Guide to the Human Genome
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Name: LOC100132439 Sequence: fasta or formatted (113aa) NCBI GI: 169177259
Description:

PREDICTED: similar to Protein FAM27E2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          6           2
 C cysteine            0.9          1           1
 D aspartate           2.7          3           1
 E glutamate           6.2          7           1
 F phenylalanine       0.9          1           1
 G glycine             7.1          8           1
 H histidine           9.7         11           1
 I isoleucine          2.7          3           1
 K lysine              2.7          3           1
 L leucine             7.1          8           2
 M methionine          2.7          3           1
 N asparagine          1.8          2           1
 P proline             2.7          3           1
 Q glutamine           7.1          8           1
 R arginine           20.4         23           3
 S serine              1.8          2           2
 T threonine          15.9         18           2
 V valine              0.9          1           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Protein FAM27E2 
FAM27E3               0.991   PREDICTED: family with sequence similarity 27, memb...
LOC100132144          0.757   PREDICTED: similar to Protein FAM27D1 
LOC100293262          0.752   PREDICTED: similar to Protein FAM27D1 
LOC100289697          0.752   PREDICTED: hypothetical protein XP_002346920 
LOC100287633          0.752   PREDICTED: hypothetical protein XP_002342769 
LOC100287633          0.752   PREDICTED: similar to Protein FAM27D1 
LOC100130830          0.734   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.734   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.734   PREDICTED: similar to Protein FAM27E2 
LOC100132859          0.720   PREDICTED: similar to Protein FAM27D1 
LOC100132144          0.720   PREDICTED: similar to family with sequence similari...
LOC100287410          0.715   PREDICTED: hypothetical protein XP_002342959 
LOC100287368          0.706   PREDICTED: hypothetical protein XP_002342958 
LOC100290475          0.692   PREDICTED: hypothetical protein XP_002347092 
LOC100291805          0.678   PREDICTED: similar to Protein FAM27D1 
LOC100289998          0.678   PREDICTED: hypothetical protein XP_002347358 
LOC100287921          0.678   PREDICTED: hypothetical protein XP_002344254 
LOC100292121          0.598   PREDICTED: similar to Protein FAM27D1 
LOC100289224          0.140   PREDICTED: hypothetical protein XP_002344297 
LOC100129488          0.089   PREDICTED: hypothetical protein 
LOC100286959          0.079   PREDICTED: hypothetical protein XP_002343921 
LOC100131202          0.065   PREDICTED: hypothetical protein 
LOC100288837          0.061   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100129488          0.056   PREDICTED: hypothetical protein 
ACIN1                 0.047   apoptotic chromatin condensation inducer 1 
ZNF608                0.037   zinc finger protein 608 
LOC100131202          0.033   PREDICTED: hypothetical protein 
SFRS18                0.033   splicing factor, arginine/serine-rich 130 
SFRS18                0.033   splicing factor, arginine/serine-rich 130 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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