Guide to the Human Genome
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Name: LOC643637 Sequence: fasta or formatted (333aa) NCBI GI: 239744367
Description:

PREDICTED: similar to hCG1729961 isoform 1

Referenced in:

Xenobiotic Pathways

Other entries for this name:
alt prot [527aa] PREDICTED: hypothetical protein
alt prot [527aa] PREDICTED: hypothetical protein
alt prot [302aa] PREDICTED: similar to hCG1729961 isoform 3
alt prot [279aa] PREDICTED: similar to hCG1729961 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         15           3
 C cysteine            2.1          7           1
 D aspartate           3.6         12           2
 E glutamate           7.5         25           2
 F phenylalanine       3.3         11           2
 G glycine             6.3         21           1
 H histidine           2.1          7           1
 I isoleucine          4.5         15           2
 K lysine              6.9         23           1
 L leucine            10.8         36           2
 M methionine          3.9         13           2
 N asparagine          5.7         19           1
 P proline             4.5         15           1
 Q glutamine           5.1         17           1
 R arginine            4.5         15           3
 S serine              8.1         27           1
 T threonine           3.0         10           1
 V valine              6.9         23           1
 W tryptophan          2.1          7           1
 Y tyrosine            4.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1729961 isoform 1 
LOC643637             0.843   PREDICTED: similar to hCG1729961 isoform 3 
GLYATL1               0.812   glycine-N-acyltransferase-like 1 
LOC100287520          0.799   PREDICTED: hypothetical protein XP_002343130 
LOC643637             0.748   PREDICTED: similar to hCG1729961 isoform 2 
LOC643637             0.669   PREDICTED: hypothetical protein 
LOC643637             0.667   PREDICTED: hypothetical protein 
GLYATL2               0.362   glycine-N-acyltransferase-like 2 
GLYAT                 0.295   glycine-N-acyltransferase isoform a 
C6orf140              0.211   glycine N-acyltransferase-like protein 3 
GLYAT                 0.172   glycine-N-acyltransferase isoform b 
PDE4DIP               0.012   phosphodiesterase 4D interacting protein isoform 1 ...
NSUN5C                0.012   NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho...
KDM5B                 0.006   jumonji, AT rich interactive domain 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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