Guide to the Human Genome
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Name: LOC100128088 Sequence: fasta or formatted (198aa) NCBI GI: 169202084
Description:

PREDICTED: similar to hCG2042634

Not currently referenced in the text

Other entries for this name:
alt prot {358aa} PREDICTED: similar to hCG2042634
alt prot {198aa} PREDICTED: similar to hCG2042634
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         11           2
 C cysteine            0.5          1           1
 D aspartate          11.6         23           2
 E glutamate           5.6         11           1
 F phenylalanine       7.1         14           2
 G glycine             7.1         14           2
 H histidine           3.0          6           1
 I isoleucine          4.5          9           2
 K lysine              6.1         12           2
 L leucine             5.6         11           2
 M methionine          1.5          3           1
 N asparagine          4.0          8           1
 P proline             5.6         11           2
 Q glutamine           3.5          7           1
 R arginine            4.5          9           1
 S serine              7.1         14           2
 T threonine           4.0          8           1
 V valine              6.1         12           2
 W tryptophan          2.5          5           1
 Y tyrosine            4.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042634 
LOC100128088          0.995   PREDICTED: similar to hCG2042634 
LOC100128088          0.856   PREDICTED: similar to hCG2042634 
MMP1                  0.222   matrix metalloproteinase 1 isoform 2 
MMP1                  0.222   matrix metalloproteinase 1 isoform 1 preproprotein [H...
MMP8                  0.179   matrix metalloproteinase 8 preproprotein 
MMP3                  0.179   matrix metalloproteinase 3 preproprotein 
MMP10                 0.176   matrix metalloproteinase 10 preproprotein 
MMP9                  0.174   matrix metalloproteinase 9 preproprotein 
MMP13                 0.161   matrix metalloproteinase 13 preproprotein 
MMP2                  0.151   matrix metalloproteinase 2 isoform b 
MMP2                  0.151   matrix metalloproteinase 2 isoform a preproprotein [...
MMP27                 0.144   matrix metalloproteinase 27 
MMP20                 0.134   matrix metalloproteinase 20 preproprotein 
MMP24                 0.134   matrix metalloproteinase 24 preproprotein 
MMP12                 0.131   matrix metalloproteinase 12 preproprotein 
MMP16                 0.128   matrix metalloproteinase 16 isoform 2 preproprotein...
MMP16                 0.128   matrix metalloproteinase 16 isoform 1 preproprotein ...
MMP7                  0.108   matrix metalloproteinase 7 preproprotein 
MMP14                 0.106   matrix metalloproteinase 14 preproprotein 
MMP15                 0.098   matrix metalloproteinase 15 preproprotein 
MMP11                 0.093   matrix metalloproteinase 11 preproprotein 
MMP17                 0.076   matrix metalloproteinase 17 preproprotein 
MMP25                 0.063   matrix metalloproteinase 25 preproprotein 
MMP28                 0.060   matrix metalloproteinase 28 isoform 1 preproprotein ...
MMP26                 0.058   matrix metalloproteinase 26 preproprotein 
MMP19                 0.043   matrix metalloproteinase 19 isoform rasi-1 preproprot...
MMP21                 0.028   matrix metalloproteinase 21 preproprotein 
VTN                   0.025   vitronectin precursor 
PRG4                  0.023   proteoglycan 4 isoform D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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