LOC399939 36796

Name: LOC399939	Sequence: fasta or formatted (452aa)		NCBI GI: 89034196
Description: PREDICTED: similar to ring finger protein 18		Referenced in: Tripartite Motif Family
Other entries for this name: alt mRNA [452aa] PREDICTED: similar to ring finger protein 18
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.6 21 2 C cysteine 5.1 23 2 D aspartate 3.5 16 1 E glutamate 6.6 30 3 F phenylalanine 4.6 21 1 G glycine 4.4 20 1 H histidine 5.3 24 2 I isoleucine 5.3 24 1 K lysine 5.8 26 3 L leucine 10.6 48 2 M methionine 2.2 10 1 N asparagine 5.3 24 1 P proline 4.6 21 2 Q glutamine 4.2 19 2 R arginine 6.9 31 2 S serine 6.4 29 3 T threonine 5.5 25 2 V valine 4.4 20 1 W tryptophan 2.2 10 1 Y tyrosine 2.2 10 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to ring finger protein 18 LOC729384 1.000 hypothetical protein LOC729384 LOC100134006 1.000 PREDICTED: similar to ring finger protein 18 isofor... LOC399939 1.000 PREDICTED: similar to ring finger protein 18 LOC100131392 1.000 PREDICTED: similar to ring finger protein 18 LOC653111 0.838 PREDICTED: similar to ring finger protein 18 LOC283116 0.834 PREDICTED: similar to ring finger protein 18 isofor... LOC283116 0.834 PREDICTED: similar to ring finger protein 18 LOC283116 0.834 PREDICTED: similar to ring finger protein 18 TRIM49 0.834 ring finger protein 18 SPRYD5 0.724 SPRY domain containing 5 LOC120824 0.690 PREDICTED: similar to hCG1802386 LOC120824 0.690 PREDICTED: similar to hCG1802386 LOC120824 0.690 PREDICTED: similar to hCG1802386 LOC283116 0.630 PREDICTED: similar to ring finger protein 18 isofor... TRIM53 0.559 tripartite motif-containing 53 LOC642425 0.559 tripartite motif-containing 53-like LOC642425 0.559 PREDICTED: tripartite motif-containing 53-like [Hom... LOC340970 0.537 PREDICTED: similar to tripartite motif-containing 5... LOC340970 0.537 PREDICTED: similar to tripartite motif-containing 5... LOC340970 0.534 PREDICTED: similar to tripartite motif-containing 5... TRIM43 0.446 tripartite motif-containing 43 LOC653192 0.436 PREDICTED: Tripartite motif-containing protein 43-li... LOC642446 0.369 PREDICTED: tripartite motif-containing protein 64B-... TRIM64 0.369 tripartite motif-containing 64 LOC646754 0.348 PREDICTED: tripartite motif-containing protein 64C-... LOC646754 0.348 PREDICTED: tripartite motif-containing protein 64C-... LOC646754 0.348 PREDICTED: tripartite motif-containing protein 64C-... TRIM48 0.345 tripartite motif-containing 48 LOC100289112 0.338 PREDICTED: hypothetical protein XP_002343148 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.