Guide to the Human Genome
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Name: LOC100132144 Sequence: fasta or formatted (122aa) NCBI GI: 239752497
Description:

PREDICTED: similar to family with sequence similarity 27, member D1, partial

Not currently referenced in the text

Other entries for this name:
alt prot {126aa} PREDICTED: similar to Protein FAM27D1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4          9           2
 C cysteine            0.0          0           0
 D aspartate           1.6          2           1
 E glutamate           9.0         11           1
 F phenylalanine       1.6          2           1
 G glycine             4.9          6           1
 H histidine          11.5         14           1
 I isoleucine          2.5          3           1
 K lysine              4.1          5           1
 L leucine             6.6          8           2
 M methionine          4.1          5           1
 N asparagine          0.8          1           1
 P proline             3.3          4           1
 Q glutamine           7.4          9           1
 R arginine           15.6         19           2
 S serine              2.5          3           2
 T threonine          14.8         18           1
 V valine              0.0          0           0
 W tryptophan          2.5          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to family with sequence similari... 
LOC100132144          0.835   PREDICTED: similar to Protein FAM27D1 
LOC100132859          0.818   PREDICTED: similar to Protein FAM27D1 
LOC100287368          0.716   PREDICTED: hypothetical protein XP_002342958 
LOC100287410          0.708   PREDICTED: hypothetical protein XP_002342959 
LOC100290475          0.708   PREDICTED: hypothetical protein XP_002347092 
LOC100293262          0.669   PREDICTED: similar to Protein FAM27D1 
LOC100289697          0.669   PREDICTED: hypothetical protein XP_002346920 
LOC100287633          0.669   PREDICTED: hypothetical protein XP_002342769 
LOC100287633          0.669   PREDICTED: similar to Protein FAM27D1 
LOC100132439          0.653   PREDICTED: similar to Protein FAM27E2 
FAM27E3               0.648   PREDICTED: family with sequence similarity 27, memb...
LOC100291805          0.623   PREDICTED: similar to Protein FAM27D1 
LOC100289998          0.623   PREDICTED: hypothetical protein XP_002347358 
LOC100287921          0.623   PREDICTED: hypothetical protein XP_002344254 
LOC100130830          0.606   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.606   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.606   PREDICTED: similar to Protein FAM27E2 
LOC100292121          0.551   PREDICTED: similar to Protein FAM27D1 
LOC100289224          0.114   PREDICTED: hypothetical protein XP_002344297 
LOC100129488          0.068   PREDICTED: hypothetical protein 
LOC100288837          0.051   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100286959          0.042   PREDICTED: hypothetical protein XP_002343921 
C10orf71              0.042   hypothetical protein LOC118461 isoform 2 
ZNF608                0.042   zinc finger protein 608 
LOC100129488          0.038   PREDICTED: hypothetical protein 
LOC100131202          0.034   PREDICTED: hypothetical protein 
AUTS2                 0.034   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.034   autism susceptibility candidate 2 isoform 1 
LOC100131202          0.030   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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