Guide to the Human Genome
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Name: LOC100132144 Sequence: fasta or formatted (126aa) NCBI GI: 169177315
Description:

PREDICTED: similar to Protein FAM27D1

Not currently referenced in the text

Other entries for this name:
alt prot {122aa} PREDICTED: similar to family with sequence similarity 27, member ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1          9           2
 C cysteine            0.0          0           0
 D aspartate           1.6          2           1
 E glutamate           6.3          8           1
 F phenylalanine       1.6          2           1
 G glycine             6.3          8           1
 H histidine          10.3         13           1
 I isoleucine          2.4          3           1
 K lysine              4.0          5           1
 L leucine             5.6          7           2
 M methionine          3.2          4           1
 N asparagine          2.4          3           1
 P proline             6.3          8           2
 Q glutamine           7.9         10           1
 R arginine           17.5         22           2
 S serine              1.6          2           2
 T threonine          14.3         18           1
 V valine              0.8          1           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Protein FAM27D1 
LOC100132859          0.967   PREDICTED: similar to Protein FAM27D1 
LOC100287368          0.819   PREDICTED: hypothetical protein XP_002342958 
LOC100132144          0.811   PREDICTED: similar to family with sequence similari...
LOC100287410          0.807   PREDICTED: hypothetical protein XP_002342959 
LOC100290475          0.786   PREDICTED: hypothetical protein XP_002347092 
LOC100291805          0.720   PREDICTED: similar to Protein FAM27D1 
LOC100289998          0.720   PREDICTED: hypothetical protein XP_002347358 
LOC100287921          0.720   PREDICTED: hypothetical protein XP_002344254 
LOC100130830          0.720   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.720   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.720   PREDICTED: similar to Protein FAM27E2 
LOC100293262          0.716   PREDICTED: similar to Protein FAM27D1 
LOC100289697          0.716   PREDICTED: hypothetical protein XP_002346920 
LOC100287633          0.716   PREDICTED: hypothetical protein XP_002342769 
LOC100287633          0.716   PREDICTED: similar to Protein FAM27D1 
FAM27E3               0.679   PREDICTED: family with sequence similarity 27, memb...
LOC100132439          0.667   PREDICTED: similar to Protein FAM27E2 
LOC100292121          0.642   PREDICTED: similar to Protein FAM27D1 
LOC100289224          0.123   PREDICTED: hypothetical protein XP_002344297 
LOC100129488          0.062   PREDICTED: hypothetical protein 
LOC100288837          0.053   PREDICTED: hypothetical protein XP_002343931, parti...
ZNF608                0.049   zinc finger protein 608 
LOC100131738          0.041   PREDICTED: hypothetical protein 
C10orf71              0.037   hypothetical protein LOC118461 isoform 2 
LOC285556             0.037   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.037   PREDICTED: hypothetical protein LOC285556 
LOC100286959          0.037   PREDICTED: hypothetical protein XP_002343921 
LOC285556             0.037   PREDICTED: hypothetical protein LOC285556 
LOC100131202          0.033   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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