Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169173154
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169173154 PREDICTED: hypothetical protein [Homo sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169173154 PREDICTED: hypothetical protein [Homo sapiens] 153 3e-38
gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo sapi... 153 3e-38
gi|149944551 defensin, beta 131 [Homo sapiens] 150 2e-37
gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo sapi... 149 6e-37
gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo sapi... 148 8e-37
gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo sapi... 148 8e-37
gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo sapi... 148 8e-37
gi|239743495 PREDICTED: hypothetical protein XP_002342880 [Homo ... 148 1e-36
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 35 0.013
gi|82734219 beta-defensin 114 [Homo sapiens] 35 0.013
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 32 0.082
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 32 0.082
gi|18250304 beta defensin 129 precursor [Homo sapiens] 32 0.11
gi|16905373 beta-defensin 118 [Homo sapiens] 30 0.31
gi|103485139 defensin, beta 104A precursor [Homo sapiens] 28 1.2
gi|103485137 defensin, beta 104B precursor [Homo sapiens] 28 1.2
gi|50344744 beta-defensin 108B [Homo sapiens] 28 2.0
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 28 2.0
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|82734223 beta-defensin 124 [Homo sapiens] 27 3.5
gi|74136827 beta-defensin 134 [Homo sapiens] 27 4.5
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 26 5.9
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 26 7.7
>gi|169173154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 153 bits (386), Expect = 3e-38
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 153 bits (386), Expect = 3e-38
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|149944551 defensin, beta 131 [Homo sapiens]
Length = 70
Score = 150 bits (380), Expect = 2e-37
Identities = 69/70 (98%), Positives = 69/70 (98%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLM TVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 149 bits (375), Expect = 6e-37
Identities = 68/70 (97%), Positives = 68/70 (97%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLMSTVPP RSFISNDECPSEYYHCRLKCNADEHAI YCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPRRSFISNDECPSEYYHCRLKCNADEHAITYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 148 bits (374), Expect = 8e-37
Identities = 67/70 (95%), Positives = 68/70 (97%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLMSTVPP RSF SNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
II+IDGQKKW
Sbjct: 61 IIQIDGQKKW 70
>gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 148 bits (374), Expect = 8e-37
Identities = 67/70 (95%), Positives = 68/70 (97%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLMSTVPP RSF SNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
II+IDGQKKW
Sbjct: 61 IIQIDGQKKW 70
>gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 148 bits (374), Expect = 8e-37
Identities = 67/70 (95%), Positives = 68/70 (97%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLMSTVPP RSF SNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
II+IDGQKKW
Sbjct: 61 IIQIDGQKKW 70
>gi|239743495 PREDICTED: hypothetical protein XP_002342880 [Homo
sapiens]
Length = 70
Score = 148 bits (373), Expect = 1e-36
Identities = 68/70 (97%), Positives = 68/70 (97%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEH IRYCA FSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 35.0 bits (79), Expect = 0.013
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICC 57
M++L VL L+S + P C + Y CR +C+ E YC + +CC
Sbjct: 1 MKLLLLTLTVLLLLSQLTPG----GTQRCWNLYGKCRYRCSKKERVYVYCINNKMCC 53
>gi|82734219 beta-defensin 114 [Homo sapiens]
Length = 69
Score = 35.0 bits (79), Expect = 0.013
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCA-DFSICCKL 59
MR+ +++ + + +P + ++ D C Y C+ C E I C+ ICC
Sbjct: 1 MRIFYYLHFLCYVTFILPATCTLVNADRCTKRYGRCKRDCLESEKQIDICSLPRKICCTE 60
Query: 60 KIIEID 65
K+ E D
Sbjct: 61 KLYEED 66
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 32.3 bits (72), Expect = 0.082
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCK 58
MR F+F VL ++ PA++ +++C C+ C +E I C CC+
Sbjct: 1 MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCR 55
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 32.3 bits (72), Expect = 0.082
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCK 58
MR F+F VL ++ PA++ +++C C+ C +E I C CC+
Sbjct: 1 MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCR 55
>gi|18250304 beta defensin 129 precursor [Homo sapiens]
Length = 183
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
M++LF +F L L V FI C CR CN DE I+ C C K
Sbjct: 1 MKLLFPIFASLMLQYQVNT--EFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPK 58
Query: 61 IIEI 64
++++
Sbjct: 59 VVKL 62
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICC 57
M++L +L L+ V PA S +C + HCR +C E C + CC
Sbjct: 1 MKLLLLALPMLVLLPQVIPAYS--GEKKCWNRSGHCRKQCKDGEAVKDTCKNLRACC 55
>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
Length = 72
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59
M+ L + + L+ P RS D C CR KC + E+ I C + CC
Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
Query: 60 K 60
K
Sbjct: 61 K 61
>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
Length = 72
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59
M+ L + + L+ P RS D C CR KC + E+ I C + CC
Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
Query: 60 K 60
K
Sbjct: 61 K 61
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICC 57
MR+ +F + MS V PAR + C CR C E + C + CC
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 10/35 (28%)
Query: 27 DECPSEYY--HCRLKCNADEHAIRYCADFSICCKL 59
D CP YY HCR KCN CA+ C +L
Sbjct: 596 DGCPKGYYGKHCRKKCN--------CANRGRCHRL 622
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICC 57
MR+ +F + MS V PAR + C CR C E + C + CC
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSRPCC 56
>gi|82734223 beta-defensin 124 [Homo sapiens]
Length = 71
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 2 RVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICC 57
++L F+ +L ++ VP RS C C+ C E + C D S+CC
Sbjct: 3 QLLLFLVALL-VLGHVPSGRSEFKR--CWKGQGACQTYCTRQETYMHLCPDASLCC 55
>gi|74136827 beta-defensin 134 [Homo sapiens]
Length = 66
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYH--CRLKCNADEHAIRYCADFSICC 57
M+ L VF L L V + +S++ Y + CRL+C E + YC CC
Sbjct: 1 MKPLLVVFVFLFLWDPVLAGINSLSSEMHKKCYKNGICRLECYESEMLVAYCMFQLECC 59
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICC 57
M +L F + L++ V SF + HCR +C E I C + CC
Sbjct: 1 MNILMLTFIICGLLTRVTKG-SFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCC 56
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 35 HCRLKCNADEHAIRYCADFSICC 57
HCRL C E +I C + CC
Sbjct: 28 HCRLLCKDGEDSIIRCRNRKRCC 50
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.142 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,759,793
Number of Sequences: 37866
Number of extensions: 95429
Number of successful extensions: 270
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 23
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.