Guide to the Human Genome
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Name: LOC100129035 Sequence: fasta or formatted (103aa) NCBI GI: 169178377
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {103aa} PREDICTED: hypothetical protein
alt prot {103aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.4         20           4
 C cysteine            1.0          1           1
 D aspartate           1.9          2           2
 E glutamate           2.9          3           1
 F phenylalanine       2.9          3           1
 G glycine             9.7         10           2
 H histidine           1.0          1           1
 I isoleucine          1.0          1           1
 K lysine              3.9          4           1
 L leucine             8.7          9           2
 M methionine          1.9          2           1
 N asparagine          2.9          3           1
 P proline             9.7         10           1
 Q glutamine           2.9          3           1
 R arginine           12.6         13           2
 S serine              6.8          7           1
 T threonine           4.9          5           1
 V valine              3.9          4           1
 W tryptophan          1.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129035          1.000   PREDICTED: hypothetical protein 
LOC100129035          0.989   PREDICTED: hypothetical protein 
LOC100293941          0.049   PREDICTED: hypothetical protein 
LOC100290130          0.049   PREDICTED: hypothetical protein XP_002346833 
LOC100287611          0.049   PREDICTED: hypothetical protein XP_002342665 
TMEM132A              0.043   transmembrane protein 132A isoform a 
TMEM132A              0.043   transmembrane protein 132A isoform b 
H1FX                  0.043   H1 histone family, member X 
HCN2                  0.038   hyperpolarization activated cyclic nucleotide-gated...
KIAA0182              0.038   genetic suppressor element 1 isoform 2 
KIAA0182              0.038   genetic suppressor element 1 isoform 1 
LOC100289661          0.033   PREDICTED: hypothetical protein 
LOC100289661          0.033   PREDICTED: hypothetical protein XP_002343723 
CCDC80                0.033   steroid-sensitive protein 1 
CCDC80                0.033   steroid-sensitive protein 1 
LOC100130360          0.027   PREDICTED: hypothetical protein 
SYNJ1                 0.027   synaptojanin 1 isoform d 
DSCAML1               0.027   Down syndrome cell adhesion molecule like 1 
LOC645971             0.027   PREDICTED: similar to hCG2036794 
HHIPL1                0.027   HHIP-like protein 1 isoform a 
PHF15                 0.027   PHD finger protein 15 
LOC645971             0.022   PREDICTED: similar to hCG2036794 
LOC100291076          0.022   PREDICTED: hypothetical protein XP_002347846 
LOC645971             0.022   PREDICTED: similar to hCG2036794 
FLJ37078              0.022   hypothetical protein LOC222183 
INSM1                 0.022   insulinoma-associated 1 
HTRA1                 0.022   HtrA serine peptidase 1 precursor 
SLC15A3               0.022   solute carrier family 15, member 3 
ITIH5L                0.016   inter-alpha (globulin) inhibitor H5-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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