Guide to the Human Genome
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Name: LOC100130830 Sequence: fasta or formatted (126aa) NCBI GI: 239755774
Description:

PREDICTED: similar to Protein FAM27E2

Not currently referenced in the text

Other entries for this name:
alt mRNA {126aa} PREDICTED: similar to Protein FAM27E2
alt mRNA {126aa} PREDICTED: similar to Protein FAM27E2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          8           2
 C cysteine            1.6          2           2
 D aspartate           2.4          3           1
 E glutamate           5.6          7           1
 F phenylalanine       0.0          0           0
 G glycine             7.1          9           1
 H histidine           8.7         11           1
 I isoleucine          2.4          3           1
 K lysine              4.8          6           1
 L leucine             5.6          7           2
 M methionine          2.4          3           1
 N asparagine          2.4          3           1
 P proline             6.3          8           2
 Q glutamine           8.7         11           1
 R arginine           15.1         19           2
 S serine              2.4          3           2
 T threonine          13.5         17           1
 V valine              3.2          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Protein FAM27E2 
LOC100130830          1.000   PREDICTED: similar to Protein FAM27E2 
LOC100130830          1.000   PREDICTED: similar to Protein FAM27E2 
LOC100132144          0.726   PREDICTED: similar to Protein FAM27D1 
LOC100132859          0.701   PREDICTED: similar to Protein FAM27D1 
LOC100287368          0.689   PREDICTED: hypothetical protein XP_002342958 
LOC100287410          0.685   PREDICTED: hypothetical protein XP_002342959 
FAM27E3               0.668   PREDICTED: family with sequence similarity 27, memb...
LOC100290475          0.651   PREDICTED: hypothetical protein XP_002347092 
LOC100132439          0.651   PREDICTED: similar to Protein FAM27E2 
LOC100293262          0.622   PREDICTED: similar to Protein FAM27D1 
LOC100289697          0.622   PREDICTED: hypothetical protein XP_002346920 
LOC100287633          0.622   PREDICTED: hypothetical protein XP_002342769 
LOC100287633          0.622   PREDICTED: similar to Protein FAM27D1 
LOC100291805          0.618   PREDICTED: similar to Protein FAM27D1 
LOC100289998          0.618   PREDICTED: hypothetical protein XP_002347358 
LOC100287921          0.618   PREDICTED: hypothetical protein XP_002344254 
LOC100132144          0.593   PREDICTED: similar to family with sequence similari...
LOC100292121          0.577   PREDICTED: similar to Protein FAM27D1 
LOC100289224          0.120   PREDICTED: hypothetical protein XP_002344297 
LOC100129488          0.071   PREDICTED: hypothetical protein 
LOC100288837          0.054   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100286959          0.046   PREDICTED: hypothetical protein XP_002343921 
LOC100129488          0.041   PREDICTED: hypothetical protein 
LOC100131202          0.033   PREDICTED: hypothetical protein 
ACIN1                 0.029   apoptotic chromatin condensation inducer 1 
MARVELD3              0.029   MARVEL domain containing 3 isoform 1 
MARVELD3              0.029   MARVEL domain containing 3 isoform 2 
SFRS18                0.029   splicing factor, arginine/serine-rich 130 
SFRS18                0.029   splicing factor, arginine/serine-rich 130 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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