Guide to the Human Genome
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Name: LOC643637 Sequence: fasta or formatted (279aa) NCBI GI: 239744371
Description:

PREDICTED: similar to hCG1729961 isoform 2

Referenced in:

Xenobiotic Pathways

Other entries for this name:
alt prot [527aa] PREDICTED: hypothetical protein
alt prot [527aa] PREDICTED: hypothetical protein
alt prot [333aa] PREDICTED: similar to hCG1729961 isoform 1
alt prot [302aa] PREDICTED: similar to hCG1729961 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         15           3
 C cysteine            2.2          6           1
 D aspartate           2.2          6           2
 E glutamate           6.8         19           2
 F phenylalanine       3.2          9           1
 G glycine             6.8         19           1
 H histidine           2.2          6           1
 I isoleucine          5.0         14           2
 K lysine              6.8         19           1
 L leucine            11.1         31           2
 M methionine          3.9         11           2
 N asparagine          6.8         19           2
 P proline             4.7         13           1
 Q glutamine           5.0         14           1
 R arginine            3.9         11           3
 S serine              7.9         22           1
 T threonine           2.5          7           1
 V valine              6.8         19           1
 W tryptophan          2.5          7           1
 Y tyrosine            4.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1729961 isoform 2 
LOC643637             0.971   PREDICTED: similar to hCG1729961 isoform 3 
LOC100287520          0.918   PREDICTED: hypothetical protein XP_002343130 
LOC643637             0.895   PREDICTED: similar to hCG1729961 isoform 1 
LOC643637             0.751   PREDICTED: hypothetical protein 
LOC643637             0.749   PREDICTED: hypothetical protein 
GLYATL1               0.735   glycine-N-acyltransferase-like 1 
GLYATL2               0.402   glycine-N-acyltransferase-like 2 
GLYAT                 0.293   glycine-N-acyltransferase isoform a 
C6orf140              0.220   glycine N-acyltransferase-like protein 3 
GLYAT                 0.145   glycine-N-acyltransferase isoform b 
NSUN5C                0.015   NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho...
KDM5B                 0.007   jumonji, AT rich interactive domain 1B 
RPGRIP1L              0.005   RPGRIP1-like isoform b 
RPGRIP1L              0.005   RPGRIP1-like isoform a 
CLEC2L                0.005   C-type lectin domain family 2, member L 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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