Guide to the Human Genome
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Name: LOC642424 Sequence: fasta or formatted (242aa) NCBI GI: 169194776
Description:

PREDICTED: similar to hCG1742442

Not currently referenced in the text

Other entries for this name:
alt mRNA {242aa} PREDICTED: similar to hCG1742442
alt prot {296aa} PREDICTED: similar to hCG1742442
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         21           3
 C cysteine            2.1          5           1
 D aspartate           2.9          7           1
 E glutamate           0.8          2           1
 F phenylalanine       6.6         16           2
 G glycine             5.8         14           1
 H histidine           2.1          5           1
 I isoleucine          2.9          7           1
 K lysine              1.2          3           1
 L leucine            10.7         26           2
 M methionine          0.8          2           1
 N asparagine          1.2          3           2
 P proline            14.5         35           4
 Q glutamine           5.4         13           2
 R arginine            9.9         24           3
 S serine             10.3         25           2
 T threonine           7.0         17           1
 V valine              2.9          7           1
 W tryptophan          1.2          3           1
 Y tyrosine            2.9          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1742442 
LOC642424             1.000   PREDICTED: similar to hCG1742442 
LOC642424             0.996   PREDICTED: similar to hCG1742442 
LOC100132426          0.760   PREDICTED: similar to hCG1742442 
LOC642838             0.744   PREDICTED: similar to hCG1742442 
LOC100287723          0.723   PREDICTED: hypothetical protein XP_002342271 
LOC100288993          0.700   PREDICTED: hypothetical protein XP_002342967 
LOC439957             0.608   PREDICTED: similar to hCG1742442 
LOC439957             0.608   PREDICTED: similar to hCG1742442 
LOC650405             0.412   PREDICTED: similar to hCG2042707 
LOC652493             0.379   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100130100          0.373   PREDICTED: similar to hCG26659 
LOC100291464          0.373   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.373   PREDICTED: similar to hCG26659 
LOC100128009          0.285   PREDICTED: hypothetical protein 
LOC100291731          0.285   PREDICTED: similar to hCG36857 
LOC100128009          0.285   PREDICTED: hypothetical protein 
LOC100290819          0.285   PREDICTED: hypothetical protein XP_002348319 
LOC100128009          0.285   PREDICTED: hypothetical protein 
LOC440871             0.281   PREDICTED: similar to hCG2043206 
LOC100291786          0.275   PREDICTED: similar to hCG2043206 
LOC100291682          0.267   PREDICTED: similar to hCG1686089 
LOC100290992          0.267   PREDICTED: hypothetical protein XP_002347049 
LOC100291027          0.263   PREDICTED: hypothetical protein XP_002348323 
LOC100290481          0.140   PREDICTED: hypothetical protein XP_002348153 
LOC100293277          0.133   PREDICTED: similar to hCG2040021 
LOC100293142          0.133   PREDICTED: similar to hCG2040019 
LOC100293440          0.129   PREDICTED: similar to Ig lambda chain 
LOC651536             0.085   PREDICTED: similar to hCG96018 
LOC651536             0.085   PREDICTED: similar to hCG96018 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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