Guide to the Human Genome
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Name: MMP7 Sequence: fasta or formatted (267aa) NCBI GI: 4505219
Description:

matrix metalloproteinase 7 preproprotein

Referenced in:

Metalloproteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         18           2
 C cysteine            1.1          3           1
 D aspartate           6.0         16           2
 E glutamate           4.5         12           1
 F phenylalanine       4.1         11           2
 G glycine             9.7         26           2
 H histidine           3.0          8           1
 I isoleucine          4.1         11           1
 K lysine              6.4         17           2
 L leucine            10.1         27           2
 M methionine          3.4          9           1
 N asparagine          4.1         11           1
 P proline             6.0         16           1
 Q glutamine           3.4          9           1
 R arginine            4.5         12           1
 S serine              7.1         19           2
 T threonine           4.9         13           1
 V valine              4.9         13           2
 W tryptophan          1.9          5           1
 Y tyrosine            4.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   matrix metalloproteinase 7 preproprotein 
MMP20                 0.438   matrix metalloproteinase 20 preproprotein 
MMP3                  0.423   matrix metalloproteinase 3 preproprotein 
MMP10                 0.419   matrix metalloproteinase 10 preproprotein 
MMP13                 0.411   matrix metalloproteinase 13 preproprotein 
MMP12                 0.402   matrix metalloproteinase 12 preproprotein 
MMP1                  0.398   matrix metalloproteinase 1 isoform 1 preproprotein [H...
MMP8                  0.398   matrix metalloproteinase 8 preproprotein 
MMP27                 0.377   matrix metalloproteinase 27 
MMP1                  0.375   matrix metalloproteinase 1 isoform 2 
MMP24                 0.338   matrix metalloproteinase 24 preproprotein 
MMP15                 0.325   matrix metalloproteinase 15 preproprotein 
MMP2                  0.321   matrix metalloproteinase 2 isoform a preproprotein [...
MMP26                 0.321   matrix metalloproteinase 26 preproprotein 
MMP2                  0.309   matrix metalloproteinase 2 isoform b 
MMP14                 0.296   matrix metalloproteinase 14 preproprotein 
MMP16                 0.292   matrix metalloproteinase 16 isoform 2 preproprotein...
MMP16                 0.292   matrix metalloproteinase 16 isoform 1 preproprotein ...
MMP25                 0.292   matrix metalloproteinase 25 preproprotein 
MMP17                 0.251   matrix metalloproteinase 17 preproprotein 
MMP19                 0.230   matrix metalloproteinase 19 isoform rasi-1 preproprot...
MMP11                 0.225   matrix metalloproteinase 11 preproprotein 
MMP9                  0.219   matrix metalloproteinase 9 preproprotein 
MMP28                 0.204   matrix metalloproteinase 28 isoform 1 preproprotein ...
MMP21                 0.157   matrix metalloproteinase 21 preproprotein 
MMP23B                0.121   matrix metalloproteinase 23B precursor 
LOC100128088          0.081   PREDICTED: similar to hCG2042634 
LOC100128088          0.077   PREDICTED: similar to hCG2042634 
LOC100128088          0.077   PREDICTED: similar to hCG2042634 
LOC100289688          0.074   PREDICTED: hypothetical protein XP_002347374 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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