Guide to the Human Genome
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Name: LOC100287413 Sequence: fasta or formatted (123aa) NCBI GI: 239744365
Description:

PREDICTED: hypothetical protein XP_002343129

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         11           2
 C cysteine            5.7          7           1
 D aspartate           1.6          2           1
 E glutamate           2.4          3           1
 F phenylalanine       0.0          0           0
 G glycine             7.3          9           1
 H histidine           2.4          3           1
 I isoleucine          3.3          4           1
 K lysine              3.3          4           2
 L leucine            10.6         13           1
 M methionine          1.6          2           1
 N asparagine          3.3          4           1
 P proline            10.6         13           2
 Q glutamine           4.1          5           1
 R arginine            7.3          9           1
 S serine             13.0         16           2
 T threonine           7.3          9           1
 V valine              3.3          4           2
 W tryptophan          2.4          3           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343129 
LOC643637             0.161   PREDICTED: hypothetical protein 
LOC643637             0.161   PREDICTED: hypothetical protein 
C6orf150              0.042   hypothetical protein LOC115004 
BAT2                  0.034   HLA-B associated transcript-2 
ARAP1                 0.025   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
CENPA                 0.025   centromere protein A isoform b 
CENPA                 0.025   centromere protein A isoform a 
ARAP1                 0.025   ArfGAP with RhoGAP domain, ankyrin repeat and PH do...
ARAP1                 0.025   ArfGAP with RhoGAP domain, ankyrin repeat and PH do...
TENC1                 0.025   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.025   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.025   tensin like C1 domain containing phosphatase isoform...
ANKRD11               0.025   ankyrin repeat domain 11 
SRRM2                 0.025   splicing coactivator subunit SRm300 
ABL2                  0.021   arg tyrosine kinase isoform c 
ABL2                  0.021   arg tyrosine kinase isoform b 
ABL2                  0.021   arg tyrosine kinase isoform d 
ABL2                  0.021   arg tyrosine kinase isoform a 
RIMBP3B               0.021   RIMS binding protein 3B 
RIMBP3C               0.021   RIMS binding protein 3C 
LOC100290263          0.021   PREDICTED: hypothetical protein XP_002347916 
RIMBP3                0.021   DKFZP434H0735 protein 
LOC100288336          0.017   PREDICTED: hypothetical protein XP_002343795 
ZC4H2                 0.017   zinc finger, C4H2 domain containing 
ZC3H18                0.017   zinc finger CCCH-type containing 18 
LOC728351             0.017   PREDICTED: hypothetical protein 
LOC100128074          0.017   PREDICTED: hypothetical protein 
AGAP3                 0.017   centaurin, gamma 3 isoform a 
SRRM1                 0.017   serine/arginine repetitive matrix 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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