Guide to the Human Genome
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Name: LOC100287368 Sequence: fasta or formatted (125aa) NCBI GI: 239743788
Description:

PREDICTED: hypothetical protein XP_002342958

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4          8           2
 C cysteine            0.0          0           0
 D aspartate           2.4          3           1
 E glutamate           6.4          8           2
 F phenylalanine       0.0          0           0
 G glycine             6.4          8           1
 H histidine          10.4         13           1
 I isoleucine          0.8          1           1
 K lysine              4.8          6           1
 L leucine             8.0         10           2
 M methionine          4.0          5           1
 N asparagine          2.4          3           1
 P proline             4.8          6           2
 Q glutamine          10.4         13           3
 R arginine           16.0         20           2
 S serine              1.6          2           2
 T threonine          14.4         18           2
 V valine              0.0          0           0
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342958 
LOC100287410          0.950   PREDICTED: hypothetical protein XP_002342959 
LOC100290475          0.912   PREDICTED: hypothetical protein XP_002347092 
LOC100132859          0.833   PREDICTED: similar to Protein FAM27D1 
LOC100132144          0.833   PREDICTED: similar to Protein FAM27D1 
LOC100291805          0.762   PREDICTED: similar to Protein FAM27D1 
LOC100289998          0.762   PREDICTED: hypothetical protein XP_002347358 
LOC100287921          0.762   PREDICTED: hypothetical protein XP_002344254 
LOC100132144          0.707   PREDICTED: similar to family with sequence similari...
LOC100130830          0.695   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.695   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.695   PREDICTED: similar to Protein FAM27E2 
LOC100287633          0.690   PREDICTED: hypothetical protein XP_002342769 
LOC100287633          0.690   PREDICTED: similar to Protein FAM27D1 
LOC100293262          0.686   PREDICTED: similar to Protein FAM27D1 
LOC100289697          0.686   PREDICTED: hypothetical protein XP_002346920 
FAM27E3               0.644   PREDICTED: family with sequence similarity 27, memb...
LOC100132439          0.632   PREDICTED: similar to Protein FAM27E2 
LOC100292121          0.603   PREDICTED: similar to Protein FAM27D1 
LOC100289224          0.092   PREDICTED: hypothetical protein XP_002344297 
LOC100129488          0.063   PREDICTED: hypothetical protein 
SFRS18                0.059   splicing factor, arginine/serine-rich 130 
SFRS18                0.059   splicing factor, arginine/serine-rich 130 
LOC100288837          0.046   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100286959          0.042   PREDICTED: hypothetical protein XP_002343921 
LOC100131202          0.042   PREDICTED: hypothetical protein 
CROP                  0.042   cisplatin resistance-associated overexpressed protei...
CROP                  0.042   cisplatin resistance-associated overexpressed protei...
IK                    0.038   RED protein 
LOC285556             0.029   PREDICTED: hypothetical protein LOC285556 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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