Guide to the Human Genome
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Name: LOC643637 Sequence: fasta or formatted (527aa) NCBI GI: 169202863
Description:

PREDICTED: hypothetical protein

Referenced in:

Xenobiotic Pathways

Other entries for this name:
alt prot [527aa] PREDICTED: hypothetical protein
alt prot [333aa] PREDICTED: similar to hCG1729961 isoform 1
alt prot [302aa] PREDICTED: similar to hCG1729961 isoform 3
alt prot [279aa] PREDICTED: similar to hCG1729961 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         25           3
 C cysteine            1.5          8           1
 D aspartate           3.2         17           2
 E glutamate           6.3         33           2
 F phenylalanine       4.0         21           2
 G glycine             6.6         35           1
 H histidine           1.9         10           1
 I isoleucine          3.8         20           2
 K lysine              7.6         40           2
 L leucine            10.1         53           3
 M methionine          2.8         15           2
 N asparagine          3.8         20           2
 P proline             6.8         36           3
 Q glutamine           5.1         27           1
 R arginine            4.9         26           3
 S serine              9.7         51           3
 T threonine           4.6         24           1
 V valine              6.6         35           1
 W tryptophan          2.8         15           1
 Y tyrosine            3.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC643637             0.999   PREDICTED: hypothetical protein 
LOC100287520          0.457   PREDICTED: hypothetical protein XP_002343130 
LOC643637             0.448   PREDICTED: similar to hCG1729961 isoform 3 
LOC643637             0.415   PREDICTED: similar to hCG1729961 isoform 1 
LOC643637             0.389   PREDICTED: similar to hCG1729961 isoform 2 
GLYATL1               0.356   glycine-N-acyltransferase-like 1 
GLYATL2               0.204   glycine-N-acyltransferase-like 2 
GLYAT                 0.173   glycine-N-acyltransferase isoform a 
C6orf140              0.121   glycine N-acyltransferase-like protein 3 
GLYAT                 0.117   glycine-N-acyltransferase isoform b 
LOC100287413          0.036   PREDICTED: hypothetical protein XP_002343129 
TGIF1                 0.010   TG-interacting factor isoform a 
LOC100291828          0.009   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.009   PREDICTED: hypothetical protein XP_002343509 
ZNF843                0.009   zinc finger protein 843 
LOC642424             0.007   PREDICTED: similar to hCG1742442 
LOC642424             0.007   PREDICTED: similar to hCG1742442 
LOC642424             0.007   PREDICTED: similar to hCG1742442 
BLNK                  0.006   B-cell linker isoform 1 
CCDC17                0.006   coiled-coil domain containing 17 
DNAH1                 0.006   dynein, axonemal, heavy chain 1 
ZNF831                0.006   zinc finger protein 831 
CCDC27                0.006   coiled-coil domain containing 27 
LOC128322             0.005   PREDICTED: similar to nuclear transport factor 2 [H...
APC                   0.005   adenomatous polyposis coli 
APC                   0.005   adenomatous polyposis coli 
APC                   0.005   adenomatous polyposis coli 
SF1                   0.005   splicing factor 1 isoform 2 
SF1                   0.005   splicing factor 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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