Guide to the Human Genome
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Name: LOC100291805 Sequence: fasta or formatted (122aa) NCBI GI: 239757459
Description:

PREDICTED: similar to Protein FAM27D1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4          9           2
 C cysteine            0.0          0           0
 D aspartate           2.5          3           1
 E glutamate           6.6          8           1
 F phenylalanine       2.5          3           1
 G glycine             8.2         10           1
 H histidine           8.2         10           1
 I isoleucine          1.6          2           1
 K lysine              5.7          7           1
 L leucine             5.7          7           2
 M methionine          2.5          3           1
 N asparagine          2.5          3           1
 P proline             4.9          6           2
 Q glutamine          10.7         13           2
 R arginine           13.1         16           2
 S serine              0.8          1           1
 T threonine          14.8         18           2
 V valine              0.8          1           1
 W tryptophan          1.6          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Protein FAM27D1 
LOC100289998          1.000   PREDICTED: hypothetical protein XP_002347358 
LOC100287921          1.000   PREDICTED: hypothetical protein XP_002344254 
LOC100287410          0.786   PREDICTED: hypothetical protein XP_002342959 
LOC100287368          0.778   PREDICTED: hypothetical protein XP_002342958 
LOC100290475          0.765   PREDICTED: hypothetical protein XP_002347092 
LOC100132144          0.748   PREDICTED: similar to Protein FAM27D1 
LOC100132859          0.739   PREDICTED: similar to Protein FAM27D1 
LOC100293262          0.654   PREDICTED: similar to Protein FAM27D1 
LOC100289697          0.654   PREDICTED: hypothetical protein XP_002346920 
LOC100287633          0.654   PREDICTED: hypothetical protein XP_002342769 
LOC100287633          0.654   PREDICTED: similar to Protein FAM27D1 
LOC100130830          0.637   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.637   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.637   PREDICTED: similar to Protein FAM27E2 
FAM27E3               0.632   PREDICTED: family with sequence similarity 27, memb...
LOC100132144          0.628   PREDICTED: similar to family with sequence similari...
LOC100132439          0.620   PREDICTED: similar to Protein FAM27E2 
LOC100292121          0.534   PREDICTED: similar to Protein FAM27D1 
LOC100289224          0.085   PREDICTED: hypothetical protein XP_002344297 
LOC100129488          0.064   PREDICTED: hypothetical protein 
LOC100129488          0.034   PREDICTED: hypothetical protein 
LOC100288837          0.034   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100286959          0.030   PREDICTED: hypothetical protein XP_002343921 
FKBPL                 0.030   WAF-1/CIP1 stabilizing protein 39 
TOP1                  0.026   DNA topoisomerase I 
CRNN                  0.021   cornulin 
ACIN1                 0.021   apoptotic chromatin condensation inducer 1 
SFRS18                0.017   splicing factor, arginine/serine-rich 130 
SFRS18                0.017   splicing factor, arginine/serine-rich 130 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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