC100294499          0.014   PREDICTED: hypothetical protein 
LOC100294290          0.014   PREDICTED: hypothetical protein XP_002344064 
LOC100294201          0.014   PREDICTED: hypothetical protein 
LOC100294172          0.014   PREDICTED: hypothetical protein 
LOC100294122          0.014   PREDICTED: hypothetical protein 
SPRED3                0.014   sprouty-related, EVH1 domain containing 3 isoform a...
LOC643355             0.014   PREDICTED: hypothetical protein 
LOC727804             0.014   PREDICTED: hypothetical protein 
LOC643355             0.014   PREDICTED: hypothetical protein 
SPOCD1                0.014   SPOC domain containing 1 
LOC645321             0.013   PREDICTED: hypothetical protein 
FLJ46321              0.013   hypothetical protein LOC389763 
LOC100292287          0.013   PREDICTED: hypothetical protein 
LOC100289576          0.013   PREDICTED: hypothetical protein 
LOC100289576          0.013   PREDICTED: hypothetical protein XP_002343622 
LOC100293604          0.011   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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