Guide to the Human Genome
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Name: LOC399939 Sequence: fasta or formatted (452aa) NCBI GI: 89034196
Description:

PREDICTED: similar to ring finger protein 18

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt mRNA [452aa] PREDICTED: similar to ring finger protein 18
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         21           2
 C cysteine            5.1         23           2
 D aspartate           3.5         16           1
 E glutamate           6.6         30           3
 F phenylalanine       4.6         21           1
 G glycine             4.4         20           1
 H histidine           5.3         24           2
 I isoleucine          5.3         24           1
 K lysine              5.8         26           3
 L leucine            10.6         48           2
 M methionine          2.2         10           1
 N asparagine          5.3         24           1
 P proline             4.6         21           2
 Q glutamine           4.2         19           2
 R arginine            6.9         31           2
 S serine              6.4         29           3
 T threonine           5.5         25           2
 V valine              4.4         20           1
 W tryptophan          2.2         10           1
 Y tyrosine            2.2         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ring finger protein 18 
LOC729384             1.000   hypothetical protein LOC729384 
LOC100134006          1.000   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             1.000   PREDICTED: similar to ring finger protein 18 
LOC100131392          1.000   PREDICTED: similar to ring finger protein 18 
LOC653111             0.838   PREDICTED: similar to ring finger protein 18 
LOC283116             0.834   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.834   PREDICTED: similar to ring finger protein 18 
LOC283116             0.834   PREDICTED: similar to ring finger protein 18 
TRIM49                0.834   ring finger protein 18 
SPRYD5                0.724   SPRY domain containing 5 
LOC120824             0.690   PREDICTED: similar to hCG1802386 
LOC120824             0.690   PREDICTED: similar to hCG1802386 
LOC120824             0.690   PREDICTED: similar to hCG1802386 
LOC283116             0.630   PREDICTED: similar to ring finger protein 18 isofor...
TRIM53                0.559   tripartite motif-containing 53 
LOC642425             0.559   tripartite motif-containing 53-like 
LOC642425             0.559   PREDICTED: tripartite motif-containing 53-like [Hom...
LOC340970             0.537   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.537   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.534   PREDICTED: similar to tripartite motif-containing 5...
TRIM43                0.446   tripartite motif-containing 43 
LOC653192             0.436   PREDICTED: Tripartite motif-containing protein 43-li...
LOC642446             0.369   PREDICTED: tripartite motif-containing protein 64B-...
TRIM64                0.369   tripartite motif-containing 64 
LOC646754             0.348   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.348   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.348   PREDICTED: tripartite motif-containing protein 64C-...
TRIM48                0.345   tripartite motif-containing 48 
LOC100289112          0.338   PREDICTED: hypothetical protein XP_002343148 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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