MMP1 15141

Name: MMP1	Sequence: fasta or formatted (403aa)		NCBI GI: 225543094
Description: matrix metalloproteinase 1 isoform 2		Referenced in: Collagen Metalloproteases
Other entries for this name: alt prot [469aa] matrix metalloproteinase 1 isoform 1 preproprotein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 26 2 C cysteine 0.7 3 1 D aspartate 7.4 30 2 E glutamate 5.0 20 2 F phenylalanine 8.2 33 2 G glycine 7.9 32 2 H histidine 3.5 14 1 I isoleucine 4.5 18 1 K lysine 6.0 24 1 L leucine 5.5 22 1 M methionine 2.2 9 1 N asparagine 4.7 19 2 P proline 6.5 26 1 Q glutamine 4.5 18 1 R arginine 5.2 21 1 S serine 4.2 17 2 T threonine 5.7 23 2 V valine 5.5 22 1 W tryptophan 1.7 7 1 Y tyrosine 4.7 19 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 matrix metalloproteinase 1 isoform 2 MMP1 1.000 matrix metalloproteinase 1 isoform 1 preproprotein [H... MMP8 0.602 matrix metalloproteinase 8 preproprotein MMP3 0.543 matrix metalloproteinase 3 preproprotein MMP10 0.533 matrix metalloproteinase 10 preproprotein MMP13 0.499 matrix metalloproteinase 13 preproprotein MMP12 0.484 matrix metalloproteinase 12 preproprotein MMP27 0.470 matrix metalloproteinase 27 MMP20 0.433 matrix metalloproteinase 20 preproprotein MMP24 0.327 matrix metalloproteinase 24 preproprotein MMP16 0.311 matrix metalloproteinase 16 isoform 1 preproprotein ... MMP14 0.293 matrix metalloproteinase 14 preproprotein MMP15 0.290 matrix metalloproteinase 15 preproprotein MMP11 0.269 matrix metalloproteinase 11 preproprotein MMP17 0.249 matrix metalloproteinase 17 preproprotein MMP7 0.240 matrix metalloproteinase 7 preproprotein MMP2 0.233 matrix metalloproteinase 2 isoform b MMP2 0.233 matrix metalloproteinase 2 isoform a preproprotein [... MMP16 0.217 matrix metalloproteinase 16 isoform 2 preproprotein... MMP19 0.216 matrix metalloproteinase 19 isoform rasi-1 preproprot... MMP25 0.212 matrix metalloproteinase 25 preproprotein MMP28 0.200 matrix metalloproteinase 28 isoform 1 preproprotein ... MMP26 0.173 matrix metalloproteinase 26 preproprotein MMP9 0.164 matrix metalloproteinase 9 preproprotein MMP21 0.119 matrix metalloproteinase 21 preproprotein LOC100128088 0.106 PREDICTED: similar to hCG2042634 LOC100128088 0.106 PREDICTED: similar to hCG2042634 LOC100128088 0.106 PREDICTED: similar to hCG2042634 MMP23B 0.099 matrix metalloproteinase 23B precursor LOC100289688 0.066 PREDICTED: hypothetical protein XP_002347374 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.