Guide to the Human Genome
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Name: MMP10 Sequence: fasta or formatted (476aa) NCBI GI: 4505205
Description:

matrix metalloproteinase 10 preproprotein

Referenced in:

Metalloproteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         35           2
 C cysteine            1.1          5           1
 D aspartate           6.9         33           3
 E glutamate           6.5         31           2
 F phenylalanine       7.6         36           2
 G glycine             6.3         30           1
 H histidine           3.2         15           1
 I isoleucine          3.6         17           1
 K lysine              6.1         29           3
 L leucine             9.0         43           2
 M methionine          2.1         10           2
 N asparagine          3.2         15           1
 P proline             6.9         33           3
 Q glutamine           2.7         13           2
 R arginine            4.2         20           2
 S serine              7.6         36           2
 T threonine           4.2         20           1
 V valine              5.3         25           1
 W tryptophan          1.9          9           1
 Y tyrosine            4.4         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   matrix metalloproteinase 10 preproprotein 
MMP3                  0.795   matrix metalloproteinase 3 preproprotein 
MMP1                  0.493   matrix metalloproteinase 1 isoform 1 preproprotein [H...
MMP13                 0.471   matrix metalloproteinase 13 preproprotein 
MMP12                 0.467   matrix metalloproteinase 12 preproprotein 
MMP27                 0.466   matrix metalloproteinase 27 
MMP8                  0.463   matrix metalloproteinase 8 preproprotein 
MMP1                  0.457   matrix metalloproteinase 1 isoform 2 
MMP20                 0.405   matrix metalloproteinase 20 preproprotein 
MMP24                 0.279   matrix metalloproteinase 24 preproprotein 
MMP16                 0.269   matrix metalloproteinase 16 isoform 1 preproprotein ...
MMP14                 0.265   matrix metalloproteinase 14 preproprotein 
MMP15                 0.260   matrix metalloproteinase 15 preproprotein 
MMP17                 0.245   matrix metalloproteinase 17 preproprotein 
MMP11                 0.231   matrix metalloproteinase 11 preproprotein 
MMP7                  0.230   matrix metalloproteinase 7 preproprotein 
MMP25                 0.221   matrix metalloproteinase 25 preproprotein 
MMP19                 0.212   matrix metalloproteinase 19 isoform rasi-1 preproprot...
MMP16                 0.202   matrix metalloproteinase 16 isoform 2 preproprotein...
MMP2                  0.198   matrix metalloproteinase 2 isoform b 
MMP2                  0.198   matrix metalloproteinase 2 isoform a preproprotein [...
MMP28                 0.168   matrix metalloproteinase 28 isoform 1 preproprotein ...
MMP26                 0.165   matrix metalloproteinase 26 preproprotein 
MMP9                  0.160   matrix metalloproteinase 9 preproprotein 
MMP21                 0.126   matrix metalloproteinase 21 preproprotein 
LOC100128088          0.080   PREDICTED: similar to hCG2042634 
LOC100128088          0.072   PREDICTED: similar to hCG2042634 
LOC100128088          0.071   PREDICTED: similar to hCG2042634 
MMP23B                0.070   matrix metalloproteinase 23B precursor 
LOC100289688          0.062   PREDICTED: hypothetical protein XP_002347374 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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