Guide to the Human Genome
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Name: MMP13 Sequence: fasta or formatted (471aa) NCBI GI: 4505209
Description:

matrix metalloproteinase 13 preproprotein

Referenced in:

Collagen
Metalloproteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         25           2
 C cysteine            0.8          4           1
 D aspartate           8.7         41           3
 E glutamate           5.7         27           2
 F phenylalanine       6.8         32           2
 G glycine             7.4         35           2
 H histidine           3.8         18           1
 I isoleucine          5.1         24           1
 K lysine              6.2         29           2
 L leucine             9.1         43           2
 M methionine          2.5         12           1
 N asparagine          3.8         18           1
 P proline             7.0         33           2
 Q glutamine           1.7          8           2
 R arginine            4.0         19           1
 S serine              6.4         30           3
 T threonine           4.7         22           1
 V valine              4.2         20           1
 W tryptophan          2.1         10           1
 Y tyrosine            4.5         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   matrix metalloproteinase 13 preproprotein 
MMP3                  0.478   matrix metalloproteinase 3 preproprotein 
MMP10                 0.468   matrix metalloproteinase 10 preproprotein 
MMP8                  0.465   matrix metalloproteinase 8 preproprotein 
MMP1                  0.445   matrix metalloproteinase 1 isoform 1 preproprotein [H...
MMP27                 0.428   matrix metalloproteinase 27 
MMP1                  0.426   matrix metalloproteinase 1 isoform 2 
MMP12                 0.412   matrix metalloproteinase 12 preproprotein 
MMP20                 0.403   matrix metalloproteinase 20 preproprotein 
MMP16                 0.286   matrix metalloproteinase 16 isoform 1 preproprotein ...
MMP14                 0.277   matrix metalloproteinase 14 preproprotein 
MMP24                 0.276   matrix metalloproteinase 24 preproprotein 
MMP15                 0.256   matrix metalloproteinase 15 preproprotein 
MMP17                 0.226   matrix metalloproteinase 17 preproprotein 
MMP7                  0.224   matrix metalloproteinase 7 preproprotein 
MMP16                 0.220   matrix metalloproteinase 16 isoform 2 preproprotein...
MMP11                 0.213   matrix metalloproteinase 11 preproprotein 
MMP25                 0.206   matrix metalloproteinase 25 preproprotein 
MMP2                  0.204   matrix metalloproteinase 2 isoform b 
MMP2                  0.204   matrix metalloproteinase 2 isoform a preproprotein [...
MMP19                 0.197   matrix metalloproteinase 19 isoform rasi-1 preproprot...
MMP26                 0.176   matrix metalloproteinase 26 preproprotein 
MMP28                 0.173   matrix metalloproteinase 28 isoform 1 preproprotein ...
MMP9                  0.159   matrix metalloproteinase 9 preproprotein 
MMP21                 0.104   matrix metalloproteinase 21 preproprotein 
MMP23B                0.078   matrix metalloproteinase 23B precursor 
LOC100128088          0.068   PREDICTED: similar to hCG2042634 
LOC100128088          0.066   PREDICTED: similar to hCG2042634 
LOC100128088          0.066   PREDICTED: similar to hCG2042634 
LOC100289688          0.053   PREDICTED: hypothetical protein XP_002347374 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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