MMP1 29008

Name: MMP1	Sequence: fasta or formatted (469aa)		NCBI GI: 4505215
Description: matrix metalloproteinase 1 isoform 1 preproprotein		Referenced in: Collagen Metalloproteases
Other entries for this name: alt prot [403aa] matrix metalloproteinase 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 27 2 C cysteine 0.6 3 1 D aspartate 7.0 33 2 E glutamate 5.3 25 2 F phenylalanine 7.7 36 2 G glycine 7.5 35 2 H histidine 3.4 16 1 I isoleucine 3.8 18 1 K lysine 6.4 30 1 L leucine 6.8 32 5 M methionine 2.1 10 1 N asparagine 4.7 22 2 P proline 6.4 30 2 Q glutamine 4.9 23 1 R arginine 5.1 24 2 S serine 4.5 21 2 T threonine 5.3 25 2 V valine 6.2 29 2 W tryptophan 1.7 8 1 Y tyrosine 4.7 22 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 matrix metalloproteinase 1 isoform 1 preproprotein [H... MMP1 0.861 matrix metalloproteinase 1 isoform 2 MMP8 0.556 matrix metalloproteinase 8 preproprotein MMP3 0.520 matrix metalloproteinase 3 preproprotein MMP10 0.495 matrix metalloproteinase 10 preproprotein MMP13 0.449 matrix metalloproteinase 13 preproprotein MMP12 0.445 matrix metalloproteinase 12 preproprotein MMP27 0.441 matrix metalloproteinase 27 MMP20 0.396 matrix metalloproteinase 20 preproprotein MMP24 0.283 matrix metalloproteinase 24 preproprotein MMP16 0.275 matrix metalloproteinase 16 isoform 1 preproprotein ... MMP15 0.258 matrix metalloproteinase 15 preproprotein MMP14 0.256 matrix metalloproteinase 14 preproprotein MMP11 0.231 matrix metalloproteinase 11 preproprotein MMP17 0.222 matrix metalloproteinase 17 preproprotein MMP7 0.219 matrix metalloproteinase 7 preproprotein MMP2 0.200 matrix metalloproteinase 2 isoform b MMP2 0.200 matrix metalloproteinase 2 isoform a preproprotein [... MMP16 0.194 matrix metalloproteinase 16 isoform 2 preproprotein... MMP19 0.192 matrix metalloproteinase 19 isoform rasi-1 preproprot... MMP25 0.189 matrix metalloproteinase 25 preproprotein MMP28 0.183 matrix metalloproteinase 28 isoform 1 preproprotein ... MMP9 0.155 matrix metalloproteinase 9 preproprotein MMP26 0.152 matrix metalloproteinase 26 preproprotein LOC100128088 0.119 PREDICTED: similar to hCG2042634 MMP21 0.107 matrix metalloproteinase 21 preproprotein LOC100128088 0.091 PREDICTED: similar to hCG2042634 LOC100128088 0.091 PREDICTED: similar to hCG2042634 MMP23B 0.085 matrix metalloproteinase 23B precursor LOC100289688 0.064 PREDICTED: hypothetical protein XP_002347374 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.