Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287520 Sequence: fasta or formatted (339aa) NCBI GI: 239744373
Description:

PREDICTED: hypothetical protein XP_002343130

Referenced in:

Xenobiotic Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         15           3
 C cysteine            2.4          8           1
 D aspartate           2.9         10           2
 E glutamate           6.8         23           2
 F phenylalanine       5.0         17           2
 G glycine             5.9         20           1
 H histidine           2.1          7           1
 I isoleucine          5.0         17           2
 K lysine              6.8         23           1
 L leucine            10.6         36           2
 M methionine          3.8         13           1
 N asparagine          6.5         22           2
 P proline             4.7         16           2
 Q glutamine           4.4         15           1
 R arginine            5.0         17           3
 S serine              8.3         28           1
 T threonine           2.9         10           1
 V valine              6.2         21           1
 W tryptophan          2.4          8           1
 Y tyrosine            3.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343130 
LOC643637             0.840   PREDICTED: similar to hCG1729961 isoform 3 
LOC643637             0.779   PREDICTED: similar to hCG1729961 isoform 1 
LOC643637             0.748   PREDICTED: similar to hCG1729961 isoform 2 
LOC643637             0.717   PREDICTED: hypothetical protein 
LOC643637             0.716   PREDICTED: hypothetical protein 
GLYATL1               0.676   glycine-N-acyltransferase-like 1 
GLYATL2               0.397   glycine-N-acyltransferase-like 2 
GLYAT                 0.316   glycine-N-acyltransferase isoform a 
C6orf140              0.224   glycine N-acyltransferase-like protein 3 
GLYAT                 0.194   glycine-N-acyltransferase isoform b 
STAT5A                0.007   signal transducer and activator of transcription 5A ...
STAT5B                0.006   signal transducer and activator of transcription 5B ...
IQGAP2                0.006   IQ motif containing GTPase activating protein 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press