Guide to the Human Genome
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Name: LOC100293262 Sequence: fasta or formatted (131aa) NCBI GI: 239754574
Description:

PREDICTED: similar to Protein FAM27D1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1          8           2
 C cysteine            0.8          1           1
 D aspartate           3.1          4           1
 E glutamate           5.3          7           1
 F phenylalanine       0.8          1           1
 G glycine             6.9          9           1
 H histidine          12.2         16           1
 I isoleucine          1.5          2           1
 K lysine              6.1          8           1
 L leucine             4.6          6           2
 M methionine          3.1          4           1
 N asparagine          1.5          2           1
 P proline             4.6          6           1
 Q glutamine           6.1          8           1
 R arginine           15.3         20           2
 S serine              4.6          6           2
 T threonine          14.5         19           2
 V valine              0.8          1           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Protein FAM27D1 
LOC100289697          1.000   PREDICTED: hypothetical protein XP_002346920 
LOC100287633          0.907   PREDICTED: hypothetical protein XP_002342769 
LOC100287633          0.907   PREDICTED: similar to Protein FAM27D1 
LOC100132144          0.672   PREDICTED: similar to Protein FAM27D1 
LOC100132859          0.656   PREDICTED: similar to Protein FAM27D1 
LOC100287368          0.633   PREDICTED: hypothetical protein XP_002342958 
FAM27E3               0.633   PREDICTED: family with sequence similarity 27, memb...
LOC100287410          0.625   PREDICTED: hypothetical protein XP_002342959 
LOC100132439          0.622   PREDICTED: similar to Protein FAM27E2 
LOC100132144          0.610   PREDICTED: similar to family with sequence similari...
LOC100290475          0.606   PREDICTED: hypothetical protein XP_002347092 
LOC100291805          0.591   PREDICTED: similar to Protein FAM27D1 
LOC100289998          0.591   PREDICTED: hypothetical protein XP_002347358 
LOC100287921          0.591   PREDICTED: hypothetical protein XP_002344254 
LOC100130830          0.579   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.579   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.579   PREDICTED: similar to Protein FAM27E2 
LOC100292121          0.548   PREDICTED: similar to Protein FAM27D1 
LOC100289224          0.108   PREDICTED: hypothetical protein XP_002344297 
C10orf71              0.077   hypothetical protein LOC118461 isoform 2 
FBRSL1                0.066   fibrosin-like 1 
FGFRL1                0.050   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.050   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.050   fibroblast growth factor receptor-like 1 precursor [...
LOC100129488          0.046   PREDICTED: hypothetical protein 
KRCC1                 0.039   lysine-rich coiled-coil 1 
PPIG                  0.035   peptidylprolyl isomerase G 
SLC39A7               0.031   solute carrier family 39, member 7 
SLC39A7               0.031   solute carrier family 39, member 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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