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Search of human proteins with 169173078
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169173078 PREDICTED: hypothetical protein [Homo sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169173078 PREDICTED: hypothetical protein [Homo sapiens] 827 0.0
gi|169172508 PREDICTED: hypothetical protein [Homo sapiens] 825 0.0
gi|169173306 PREDICTED: hypothetical protein [Homo sapiens] 383 e-106
gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo ... 154 2e-37
gi|239743560 PREDICTED: hypothetical protein XP_002342893 [Homo ... 154 2e-37
gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo ... 153 2e-37
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 49 8e-06
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 49 8e-06
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 49 1e-05
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 49 1e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 2e-05
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 48 2e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 3e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 47 3e-05
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 47 4e-05
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 47 4e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 46 7e-05
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 45 9e-05
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 45 9e-05
gi|13129104 coiled-coil domain containing 86 [Homo sapiens] 45 1e-04
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 45 2e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 2e-04
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 44 3e-04
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 44 3e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 44 3e-04
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|57222570 codanin 1 [Homo sapiens] 44 3e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 44 3e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 44 3e-04
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 43 4e-04
>gi|169173078 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 827 bits (2136), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQR 60
MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQR
Sbjct: 1 MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQR 60
Query: 61 PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS 120
PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS
Sbjct: 61 PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS 120
Query: 121 CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS 180
CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS
Sbjct: 121 CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS 180
Query: 181 SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR 240
SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR
Sbjct: 181 SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR 240
Query: 241 HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP 300
HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP
Sbjct: 241 HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP 300
Query: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS
Sbjct: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
Query: 361 IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR
Sbjct: 361 IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
>gi|169172508 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 825 bits (2132), Expect = 0.0
Identities = 401/402 (99%), Positives = 401/402 (99%)
Query: 1 MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQR 60
MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGG GAGVRPEPCAGQR
Sbjct: 1 MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQR 60
Query: 61 PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS 120
PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS
Sbjct: 61 PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS 120
Query: 121 CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS 180
CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS
Sbjct: 121 CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS 180
Query: 181 SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR 240
SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR
Sbjct: 181 SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR 240
Query: 241 HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP 300
HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP
Sbjct: 241 HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP 300
Query: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS
Sbjct: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
Query: 361 IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR
Sbjct: 361 IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
>gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 383 bits (983), Expect = e-106
Identities = 189/190 (99%), Positives = 189/190 (99%)
Query: 213 PGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAP 272
P RRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAP
Sbjct: 92 PRRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAP 151
Query: 273 KPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGA 332
KPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGA
Sbjct: 152 KPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGA 211
Query: 333 SSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLP 392
SSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLP
Sbjct: 212 SSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLP 271
Query: 393 SEESLSQRSR 402
SEESLSQRSR
Sbjct: 272 SEESLSQRSR 281
Score = 31.2 bits (69), Expect = 1.7
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 265 APGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATL 324
+P LPR P+ G R ++ +L G P P R P H + L
Sbjct: 32 SPALPRPGFPAPGFPALRLPRRRAQLGVKLGGGPSPASGARPSP---HLEGAGCETRPWL 88
Query: 325 RAPPGRGASSETMWP--TENLSSRRRAPPQR-RRTRAPSIARSLPGSGRLQ 372
P R + P L R A P R RR RAP +A + G R++
Sbjct: 89 GPRPRRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIR 139
>gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo
sapiens]
Length = 517
Score = 154 bits (388), Expect = 2e-37
Identities = 139/348 (39%), Positives = 163/348 (46%), Gaps = 90/348 (25%)
Query: 9 RDLRLAAGAGQAW-------------------GSAGRGRRGPAPRGQTGTQGVGSGGSGA 49
RDLR+A GAG+ G GRG+R R + T V A
Sbjct: 196 RDLRVAVGAGRRAVPGHRGGEESRVGVHAVQRGRVGRGQRVAVERRRAQTLAVAV--VAA 253
Query: 50 GVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGW--GTVLVSGLVPQDPRAAPPPGGR 107
VR + QR AGG+AL GE +AQA G+AAA G G + +S V + P
Sbjct: 254 HVRRQ----QRRAGGEALLGELEAQAVHGHAAALGAQRGRLRLSQAVQEAALHPLQP--- 306
Query: 108 QLLLLRPPRWV-------------PSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQ 154
L LL PPR V P C + + + Q R P
Sbjct: 307 -LHLLAPPRPVLVVGVVLHVLHAQPLCLLH-EGPLLRQRQRLP----------------- 347
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP----TWKAPDARLALGSA 210
R A GV + W + RQPLAL L P + PD LALGSA
Sbjct: 348 --------RLACTHLAQLGVVQVWI-----LLRQPLALVLSPHHESVHRPPDTGLALGSA 394
Query: 211 RGPGR------RLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHG 264
RGPGR RLALHL VP+GA++LGP GAQP HR QRA GLALVVTGVSRIR AHG
Sbjct: 395 RGPGRCSAVRRRLALHLHVPDGAQRLGPGAGAQPGHHRGQRALGLALVVTGVSRIRAAHG 454
Query: 265 APGLPRAPKPSAGRGGK--EGGERGTEMLR---RLRGSPRPNRHPRSG 307
APGLPR+P+PSAGR G G+E LR G P +R P SG
Sbjct: 455 APGLPRSPQPSAGRAASPDPGEGVGSEALRCPEGCAGLPARSRRPCSG 502
>gi|239743560 PREDICTED: hypothetical protein XP_002342893 [Homo
sapiens]
Length = 517
Score = 154 bits (388), Expect = 2e-37
Identities = 139/348 (39%), Positives = 163/348 (46%), Gaps = 90/348 (25%)
Query: 9 RDLRLAAGAGQAW-------------------GSAGRGRRGPAPRGQTGTQGVGSGGSGA 49
RDLR+A GAG+ G GRG+R R + T V A
Sbjct: 196 RDLRVAVGAGRRAVPGHRGGEESRVGVHAVQRGRVGRGQRVAVERRRAQTLAVAV--VAA 253
Query: 50 GVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGW--GTVLVSGLVPQDPRAAPPPGGR 107
VR + QR AGG+AL GE +AQA G+AAA G G + +S V + P
Sbjct: 254 HVRRQ----QRRAGGEALLGELEAQAVHGHAAALGAQRGRLRLSQAVQEAALHPLQP--- 306
Query: 108 QLLLLRPPRWV-------------PSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQ 154
L LL PPR V P C + + + Q R P
Sbjct: 307 -LHLLAPPRPVLVVGVVLHVLHAQPLCLLH-EGPLLRQRQRLP----------------- 347
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP----TWKAPDARLALGSA 210
R A GV + W + RQPLAL L P + PD LALGSA
Sbjct: 348 --------RLACTHLAQLGVVQVWI-----LLRQPLALVLSPHHESVHRPPDTGLALGSA 394
Query: 211 RGPGR------RLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHG 264
RGPGR RLALHL VP+GA++LGP GAQP HR QRA GLALVVTGVSRIR AHG
Sbjct: 395 RGPGRCSAVRRRLALHLHVPDGAQRLGPGAGAQPGHHRGQRALGLALVVTGVSRIRAAHG 454
Query: 265 APGLPRAPKPSAGRGGK--EGGERGTEMLR---RLRGSPRPNRHPRSG 307
APGLPR+P+PSAGR G G+E LR G P +R P SG
Sbjct: 455 APGLPRSPQPSAGRAASPDPGEGVGSEALRCPEGCAGLPARSRRPCSG 502
>gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo
sapiens]
Length = 517
Score = 153 bits (387), Expect = 2e-37
Identities = 139/348 (39%), Positives = 162/348 (46%), Gaps = 90/348 (25%)
Query: 9 RDLRLAAGAGQAW-------------------GSAGRGRRGPAPRGQTGTQGVGSGGSGA 49
RDLR+A GAG+ G GRG+R R + T V A
Sbjct: 196 RDLRVAVGAGRRAVPGHRGGEESRVGVHAVQRGRVGRGQRVAVERRRAQTLAVAV--VAA 253
Query: 50 GVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGW--GTVLVSGLVPQDPRAAPPPGGR 107
VR + QR AGG+AL GE +AQA G+AAA G G + +S V + P
Sbjct: 254 HVRRQ----QRRAGGEALLGELEAQAVHGHAAALGAQRGRLRLSQAVQEAALHPLQP--- 306
Query: 108 QLLLLRPPRWV-------------PSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQ 154
L LL PPR V P C + + + Q R P
Sbjct: 307 -LHLLAPPRPVLVVGVVLHVLHAQPLCLLH-EGPLLRQRQRLP----------------- 347
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP----TWKAPDARLALGSA 210
R A GV + W + RQPLAL L P + PD LALGSA
Sbjct: 348 --------RLACTHLAQLGVVQVWI-----LLRQPLALVLSPHHESVHRPPDTGLALGSA 394
Query: 211 RGPGR------RLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHG 264
RGPGR RLALHL VP+GA++LGP GAQP HR QRA GLALVVTGVSRIR AHG
Sbjct: 395 RGPGRCSAVRRRLALHLHVPDGAQRLGPGAGAQPGHHRGQRALGLALVVTGVSRIRAAHG 454
Query: 265 APGLPRAPKPSAGRGGK--EGGERGTEMLR---RLRGSPRPNRHPRSG 307
APGLPR+P+PSAGR G G E LR G P +R P SG
Sbjct: 455 APGLPRSPQPSAGRAASPDPGEGVGNEALRCPEGCAGLPARSRRPCSG 502
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 48.9 bits (115), Expect = 8e-06
Identities = 101/379 (26%), Positives = 140/379 (36%), Gaps = 76/379 (20%)
Query: 22 GSAGRGRRGPA-PRGQTGTQGVGSGGSGAGVRPE--------PCAGQRP---AGGKALRG 69
GS+ GR GP+ PRG ++ S G + PE P + P AGG A G
Sbjct: 142 GSSSYGRLGPSEPRGIYASERPKSLGDASPSAPEVVGARAAVPRSFSAPYPTAGGSA--G 199
Query: 70 EGQAQAAQGYAAANGWGTVL-VSGLVPQDPRAAPPP---------GGRQL-----LLLRP 114
+A+ A A + T + + + PR P GR L LLR
Sbjct: 200 PEACSSAERRARAGPFLTPSPLHAVAMRSPRPCGRPPTDSPDAGGAGRPLDGYISALLRR 259
Query: 115 PRWVPSCFPNSQ--SADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASP 172
R + P + AD + ++RP P A+P+ R G ++
Sbjct: 260 RRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDA-SPSPGSARPAREPSLERVGGHPTSPA 318
Query: 173 GVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGP 232
+ R+WASSW + P AP A + + GR + Q GA+
Sbjct: 319 ALSRAWASSWES--------EAAPEPAAPPAAPSPPDSPAEGR--LVKAQYIPGAQ---A 365
Query: 233 RTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLR 292
T P R R++ P L +R R +P PR +AGR G+ G
Sbjct: 366 ATRGLPGRAARRKPPPL-------TRGRSVEQSP--PRERPRAAGRRGRMAEASGR---- 412
Query: 293 RLRGSPRPNRHPRS-GPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPP 351
RGSPR + RS G ASA PP +PT R PP
Sbjct: 413 --RGSPRARKASRSQSETSLLGRASAVPS-----GPP--------KYPTAEREEPR--PP 455
Query: 352 QRRRTRAPSIARSLPGSGR 370
+ RR AP++A GS R
Sbjct: 456 RPRRGPAPTLAAQAAGSCR 474
Score = 38.9 bits (89), Expect = 0.008
Identities = 99/384 (25%), Positives = 126/384 (32%), Gaps = 74/384 (19%)
Query: 1 MRGLRACSR---DLRLAAGAGQ---AWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPE 54
MR R C R D A GAG+ + SA RR GQ T GG+ G R +
Sbjct: 226 MRSPRPCGRPPTDSPDAGGAGRPLDGYISALLRRRRRRGAGQPRTS---PGGADGGPRRQ 282
Query: 55 PCAGQRPAGGKALRG------EGQAQAAQGY-----AAANGWGTVLVSGLVPQD--PRAA 101
QRP G E + G+ A + W + S P+ P AA
Sbjct: 283 NSVRQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRAWASSWESEAAPEPAAPPAA 342
Query: 102 P-PPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRG 160
P PP L +++P +Q+A R A+R+P + P R
Sbjct: 343 PSPPDSPAEGRLVKAQYIPG----AQAATRGLPGRA-ARRKPPPLTRGRSVEQSPPRER- 396
Query: 161 SRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALH 220
PR+A + AS G PR R ++ LG A
Sbjct: 397 ------PRAAGRRGRMAEASGRRGSPRA------RKASRSQSETSLLGRASA-------- 436
Query: 221 LQVPEGARQL--GPRTGAQPSRHRRQRAPGLALVVTGVSR-------IRPAHGAPGLPRA 271
VP G + R +P R RR AP LA G R I A G PRA
Sbjct: 437 --VPSGPPKYPTAEREEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRA 494
Query: 272 PKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPV----PAHGV----------ASA 317
P G +L GS R GP+ PA GV AS
Sbjct: 495 PAARVPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESESSASE 554
Query: 318 AAGPATLRAPPGRGASSETMWPTE 341
PA A S +WP +
Sbjct: 555 GESPAFSSASSDSDGSGGLVWPQQ 578
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 48.9 bits (115), Expect = 8e-06
Identities = 77/312 (24%), Positives = 106/312 (33%), Gaps = 41/312 (13%)
Query: 95 PQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQ 154
P+ P+ AP PG + + S S AKR +H + P
Sbjct: 438 PESPKPAPAPGSHREI--------------SSSPTSKNRSHGRAKRDKSHSHTPS----- 478
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPG 214
R R SP +A G RS + G R P W+ + G +R P
Sbjct: 479 ----RRMGRSRSPATAKRGRSRSRTPTKRGHSRSR-----SPQWRRSRSAQRWGRSRSPQ 529
Query: 215 RR-LALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIR-PAHGAPGLPRAP 272
RR + Q P +R + + RR R+ + G SR R PA R P
Sbjct: 530 RRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTP 589
Query: 273 --KPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGR 330
+ S R R RR R R RS S + R+P R
Sbjct: 590 ARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSR------TRSPVRRRSRSRSPARR 643
Query: 331 GASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPP 390
S + P SR R P +R R+R+ + AR SGR + G++ R
Sbjct: 644 SGRSRSRTPARRGRSRSRTPARRGRSRSRTPARR---SGRSRSRTPARRGRSRSRTPRRG 700
Query: 391 LPSEESLSQRSR 402
SL +R R
Sbjct: 701 RSRSRSLVRRGR 712
Score = 43.9 bits (102), Expect = 3e-04
Identities = 101/424 (23%), Positives = 149/424 (35%), Gaps = 61/424 (14%)
Query: 23 SAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAG------QRPAGGKALRGEGQAQAA 76
S R R G +P + + SG+ PEP A +R G + +G G +
Sbjct: 1592 SPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEG 1651
Query: 77 QGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS-CFPN-SQSADISQED 134
++ S + R++P P + PPR S P ++ A +S+
Sbjct: 1652 SSSTESSPEHPPK-SRTARRGSRSSPEPKTKSRT---PPRRRSSRSSPELTRKARLSRRS 1707
Query: 135 RKPAKRRPTHFYHPDEHKAQPS--------HVRGSRR---PGSPRSASPGV-GRSWASSW 182
R + T P H+ PS R SRR SPR+ + GRS +
Sbjct: 1708 RSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKP 1767
Query: 183 AGVPRQPLALDLRPTWKAPDARLALGSARGPGRRL-----------------ALHLQVPE 225
G+ R + R + R GS++ RR H + P
Sbjct: 1768 RGLQRSR-SRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSP- 1825
Query: 226 GARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGE 285
ARQ RT ++ R R + P SR PA RA P+ R +
Sbjct: 1826 -ARQESSRTSSRRRRGRSRTPPTSRK--RSRSRTSPAPWKRSRSRA-SPATHRRSRSRTP 1881
Query: 286 RGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLR-----APPGRGASSETMWPT 340
+ R R SP R RS + + A P + R PP S + PT
Sbjct: 1882 LISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPT 1941
Query: 341 ENLSSRRRAPP---QRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESL 397
SR R PP +R R+R P + R R + P T + R ++ P+ S
Sbjct: 1942 TRRRSRSRTPPVTRRRSRSRTPPVTRR-----RSRSRTSPITRRR-SRSRTSPVTRRRSR 1995
Query: 398 SQRS 401
S+ S
Sbjct: 1996 SRTS 1999
Score = 38.9 bits (89), Expect = 0.008
Identities = 69/303 (22%), Positives = 103/303 (33%), Gaps = 37/303 (12%)
Query: 13 LAAGAGQAWGSAGRGRRG----PAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALR 68
L++GA S+ G PAP G +GA +P A +PA +
Sbjct: 2475 LSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQ-QPSALAALQPAKERRSS 2533
Query: 69 GEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSA 128
+ ++ ++++ + SG D + P ++ L R P P+ P
Sbjct: 2534 SSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPA--PKEAVR 2591
Query: 129 DISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQ 188
+ + PAKR+ + S S S S+S S +SS + P
Sbjct: 2592 EGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS- 2650
Query: 189 PLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPG 248
P P A S + P P R PR R R
Sbjct: 2651 -------PAKPGPQALPKPASPKKPP---------PGERRSRSPRKPIDSLRDSR----- 2689
Query: 249 LALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERG-----TEMLRRLRGSPRPNRH 303
+L + V R RP+ PR + S+ G G+RG + RR SPRP RH
Sbjct: 2690 -SLSYSPVERRRPSPQPS--PRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRH 2746
Query: 304 PRS 306
S
Sbjct: 2747 RSS 2749
Score = 30.0 bits (66), Expect = 3.9
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 124 NSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWA 183
+S S+ S PAK P P K P R SR SPR + S + S++
Sbjct: 2638 SSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSR---SPRKPIDSLRDSRSLSYS 2694
Query: 184 GVPRQPLALDLRPT-WKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHR 242
V R+ RP+ +P + + S RG R + P R+ +P RHR
Sbjct: 2695 PVERR------RPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRR-RETPSPRPMRHR 2747
Query: 243 RQRAP 247
R+P
Sbjct: 2748 SSRSP 2752
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 48.5 bits (114), Expect = 1e-05
Identities = 74/313 (23%), Positives = 103/313 (32%), Gaps = 75/313 (23%)
Query: 98 PRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRR---------PTHFYHP 148
P A PP + L PP+ ++Q+A+I Q ++ R+ P+
Sbjct: 674 PEQARPPPPLEDNLFLPPQGGGKPPSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGG 733
Query: 149 DEHKAQPSHVRGSRRPGSPR-SASPGV-GRSWASSWAGV-------PRQPLALDLRPTWK 199
D+ P V RP P SP G S W G PR+PL+
Sbjct: 734 DDKPQVPPRVPIPPRPTRPHVQLSPAPPGEEETSQWPGPASPPRVPPREPLS-------- 785
Query: 200 APDARLALGSARGPGRRLALHLQVPEGARQLGPRT--GAQPSRHRRQRAPGLALVVTGVS 257
P+G+R P G+ P R +PG + T
Sbjct: 786 ------------------------PQGSRTPSPLVPPGSSPLPPRLSSSPGKTMPTTQSF 821
Query: 258 RIRPAHGAPGLPRAPKPSAG-------RGGKEGG--------------ERGTEMLRRLRG 296
P + P + +AP P AG R GK+ ER LR +
Sbjct: 822 ASDPKYATPQVIQAPGPRAGPCILPIVRDGKKVSSTHYYLLPERPSYLERYQRFLREAQS 881
Query: 297 SPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRT 356
P P +P + AA AT+R P + + T N + R PP R
Sbjct: 882 PEEPTPLPVPLLLPPPSTPAPAAPTATVRPMPQAALDPKANFSTNNSNPGARPPPPRATA 941
Query: 357 RAPSIARSLPGSG 369
R P R PG G
Sbjct: 942 RLPQ--RGCPGDG 952
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sapiens]
Length = 1086
Score = 48.5 bits (114), Expect = 1e-05
Identities = 74/313 (23%), Positives = 103/313 (32%), Gaps = 75/313 (23%)
Query: 98 PRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRR---------PTHFYHP 148
P A PP + L PP+ ++Q+A+I Q ++ R+ P+
Sbjct: 752 PEQARPPPPLEDNLFLPPQGGGKPPSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGG 811
Query: 149 DEHKAQPSHVRGSRRPGSPR-SASPGV-GRSWASSWAGV-------PRQPLALDLRPTWK 199
D+ P V RP P SP G S W G PR+PL+
Sbjct: 812 DDKPQVPPRVPIPPRPTRPHVQLSPAPPGEEETSQWPGPASPPRVPPREPLS-------- 863
Query: 200 APDARLALGSARGPGRRLALHLQVPEGARQLGPRT--GAQPSRHRRQRAPGLALVVTGVS 257
P+G+R P G+ P R +PG + T
Sbjct: 864 ------------------------PQGSRTPSPLVPPGSSPLPPRLSSSPGKTMPTTQSF 899
Query: 258 RIRPAHGAPGLPRAPKPSAG-------RGGKEGG--------------ERGTEMLRRLRG 296
P + P + +AP P AG R GK+ ER LR +
Sbjct: 900 ASDPKYATPQVIQAPGPRAGPCILPIVRDGKKVSSTHYYLLPERPSYLERYQRFLREAQS 959
Query: 297 SPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRT 356
P P +P + AA AT+R P + + T N + R PP R
Sbjct: 960 PEEPTPLPVPLLLPPPSTPAPAAPTATVRPMPQAALDPKANFSTNNSNPGARPPPPRATA 1019
Query: 357 RAPSIARSLPGSG 369
R P R PG G
Sbjct: 1020 RLPQ--RGCPGDG 1030
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.8 bits (112), Expect = 2e-05
Identities = 88/364 (24%), Positives = 116/364 (31%), Gaps = 55/364 (15%)
Query: 25 GRGRRGPAPRGQTGTQGVGS---GGSGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAA 81
G+ R P P+GQ G G G G P Q P G + +GE A +G
Sbjct: 25 GQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDG 84
Query: 82 ANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRR 141
G P +P PPG P P N + D K
Sbjct: 85 EPG---------TPGNPGPPGPPG---------PPGPPGLGGNFAAQMAGGFDEKAGG-- 124
Query: 142 PTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLR------ 195
AQ ++G P PR G + G P +P +
Sbjct: 125 -----------AQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR 173
Query: 196 ----PTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGL-- 249
P K D G A PG+ P+GAR P T P + PGL
Sbjct: 174 GPPGPPGKPGDD----GEAGKPGKAGERGPPGPQGARGF-PGTPGLPGVKGHRGYPGLDG 228
Query: 250 ALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPV 309
A G ++ G+PG +P P RG GERG G+ + P GP
Sbjct: 229 AKGEAGAPGVKGESGSPGENGSPGPMGPRGLP--GERGRTGPAGAAGARGNDGQP--GPA 284
Query: 310 PAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSG 369
G A GP AP +G + T + R P + P+ A PG+
Sbjct: 285 GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 344
Query: 370 RLQG 373
+ G
Sbjct: 345 GIPG 348
Score = 43.5 bits (101), Expect = 3e-04
Identities = 98/406 (24%), Positives = 128/406 (31%), Gaps = 78/406 (19%)
Query: 16 GAGQAWGSAG-RGRRGP----APRGQTGTQGV-GSGGSGAGVRPEPCAGQRPAGGK---- 65
GA A G AG G RGP PRG+ GT G G G+ + G + + G
Sbjct: 300 GAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIA 359
Query: 66 ------ALRGEGQAQAAQGYAAANGW-GTVLVSGLV-PQDPRAAPPPGGRQLLLLRPPRW 117
RG Q A G G G ++G Q P+ P P G
Sbjct: 360 GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG----------- 408
Query: 118 VPSCFPNSQSADISQEDRKPAKRRP----------------THFYHPDEHKAQPSHVRGS 161
P +E ++ A+ P + + A P G
Sbjct: 409 -----PQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 463
Query: 162 RRPGS---PRSASPGVGRSWASSWAGVPRQPLALDL--RPTWKAPDARLALGSARGPGRR 216
R P P+ A+ GR G P P A L RP P ++ G + PG
Sbjct: 464 RGPSGLAGPKGANGDPGRP------GEPGLPGARGLTGRPGDAGPQGKV--GPSGAPGED 515
Query: 217 LALHLQVPEGARQL-------GPR-TGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGL 268
P+GAR GP+ +P + + PG G+ + G G
Sbjct: 516 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPG----APGLRGLPGKDGETGA 571
Query: 269 PRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPA-HGVASAAAGPATLRAP 327
P P+ G E GE+G +G P P P G P GV A P +
Sbjct: 572 AGPPGPAGPAG--ERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 629
Query: 328 PGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQG 373
RG E P R P T P A G QG
Sbjct: 630 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 675
Score = 38.5 bits (88), Expect = 0.011
Identities = 89/325 (27%), Positives = 108/325 (33%), Gaps = 71/325 (21%)
Query: 17 AGQAWGSAGRGRRGP----APRGQTGTQGV--GSGGSGAGVRPEPCAGQRPAGGKALRGE 70
AG+ G GP P G+ G +G SG G P P G K G+
Sbjct: 833 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD 892
Query: 71 GQAQAAQGYAAANGW-GTVLVSGLVPQDPRAAPP--PGGRQLLLLRPPRWVPSCFPNSQS 127
A+G G G + GL Q P PG PS P Q
Sbjct: 893 DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPG-------------PSGEPGKQG 939
Query: 128 ADISQEDR-KPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVP 186
A + DR P P P +P R GSP + P GR A+ G
Sbjct: 940 APGASGDRGPPGPVGPPGLTGP---AGEPG------REGSPGADGPP-GRDGAAGVKG-- 987
Query: 187 RQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRA 246
D T A+G+ PG P G+ TG Q R
Sbjct: 988 ------DRGETG-------AVGAPGAPG---------PPGSPGPAGPTGKQGDRGEAGAQ 1025
Query: 247 PGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEG--GERGTEMLRRLRGSPRPNRHP 304
+ +G + R G G PR K AG G+ G G RG L+ L G P
Sbjct: 1026 GPMG--PSGPAGARGIQGPQG-PRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP------ 1076
Query: 305 RSGPVPAHGVASAAAGPATLRAPPG 329
GP G AS AGP+ R PPG
Sbjct: 1077 --GPSGDQG-ASGPAGPSGPRGPPG 1098
Score = 30.4 bits (67), Expect = 3.0
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 13 LAAGAGQAWGSAGRGRRGPAPR-GQTGTQGVG--SGGSGAGVRPEPCAGQRPAGGKALRG 69
L AG+ G GP R G G +G +G GA P P PAG +G
Sbjct: 958 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1017
Query: 70 EGQAQAAQGYAAANG-WGTVLVSGLVPQDPRA----APPPGGRQL 109
+ AQG +G G + G PQ PR A PG R L
Sbjct: 1018 DRGEAGAQGPMGPSGPAGARGIQG--PQGPRGDKGEAGEPGERGL 1060
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 47.8 bits (112), Expect = 2e-05
Identities = 99/394 (25%), Positives = 125/394 (31%), Gaps = 85/394 (21%)
Query: 26 RGRRGP-APRGQTGTQGVGSGGS-GAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAAN 83
RGR GP PRG+ G G G G GA P P G +G + QG
Sbjct: 623 RGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 682
Query: 84 GW----GTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAK 139
G G V + G V D PPG + + PR + +P
Sbjct: 683 GLQGLRGEVGLPG-VKGDKGPMGPPGPKGDQGEKGPRGLTG---------------EPGM 726
Query: 140 RR-PTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTW 198
R P P +G+ P P G + G+ P
Sbjct: 727 RGLPGAVGEPG--------AKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPP--------- 769
Query: 199 KAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSR 258
G + PG+ Q P+G P T +P APG + G S
Sbjct: 770 ---------GPSGDPGKPGLTGPQGPQGL----PGTPGRPGIKGEPGAPGKIVTSEGSSM 816
Query: 259 IRP--------AHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVP 310
+ A G PG P AP P AG G G + + L+G P P PR P P
Sbjct: 817 LTVPGPPGPPGAMGPPGPPGAPGP-AGPAGLPGHQE----VLNLQGPPGPPG-PRGPPGP 870
Query: 311 AHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRR---------APPQRRRTRAPSI 361
+ GP R PPG G P LS+ PP + + P
Sbjct: 871 S------IPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPG 924
Query: 362 ARSLPGSGRLQGLI---FPSTGKNVQRHKSPPLP 392
R G L G S G N+Q PP P
Sbjct: 925 PRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGP 958
Score = 39.7 bits (91), Expect = 0.005
Identities = 85/323 (26%), Positives = 102/323 (31%), Gaps = 54/323 (16%)
Query: 22 GSAG-RGRRGPAP----RGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQAA 76
GS G +G GP RG+ G GV G G P P Q G + L GE +
Sbjct: 671 GSPGPQGPPGPVGLQGLRGEVGLPGV-KGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGL 729
Query: 77 QGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRK 136
G G + P P P G Q L P P S D
Sbjct: 730 PGAVGEPG----AKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPP----GPSGD------- 774
Query: 137 PAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP 196
P K T P P PG+P G SS VP P
Sbjct: 775 PGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEG----SSMLTVPGPPGPPGAMG 830
Query: 197 TWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGV 256
P A G A PG + L+LQ P G GPR PS PG
Sbjct: 831 PPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPP--GPRGPPGPSI---PGPPG-------- 877
Query: 257 SRIRPAHGAPGLPRAPKPS--------AGRGGKEG--GERGTEMLRRLRGSPRPNRHPRS 306
R P G PG P P +G G G G +G + G P P H
Sbjct: 878 PRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQ------GPPGPRGHQGE 931
Query: 307 GPVPAHGVASAAAGPATLRAPPG 329
+P + +++ L+ PPG
Sbjct: 932 QGLPGFSTSGSSSFGLNLQGPPG 954
Score = 32.3 bits (72), Expect = 0.78
Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 26 RGRRGP-APRGQTGTQGVG----SGGSGAGVR----PEPCAGQRPAGGKALRG-EGQAQA 75
+G +GP PRG G QG+ SG S G+ P P Q P G K G G
Sbjct: 917 KGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGI 976
Query: 76 AQGYAAANGWGTVLVSGLVPQDPRAAPPPG 105
G + T+ VSG P P PPG
Sbjct: 977 PSGPSEGGSSSTMYVSG-PPGPPGPPGPPG 1005
Score = 28.9 bits (63), Expect = 8.6
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 28 RRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQR-PAGGKALRGEGQAQAAQG--YAAANG 84
RRG + T G G+G GAG AG R P G G G AA+G YA G
Sbjct: 1302 RRGSSYSSSMSTGGGGAGSLGAGGAFGEAAGDRGPYGTDIGPGGGYGAAAEGGMYAGNGG 1361
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.0 bits (110), Expect = 3e-05
Identities = 86/337 (25%), Positives = 107/337 (31%), Gaps = 85/337 (25%)
Query: 26 RGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGW 85
RG RGPA G G G+ G P P P G L G Q + GY +
Sbjct: 120 RGPRGPA--GPPGRDGI----PGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTG 173
Query: 86 GTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPTHF 145
G + + P PR P P P P F
Sbjct: 174 GISVPGPMGPSGPRGLPGP--------------------------------PGAPGPQGF 201
Query: 146 YHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARL 205
P +P G+ P PR G++ AG P +P R AR
Sbjct: 202 QGPPGEPGEP----GASGPMGPRGPPGPPGKNGDDGEAGKPGRP---GERGPPGPQGARG 254
Query: 206 ALGSARGPGRRLALHLQVPEGAR----------------------QLGPRTGAQPSRHRR 243
G+A PG + +GA+ Q+GPR P R
Sbjct: 255 LPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPR--GLPGERGR 312
Query: 244 QRAPGLALVVTGVSRIRPAHGAPGL--PRAPKPSAGRGGKEG-----GERGTEMLRRLRG 296
APG A G A G PG P P G G +G G RG+E + +RG
Sbjct: 313 PGAPGPA-GARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRG 371
Query: 297 SPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGAS 333
P P P PA G A A P P +GA+
Sbjct: 372 EPGP-------PGPA-GAAGPAGNPGADGQPGAKGAN 400
Score = 45.4 bits (106), Expect = 9e-05
Identities = 116/409 (28%), Positives = 138/409 (33%), Gaps = 81/409 (19%)
Query: 15 AGAGQAWGSAGR-GRRG-PAPRGQTGTQGVGSGGSGAGVRPEPCAGQR----PAGGKALR 68
AG + G AGR G G P +G TG+ G S G P AGQ P G R
Sbjct: 517 AGPKGSPGEAGRPGEAGLPGAKGLTGSPG--SPGPDGKTGPPGPAGQDGRPGPPGPPGAR 574
Query: 69 GEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPG-----GRQLLLLRPP-------- 115
G+ G A G VP P A P G G Q PP
Sbjct: 575 GQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQ----GPPGPAGPAGE 630
Query: 116 --RWVPSCFPNSQS----ADISQEDRKPAKRR-PTHFYHPDEHKAQPSH-------VRGS 161
P+ P Q A E KP ++ P P A+ V+G
Sbjct: 631 RGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGP 690
Query: 162 RRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHL 221
P PR A+ G A AG P AP ++ A G PG R A L
Sbjct: 691 PGPAGPRGANGAPGNDGAKGDAGAP------------GAPGSQGAPGLQGMPGERGAAGL 738
Query: 222 QVPEGAR-QLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAP--KPSAGR 278
P+G R GP+ GA S PG GV + G PG AP K +G
Sbjct: 739 PGPKGDRGDAGPK-GADGS-------PG----KDGVRGLTGPIGPPGPAGAPGDKGESGP 786
Query: 279 GGKEG--GERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRA-----PPGRG 331
G G G RG R G P P +GP A G A P A PPG
Sbjct: 787 SGPAGPTGARGAPGDRGEPGPPGPAGF--AGPPGADGQPGAKGEPGDAGAKGDAGPPGPA 844
Query: 332 ASSETMWPTENLSSRRRAPPQR--RRTRAPSIARSLPGSGRLQGLIFPS 378
+ P N+ AP + R + P A PG+ G PS
Sbjct: 845 GPAGPPGPIGNVG----APGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
Score = 41.6 bits (96), Expect = 0.001
Identities = 91/339 (26%), Positives = 113/339 (33%), Gaps = 71/339 (20%)
Query: 16 GAGQAWGSAGR-GRRGPAPRGQTGTQGVGSGGSGAGVRPEPCA-GQRPAGG----KALRG 69
GA G+AG G +G RG +G G AG + EP + G+ A G + L G
Sbjct: 251 GARGLPGTAGLPGMKGH--RGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPG 308
Query: 70 EGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSAD 129
E A G A A G + P A PPG FP + A
Sbjct: 309 ERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPG----------------FPGAVGA- 351
Query: 130 ISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQP 189
+ +A P RGS P R G + A+ AG P
Sbjct: 352 --------------------KGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP--- 388
Query: 190 LALDLRPTWKAPDARLALGSARG-PGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPG 248
D +P K + + A G PG R P G + GP G P PG
Sbjct: 389 -GADGQPGAKGANGAPGIAGAPGFPGAR------GPSGPQ--GP--GGPPGPKGNSGEPG 437
Query: 249 LALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEG--GERGTEMLRRLRGSPRPNRHPRS 306
G A G PG P + G G+EG G RG L G P P S
Sbjct: 438 ----APGSKGDTGAKGEPG-PVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492
Query: 307 GPVPAHGVASAAAGPATLRAPPG----RGASSETMWPTE 341
P + GPA R PG +G+ E P E
Sbjct: 493 RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGE 531
Score = 39.3 bits (90), Expect = 0.006
Identities = 87/320 (27%), Positives = 103/320 (32%), Gaps = 82/320 (25%)
Query: 17 AGQAWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQAA 76
AG+ G RG GPA G+ G G AG + P A PAG G
Sbjct: 901 AGKEGGKGPRGETGPA--GRPGEVGPPGPPGPAGEKGSPGA-DGPAGAPGTPG------P 951
Query: 77 QGYAAANGWGTVLVSGLVPQDPRAAPP--PGGRQLLLLRPPRWVPSCFPNSQS-ADISQE 133
QG A G V GL Q P PG PS P Q + S E
Sbjct: 952 QGIAGQRG-----VVGLPGQRGERGFPGLPG-------------PSGEPGKQGPSGASGE 993
Query: 134 DRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGV-GRSWASSWAGVPRQPLAL 192
P P P + PG R SPG G + AG P P
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPG--RDGSPGAKGDRGETGPAGPPGAP--- 1048
Query: 193 DLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALV 252
AP A +G A G R P G +GP GA+
Sbjct: 1049 ------GAPGAPGPVGPAGKSGDRGETGPAGPAG--PVGP-VGAR--------------- 1084
Query: 253 VTGVSRIRPAHGAPGLPRAPKPSAGRGGKEG--GERGTEMLRRLRGSPRPNRHP-RSGPV 309
P P+ P+ G G++G G +G L+G P P P GP
Sbjct: 1085 ------------GPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP- 1131
Query: 310 PAHGVASAAAGPATLRAPPG 329
S A+GPA R PPG
Sbjct: 1132 ------SGASGPAGPRGPPG 1145
Score = 30.0 bits (66), Expect = 3.9
Identities = 37/137 (27%), Positives = 44/137 (32%), Gaps = 34/137 (24%)
Query: 264 GAPGLPRAPKPSA-----GRGGKEG------------------GERGTEMLRRLRGSP-R 299
G PGLP P P G GG G G R L G P
Sbjct: 136 GQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGA 195
Query: 300 PNRHPRSGPV--PAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTR 357
P GP P AS GP PPG+ ++ + + P R
Sbjct: 196 PGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNG--------DDGEAGKPGRPGERGPP 247
Query: 358 APSIARSLPGSGRLQGL 374
P AR LPG+ L G+
Sbjct: 248 GPQGARGLPGTAGLPGM 264
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 47.0 bits (110), Expect = 3e-05
Identities = 89/367 (24%), Positives = 113/367 (30%), Gaps = 79/367 (21%)
Query: 17 AGQAWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQAA 76
+G G+AG G PA G GA P P RP GG
Sbjct: 64 SGSPAGAAGAGPAAPA-----------EGAPGAAPEPPPAGRARPGGG----------GP 102
Query: 77 QGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRK 136
Q + ++ +G P + PPP G SC P +A ++ +
Sbjct: 103 QRPGPPSPRRPLVPAGPAPPAAKLRPPPEGS----------AGSCAPVPAAAAVA-AGPE 151
Query: 137 PAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP 196
PA P A P+ + PG PG G P +P
Sbjct: 152 PAPAGPA-------KPAGPAALAARAGPGPGPGPGPGPGPG--------PGKPAGPGAAQ 196
Query: 197 TWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGV 256
T A L A P L V G L P + APG +
Sbjct: 197 TLNGSAALLNSHHAAAPAVSL-----VNNGPAALLPLP--------KPAAPGTVIQTPPF 243
Query: 257 --SRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPR--PNRHPRSGPV--- 309
+ PA AP P AP P+A L R G P P P P
Sbjct: 244 VGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAA 303
Query: 310 -------PAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIA 362
A A AA GPA + PG GA++ P S P+R AP A
Sbjct: 304 QNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAES-----PKRVVQAAPPAA 358
Query: 363 RSLPGSG 369
++L SG
Sbjct: 359 QTLAASG 365
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 46.6 bits (109), Expect = 4e-05
Identities = 106/412 (25%), Positives = 137/412 (33%), Gaps = 87/412 (21%)
Query: 16 GAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQA 75
GAG G G G G G G G G GGS G P G AG LR
Sbjct: 64 GAGAGGGGGGFGGGG----GFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDN 119
Query: 76 AQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRW-VPSCFPNSQSADIS-QE 133
G + +L G + PP G P R+ VPS P +S Q
Sbjct: 120 DSGGSRP----PLLPPGGRSTSAKPFSPPSG-------PGRFPVPS--PGHRSGPPEPQR 166
Query: 134 DRKPAKR-----RPTHFYHPDEHKAQP----SHVRGSRR-PGSPRSASPGV-------GR 176
+R P R +P P +P H RGS PG PR SPG R
Sbjct: 167 NRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNR 226
Query: 177 SWASSWAGVPRQPLA----LDLRPTWKAPDARLALGSARGP-----GRRLALHLQV--PE 225
A + + PL+ RP +R AL P G R ++H + P
Sbjct: 227 GTALGGGSIRQSPLSSSSPFSNRPPLPPTPSR-ALDDKPPPPPPPVGNRPSIHREAVPPP 285
Query: 226 GARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGE 285
+ P + P +AP P PG P P P + G E
Sbjct: 286 PPQNNKPPVPSTPRPSASSQAPPPP----------PPPSRPGPP--PLPPSSSGNDETPR 333
Query: 286 RGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSS 345
L +P RSGP+P + P +R PPGR
Sbjct: 334 LPQRNLSLSSSTPPLPSPGRSGPLPP---PPSERPPPPVRDPPGRSGP------------ 378
Query: 346 RRRAPPQRRRTRAPSIARSLPGSGRL---QGLIFPSTGKNVQRHKSPPLPSE 394
PP +R S +R+LP + +L G+ P +G PPLP +
Sbjct: 379 ---LPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPR------PPLPPD 421
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 46.6 bits (109), Expect = 4e-05
Identities = 106/412 (25%), Positives = 137/412 (33%), Gaps = 87/412 (21%)
Query: 16 GAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQA 75
GAG G G G G G G G G GGS G P G AG LR
Sbjct: 64 GAGAGGGGGGFGGGG----GFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDN 119
Query: 76 AQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRW-VPSCFPNSQSADIS-QE 133
G + +L G + PP G P R+ VPS P +S Q
Sbjct: 120 DSGGSRP----PLLPPGGRSTSAKPFSPPSG-------PGRFPVPS--PGHRSGPPEPQR 166
Query: 134 DRKPAKR-----RPTHFYHPDEHKAQP----SHVRGSRR-PGSPRSASPGV-------GR 176
+R P R +P P +P H RGS PG PR SPG R
Sbjct: 167 NRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNR 226
Query: 177 SWASSWAGVPRQPLA----LDLRPTWKAPDARLALGSARGP-----GRRLALHLQV--PE 225
A + + PL+ RP +R AL P G R ++H + P
Sbjct: 227 GTALGGGSIRQSPLSSSSPFSNRPPLPPTPSR-ALDDKPPPPPPPVGNRPSIHREAVPPP 285
Query: 226 GARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGE 285
+ P + P +AP P PG P P P + G E
Sbjct: 286 PPQNNKPPVPSTPRPSASSQAPPPP----------PPPSRPGPP--PLPPSSSGNDETPR 333
Query: 286 RGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSS 345
L +P RSGP+P + P +R PPGR
Sbjct: 334 LPQRNLSLSSSTPPLPSPGRSGPLPP---PPSERPPPPVRDPPGRSGP------------ 378
Query: 346 RRRAPPQRRRTRAPSIARSLPGSGRL---QGLIFPSTGKNVQRHKSPPLPSE 394
PP +R S +R+LP + +L G+ P +G PPLP +
Sbjct: 379 ---LPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPR------PPLPPD 421
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.8 bits (107), Expect = 7e-05
Identities = 91/382 (23%), Positives = 119/382 (31%), Gaps = 68/382 (17%)
Query: 7 CSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGS---GGSGAGVRPEPCAGQRPAG 63
C DL A+G P P+GQ G G G G P Q P G
Sbjct: 89 CPTDLATASGQ-------------PGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRG 135
Query: 64 GKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFP 123
+ +GE A +G G P +P PPG P P
Sbjct: 136 DRGDKGEKGAPGPRGRDGEPG---------TPGNPGPPGPPG---------PPGPPGLGG 177
Query: 124 NSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWA 183
N + D K AQ ++G P PR G +
Sbjct: 178 NFAAQMAGGFDEKAGG-------------AQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 224
Query: 184 GVPRQPLALDLR----------PTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPR 233
G P +P + P K D G A PG+ P+GAR P
Sbjct: 225 GNPGEPGEPGVSGPMGPRGPPGPPGKPGDD----GEAGKPGKAGERGPPGPQGARGF-PG 279
Query: 234 TGAQPSRHRRQRAPGL--ALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEML 291
T P + PGL A G ++ G+PG +P P RG GERG
Sbjct: 280 TPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP--GERGRTGP 337
Query: 292 RRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPP 351
G+ + P GP G A GP AP +G + T + R P
Sbjct: 338 AGAAGARGNDGQP--GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 395
Query: 352 QRRRTRAPSIARSLPGSGRLQG 373
+ P+ A PG+ + G
Sbjct: 396 GTPGSPGPAGASGNPGTDGIPG 417
Score = 43.5 bits (101), Expect = 3e-04
Identities = 98/406 (24%), Positives = 128/406 (31%), Gaps = 78/406 (19%)
Query: 16 GAGQAWGSAG-RGRRGP----APRGQTGTQGV-GSGGSGAGVRPEPCAGQRPAGGK---- 65
GA A G AG G RGP PRG+ GT G G G+ + G + + G
Sbjct: 369 GAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIA 428
Query: 66 ------ALRGEGQAQAAQGYAAANGW-GTVLVSGLV-PQDPRAAPPPGGRQLLLLRPPRW 117
RG Q A G G G ++G Q P+ P P G
Sbjct: 429 GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG----------- 477
Query: 118 VPSCFPNSQSADISQEDRKPAKRRP----------------THFYHPDEHKAQPSHVRGS 161
P +E ++ A+ P + + A P G
Sbjct: 478 -----PQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 532
Query: 162 RRPGS---PRSASPGVGRSWASSWAGVPRQPLALDL--RPTWKAPDARLALGSARGPGRR 216
R P P+ A+ GR G P P A L RP P ++ G + PG
Sbjct: 533 RGPSGLAGPKGANGDPGRP------GEPGLPGARGLTGRPGDAGPQGKV--GPSGAPGED 584
Query: 217 LALHLQVPEGARQL-------GPR-TGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGL 268
P+GAR GP+ +P + + PG G+ + G G
Sbjct: 585 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPG----APGLRGLPGKDGETGA 640
Query: 269 PRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPA-HGVASAAAGPATLRAP 327
P P+ G E GE+G +G P P P G P GV A P +
Sbjct: 641 AGPPGPAGPAG--ERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 698
Query: 328 PGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQG 373
RG E P R P T P A G QG
Sbjct: 699 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 744
Score = 38.5 bits (88), Expect = 0.011
Identities = 89/325 (27%), Positives = 108/325 (33%), Gaps = 71/325 (21%)
Query: 17 AGQAWGSAGRGRRGP----APRGQTGTQGV--GSGGSGAGVRPEPCAGQRPAGGKALRGE 70
AG+ G GP P G+ G +G SG G P P G K G+
Sbjct: 902 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD 961
Query: 71 GQAQAAQGYAAANGW-GTVLVSGLVPQDPRAAPP--PGGRQLLLLRPPRWVPSCFPNSQS 127
A+G G G + GL Q P PG PS P Q
Sbjct: 962 DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPG-------------PSGEPGKQG 1008
Query: 128 ADISQEDR-KPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVP 186
A + DR P P P +P R GSP + P GR A+ G
Sbjct: 1009 APGASGDRGPPGPVGPPGLTGP---AGEPG------REGSPGADGPP-GRDGAAGVKG-- 1056
Query: 187 RQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRA 246
D T A+G+ PG P G+ TG Q R
Sbjct: 1057 ------DRGETG-------AVGAPGAPG---------PPGSPGPAGPTGKQGDRGEAGAQ 1094
Query: 247 PGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEG--GERGTEMLRRLRGSPRPNRHP 304
+ +G + R G G PR K AG G+ G G RG L+ L G P
Sbjct: 1095 GPMG--PSGPAGARGIQGPQG-PRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP------ 1145
Query: 305 RSGPVPAHGVASAAAGPATLRAPPG 329
GP G AS AGP+ R PPG
Sbjct: 1146 --GPSGDQG-ASGPAGPSGPRGPPG 1167
Score = 30.4 bits (67), Expect = 3.0
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 13 LAAGAGQAWGSAGRGRRGPAPR-GQTGTQGVG--SGGSGAGVRPEPCAGQRPAGGKALRG 69
L AG+ G GP R G G +G +G GA P P PAG +G
Sbjct: 1027 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1086
Query: 70 EGQAQAAQGYAAANG-WGTVLVSGLVPQDPRA----APPPGGRQL 109
+ AQG +G G + G PQ PR A PG R L
Sbjct: 1087 DRGEAGAQGPMGPSGPAGARGIQG--PQGPRGDKGEAGEPGERGL 1129
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 45.4 bits (106), Expect = 9e-05
Identities = 113/445 (25%), Positives = 148/445 (33%), Gaps = 80/445 (17%)
Query: 2 RGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTG---TQGVGSGGSGAGVRPEPCAG 58
R RA L A A G+ G GPAP TQ SGG G G P AG
Sbjct: 109 RSRRAAGPGLDCAGSAPAPSGAQSCG--GPAPASALRRPLTQWDASGGGGRGSHSGPRAG 166
Query: 59 QRPAGGKALRG----------------EGQAQAAQGYAAANGWGTVLVSGLVPQDPRA-- 100
P GG++ R +G ++ QG ++ WG SG P PRA
Sbjct: 167 -TPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSS--WGG---SG-TPPPPRALW 219
Query: 101 ---APPPGGRQLLLLRPPRWVP-SCFPNSQ--SADISQEDRKPAKRRPTHFYHPDEHKAQ 154
G R + R P S P S + + R + F P H
Sbjct: 220 NRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTS 279
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPG 214
G R G S P + S A+ + +P +A P+ A RL G +
Sbjct: 280 -----GGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTV 334
Query: 215 RRLALHLQV-------PEGARQLGPRTGAQP-SRHRRQRAPGLALVVTGVSRIRPAHGAP 266
+ A+ + P R L P G++ +R R A + SR RP AP
Sbjct: 335 LKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAP 394
Query: 267 GLPRAPKPSAGRGGKEGGER--------------GTEMLRRLRGSPRPNRHPRSGPVPAH 312
P G GG G + GT L RGS P VP
Sbjct: 395 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHF 454
Query: 313 GVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRA-PSIARSLP----- 366
S+ A + R+P R L + R + PQ R A P IA P
Sbjct: 455 RPLSSPAPQSPPRSPSVRAFG-------PRLGAGRLSCPQAPRAAALPGIAVLAPSPAHD 507
Query: 367 -GSGRLQGL---IFPSTGKNVQRHK 387
G R +G P G+ +R K
Sbjct: 508 WGGQRCEGCGGGSQPFAGRRAERGK 532
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 45.4 bits (106), Expect = 9e-05
Identities = 113/445 (25%), Positives = 148/445 (33%), Gaps = 80/445 (17%)
Query: 2 RGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTG---TQGVGSGGSGAGVRPEPCAG 58
R RA L A A G+ G GPAP TQ SGG G G P AG
Sbjct: 109 RSRRAAGPGLDCAGSAPAPSGAQSCG--GPAPASALRRPLTQWDASGGGGRGSHSGPRAG 166
Query: 59 QRPAGGKALRG----------------EGQAQAAQGYAAANGWGTVLVSGLVPQDPRA-- 100
P GG++ R +G ++ QG ++ WG SG P PRA
Sbjct: 167 -TPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSS--WGG---SG-TPPPPRALW 219
Query: 101 ---APPPGGRQLLLLRPPRWVP-SCFPNSQ--SADISQEDRKPAKRRPTHFYHPDEHKAQ 154
G R + R P S P S + + R + F P H
Sbjct: 220 NRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTS 279
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPG 214
G R G S P + S A+ + +P +A P+ A RL G +
Sbjct: 280 -----GGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTV 334
Query: 215 RRLALHLQV-------PEGARQLGPRTGAQP-SRHRRQRAPGLALVVTGVSRIRPAHGAP 266
+ A+ + P R L P G++ +R R A + SR RP AP
Sbjct: 335 LKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAP 394
Query: 267 GLPRAPKPSAGRGGKEGGER--------------GTEMLRRLRGSPRPNRHPRSGPVPAH 312
P G GG G + GT L RGS P VP
Sbjct: 395 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHF 454
Query: 313 GVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRA-PSIARSLP----- 366
S+ A + R+P R L + R + PQ R A P IA P
Sbjct: 455 RPLSSPAPQSPPRSPSVRAFG-------PRLGAGRLSCPQAPRAAALPGIAVLAPSPAHD 507
Query: 367 -GSGRLQGL---IFPSTGKNVQRHK 387
G R +G P G+ +R K
Sbjct: 508 WGGQRCEGCGGGSQPFAGRRAERGK 532
>gi|13129104 coiled-coil domain containing 86 [Homo sapiens]
Length = 360
Score = 45.1 bits (105), Expect = 1e-04
Identities = 57/231 (24%), Positives = 90/231 (38%), Gaps = 37/231 (16%)
Query: 156 SHVRGSRRPGSPRS---ASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARG 212
S+ +R PGSP S A G + G PR L P+ A
Sbjct: 37 SNPEETREPGSPPSVQRAGLGSPERPPKTSPGSPRLQQGAGLESPQGQPEP-----GAAS 91
Query: 213 PGRRLALHLQVPEGARQLGP---RTGAQPSRHRRQRAPGLALVVTGVSRIR-------PA 262
P R+ LHL+ P+ + P R +PS + + ++ + +++ + P
Sbjct: 92 PQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCSQDQGVLASELAQNKEELTPGAPQ 151
Query: 263 HGAPGLPRAPKPSAGRG--GKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAG 320
H P +P +P+P G+ G E + E+ R GSPR +H S P PA + G
Sbjct: 152 HQLPPVPGSPEPYPGQQAPGPEPSQPLLELTPRAPGSPR-GQHEPSKPPPAGETVTGGFG 210
Query: 321 PATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRL 371
A +G+SS+ A + + P I + P SGR+
Sbjct: 211 -----AKKRKGSSSQA-----------PASKKLNKEELPVIPKGKPKSGRV 245
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 44.7 bits (104), Expect = 2e-04
Identities = 48/158 (30%), Positives = 56/158 (35%), Gaps = 37/158 (23%)
Query: 219 LHLQVP----EGARQLGPRTGAQPSRHRRQ------RAPGLALVVTGVSRIRPAHGAPGL 268
L LQVP EG L + +P + +RQ R+P A V +R P
Sbjct: 35 LQLQVPLSGAEGKELLAAQAAHRPRQQQRQQQRPRPRSPDPAARGQHVPELRSRKPGPAA 94
Query: 269 ---------------PRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHG 313
P P P G GGER E R PRP PR P+ A G
Sbjct: 95 RTEEGGDVTGRPWQPPLLPPPGVPTPGNRGGERRGER----RAPPRPAGAPRGSPMAARG 150
Query: 314 VASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPP 351
A A P L G GA P S+R APP
Sbjct: 151 RARGEAEPPAL----GAGACDSRNQP----DSQRTAPP 180
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 44.3 bits (103), Expect = 2e-04
Identities = 69/266 (25%), Positives = 86/266 (32%), Gaps = 48/266 (18%)
Query: 94 VPQDPRAAPPPGGRQLL-------LLRPPRWVPSCFPNSQSADISQED------RKPAKR 140
+P P A PPP L L PP P P S SA + + P
Sbjct: 776 LPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVL 835
Query: 141 RPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKA 200
P A P+ ++ RRP +P + G + A P P + T
Sbjct: 836 AAPLLQVPPSPPASPT-LQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSG 894
Query: 201 PDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQ-----PSRHRRQRAPGLALVVTG 255
PD SA L + PEG P A+ P+ R AP LA
Sbjct: 895 PDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAF---- 950
Query: 256 VSRIRPAHGAPGLPRAPKPSAGRGGKEG-----GERGTEMLRRLRGSPRPNRHPRSGPVP 310
GAPG P P+ G G +G G E G+ P GP P
Sbjct: 951 -------RGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDP------GPSP 997
Query: 311 AHGVASAAAGPATLRAPPGRGASSET 336
AAAG G GASS +
Sbjct: 998 GTSGGKAAAG-------AGAGASSRS 1016
Score = 37.7 bits (86), Expect = 0.019
Identities = 48/165 (29%), Positives = 64/165 (38%), Gaps = 30/165 (18%)
Query: 245 RAPGLALVVTGVSRIRPAHGAPGLPRAPKPSA-------GRGGKEGGERGTEMLRRLRGS 297
RAPGL RP PG PR P P G G G + E + G+
Sbjct: 20 RAPGLLTP-------RP----PGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGA 68
Query: 298 PRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTR 357
P PR+GP + G +S PA+ GRG E P +N S + P R
Sbjct: 69 TIPESAPRAGPTRSAGTSS--RNPASRPPASGRG---ERAPPAKNTSPGPVSSPGR---- 119
Query: 358 APSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
+ + PG +GL S + V R K+ P +LS +R
Sbjct: 120 --ASGTTRPGPLGQKGLRI-SAEETVARGKATEAPKRSALSAGAR 161
Score = 32.0 bits (71), Expect = 1.0
Identities = 88/400 (22%), Positives = 139/400 (34%), Gaps = 47/400 (11%)
Query: 13 LAAGAGQAWGSAGRGRRGPAPRGQTGTQG----VGSGGSGAGVRPEPCAGQRP-AGGKAL 67
+A + A G R P+ R + T+G V S + P P A +RP AGG
Sbjct: 176 MARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQ 235
Query: 68 RGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVP------SC 121
R ++ ++ ++ + + P+ P P + L LRPP+ P
Sbjct: 236 RPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPA 295
Query: 122 FPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASS 181
S+ ++ K RP P ++ A P + P SP A+P
Sbjct: 296 LGPLSSSPLATPSPSGTKARPV---PPPDNAATP---LPATLPPSPPLATP--------- 340
Query: 182 WAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRH 241
+P P + P+ + + A ++ P +Q P + + P
Sbjct: 341 ---LPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTS 397
Query: 242 RRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPN 301
+AP L ++ + + + G+P L A R T+ L RP
Sbjct: 398 PSLQAPPSPLALSSL-QATTSLGSPTL------QATHSFLTMSPRQTQ--ASLTSPSRPA 448
Query: 302 RHPRSGPVPAHGVASAAAGP--ATLRAPPGRGASSE-TMWPTENLSSRRRAPPQRRRTRA 358
P P P S A P T +P SS T+ P + LSS PQ A
Sbjct: 449 STPPDSP-PLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQ-----A 502
Query: 359 PSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLS 398
P + +P L PS +PPL + SL+
Sbjct: 503 PLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLA 542
Score = 30.0 bits (66), Expect = 3.9
Identities = 75/308 (24%), Positives = 94/308 (30%), Gaps = 58/308 (18%)
Query: 95 PQDPRAAPPPGGRQLLLLRPPRWVPS---------------CFPNSQSADISQEDRKPAK 139
P P A PPP L L P + PS PN+ + + Q P
Sbjct: 610 PLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPP 669
Query: 140 RRPTH--FYHPDEHKAQPSHVRGSRRPGS----PRSASPGVGRSWASSWAGVP------- 186
P F P PS S+ P S P P S S + P
Sbjct: 670 SPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPP 729
Query: 187 --RQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQ 244
PL + P P + A R P A LQVP P + P
Sbjct: 730 LAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMS---PLAKPPP 786
Query: 245 RAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHP 304
+AP PA P L P P A G+ L SP P
Sbjct: 787 QAP-------------PALATPPLQALPSPPASFPGQAPFSPSAS----LPMSPLATPPP 829
Query: 305 RSGPVPAHGVASAAAGP---ATLRA---PPGRGASSETMWPTENLSSRRRAPPQRRRTRA 358
++ PV A + P TL+A PP G + P L+ PP +R+
Sbjct: 830 QAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP--PSRS 887
Query: 359 PSIARSLP 366
PS S P
Sbjct: 888 PSSTLSGP 895
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 43.9 bits (102), Expect = 3e-04
Identities = 65/271 (23%), Positives = 92/271 (33%), Gaps = 49/271 (18%)
Query: 117 WVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGR 176
W+ + + S + P P F+HP +Q +G+ P+ A G
Sbjct: 1901 WLKHDSSQAPPSPFSPDASSPLLPMPAEFFHPAVSASQKGPEKGTGTGTLPKIALQG--- 1957
Query: 177 SWASSWAGVPR-----------QPLALDLRPTWKAPDARLALGS----ARGPGRRLALHL 221
SWAS + PR +LD P+ A + L + P R L
Sbjct: 1958 SWASLRS--PRVNCTLLRQATGSDTSLDASPSSSAGSLQTTLEDSLTLSDSPRRALGPPA 2015
Query: 222 QVPEGARQLGPRTGAQPSRHRRQRAPGLALV-VTGVSRIRPAHGAPGLPRA--------- 271
P GPR G P+ RR G L + G+ + +H + G
Sbjct: 2016 PAP------GPRAGLSPAARRRLSLRGRGLFSLRGLRAHQRSHSSGGSTSPGCTHHDSMD 2069
Query: 272 PKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLR-APPGR 330
P GRGG GG G+E L + P PA G+ A +T A PGR
Sbjct: 2070 PSDEEGRGGAGGGGAGSEHSETLSSLSLTSLFCPPPPPPAPGLTPARKFSSTSSLAAPGR 2129
Query: 331 --------GASSETMWPTENLSSRRRAPPQR 353
G + W + R + PP R
Sbjct: 2130 PHAAALAHGLARSPSWAAD----RSKDPPGR 2156
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 43.9 bits (102), Expect = 3e-04
Identities = 65/271 (23%), Positives = 92/271 (33%), Gaps = 49/271 (18%)
Query: 117 WVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGR 176
W+ + + S + P P F+HP +Q +G+ P+ A G
Sbjct: 1936 WLKHDSSQAPPSPFSPDASSPLLPMPAEFFHPAVSASQKGPEKGTGTGTLPKIALQG--- 1992
Query: 177 SWASSWAGVPR-----------QPLALDLRPTWKAPDARLALGS----ARGPGRRLALHL 221
SWAS + PR +LD P+ A + L + P R L
Sbjct: 1993 SWASLRS--PRVNCTLLRQATGSDTSLDASPSSSAGSLQTTLEDSLTLSDSPRRALGPPA 2050
Query: 222 QVPEGARQLGPRTGAQPSRHRRQRAPGLALV-VTGVSRIRPAHGAPGLPRA--------- 271
P GPR G P+ RR G L + G+ + +H + G
Sbjct: 2051 PAP------GPRAGLSPAARRRLSLRGRGLFSLRGLRAHQRSHSSGGSTSPGCTHHDSMD 2104
Query: 272 PKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLR-APPGR 330
P GRGG GG G+E L + P PA G+ A +T A PGR
Sbjct: 2105 PSDEEGRGGAGGGGAGSEHSETLSSLSLTSLFCPPPPPPAPGLTPARKFSSTSSLAAPGR 2164
Query: 331 --------GASSETMWPTENLSSRRRAPPQR 353
G + W + R + PP R
Sbjct: 2165 PHAAALAHGLARSPSWAAD----RSKDPPGR 2191
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 43.5 bits (101), Expect = 3e-04
Identities = 86/322 (26%), Positives = 106/322 (32%), Gaps = 63/322 (19%)
Query: 13 LAAGAGQAWGSAGRGRRG-PAPRGQTGTQGV-GSGGSGAGVRPEPCAGQRPAGGKALRGE 70
L AG RG G P P G GT G GS G+ V P G A G+ RGE
Sbjct: 313 LPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ--RGE 370
Query: 71 GQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADI 130
QG+A A G P P PGG+ + P +P P A
Sbjct: 371 ---PGPQGHAGAQG---------PPGPPGINGSPGGKGEM---GPAGIPGA-PGLMGA-- 412
Query: 131 SQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPL 190
R P P P G+ PG A G AG+P P
Sbjct: 413 ---------RGPPG---PAGANGAPGLRGGAGEPGK-NGAKGEPGPRGERGEAGIPGVPG 459
Query: 191 ALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLA 250
A +P A G G R A + P G + G R
Sbjct: 460 AKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGER---------- 509
Query: 251 LVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSP-RPNRHPRSGPV 309
GAPG P P+ +AG G++G G M R + GSP P + GP
Sbjct: 510 -------------GAPG-PAGPRGAAGEPGRDGVPGGPGM-RGMPGSPGGPGSDGKPGPP 554
Query: 310 PAHGVAS--AAAGPATLRAPPG 329
+ G + GP+ R PG
Sbjct: 555 GSQGESGRPGPPGPSGPRGQPG 576
Score = 42.4 bits (98), Expect = 8e-04
Identities = 93/373 (24%), Positives = 123/373 (32%), Gaps = 60/373 (16%)
Query: 46 GSGAGVRPEP-CAGQRPAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPP 104
G V P+P A RP G+ +G G NG +P P + P
Sbjct: 82 GECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNG------DPGIPGQPGSPGSP 135
Query: 105 GGRQLLLLRPPRWVPSC--FPNSQSADISQEDRKP--AKRRPTHFYHPDEHKAQPSHVRG 160
G PP SC P + S D K A + P P
Sbjct: 136 G--------PPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGT 187
Query: 161 SRRPGSPRSASPGV----GRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRR 216
S PGSP SPG G + +G P P A+ P+ A G + PGR
Sbjct: 188 SGHPGSP--GSPGYQGPPGEPGQAGPSGPPGPPGAIG--PSGPAGKD----GESGRPGRP 239
Query: 217 LALHLQVPEGARQLGPRTGAQPSRHRR-----------QRAPGLALVVTGVSRIRPAHGA 265
L P G + G + R APGL G + + +GA
Sbjct: 240 GERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLK----GENGLPGENGA 295
Query: 266 PGLPRAPKPSAGRGGKEG-----GERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAG 320
PG P P+ + G G+ G G RG + R G P P P + P A G
Sbjct: 296 PG-PMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVG 354
Query: 321 PATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTG 380
PA +P GA + P + + PP P I S G G + P
Sbjct: 355 PA--GSPGSNGAPGQRGEPGPQGHAGAQGPP-----GPPGINGSPGGKGEMGPAGIPG-A 406
Query: 381 KNVQRHKSPPLPS 393
+ + PP P+
Sbjct: 407 PGLMGARGPPGPA 419
Score = 40.8 bits (94), Expect = 0.002
Identities = 92/347 (26%), Positives = 112/347 (32%), Gaps = 50/347 (14%)
Query: 17 AGQAWGSAGRGRRG-PAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQA 75
AG + G+RG P P+G G QG G G P PAG G A+
Sbjct: 356 AGSPGSNGAPGQRGEPGPQGHAGAQGP-PGPPGINGSPGGKGEMGPAGIPGAPGLMGARG 414
Query: 76 AQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSAD------ 129
G A ANG + P A PG R R +P P ++ D
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE---RGEAGIPGV-PGAKGEDGKDGSP 470
Query: 130 ----------ISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWA 179
+ E P R P K P+ RG+ P PR A+ GR
Sbjct: 471 GEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKG-PAGERGAPGPAGPRGAAGEPGRD-- 527
Query: 180 SSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPR----TG 235
GVP P +R +P + G PG + P G GPR
Sbjct: 528 ----GVPGGP---GMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPS--GPRGQPGVM 578
Query: 236 AQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGL-----PRAPKPSAGRGGKEG-----GE 285
P APG G P G PG P+ P G GG +G G
Sbjct: 579 GFPGPKGNDGAPGKNGERGGPGGPGP-QGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGP 637
Query: 286 RGTEMLRRLRGSPRPNRHP-RSGPVPAHGVASAAAGPATLRAPPGRG 331
+G + L G P N P GP G A G AP RG
Sbjct: 638 QGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERG 684
Score = 40.8 bits (94), Expect = 0.002
Identities = 90/366 (24%), Positives = 115/366 (31%), Gaps = 59/366 (16%)
Query: 14 AAGAGQAWGSAGR--GRRGPAPRGQTGTQGVGSGGSGA----GVRPE--PCAGQRPAGGK 65
AAG G G G P P+G G G G G G G R P PAG
Sbjct: 718 AAGTPGLQGMPGERGGLGSPGPKGDKGEPG-GPGADGVPGKDGPRGPTGPIGPPGPAGQP 776
Query: 66 ALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNS 125
+GEG A G A G P + PPG P+ FP +
Sbjct: 777 GDKGEGGAPGLPGIAGPRG---------SPGERGETGPPG-------------PAGFPGA 814
Query: 126 --QSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWA 183
Q+ + + + A P A P G P P+ G A
Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPG--VAGPPGGSGPAGPPGPQGVKGERGSPGGPGAA 872
Query: 184 GVPRQ-----PLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGA-- 236
G P P + P P GP A + P GP+ A
Sbjct: 873 GFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGP----AGNTGAPGSPGVSGPKGDAGQ 928
Query: 237 -----QPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEG--GERGTE 289
P APG L + G++ R G PG+P P+ S G G +G G+ G
Sbjct: 929 PGEKGSPGAQGPPGAPG-PLGIAGITGARGLAGPPGMP-GPRGSPGPQGVKGESGKPGAN 986
Query: 290 MLRRLRGSPRPNRHP----RSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSS 345
L RG P P P +G G + P +P G+G E P +
Sbjct: 987 GLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAP 1046
Query: 346 RRRAPP 351
PP
Sbjct: 1047 GHPGPP 1052
Score = 39.3 bits (90), Expect = 0.006
Identities = 98/368 (26%), Positives = 121/368 (32%), Gaps = 80/368 (21%)
Query: 22 GSAG-RGRRG-PAPRGQTGTQGVG--SGGSGAGVRPEPCAG---------QRPAGGKALR 68
G+AG G RG P P G G G SG G P P P G
Sbjct: 870 GAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQP 929
Query: 69 GEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPP--PGGRQLLLLRPPRWVPSCFPNSQ 126
GE + AQG A G + ++G+ A PP PG P P Q
Sbjct: 930 GEKGSPGAQGPPGAPG--PLGIAGITGARGLAGPPGMPG-------------PRGSPGPQ 974
Query: 127 SADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVP 186
+ E KP + P + P + PG R +PG G+P
Sbjct: 975 G--VKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPG--RDGNPGSD--------GLP 1022
Query: 187 RQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRA 246
+ D P K R GS PG P GP A S R +
Sbjct: 1023 GR----DGSPGGKGD--RGENGSPGAPG--------APGHPGPPGPVGPAGKSGDRGESG 1068
Query: 247 PGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSP-RPNRHPR 305
P G + R GAPG P+ P+ G E GERG ++ RG P P
Sbjct: 1069 PAGPAGAPGPAGSR---GAPG-PQGPRGDKG----ETGERGAAGIKGHRGFPGNPGAPGS 1120
Query: 306 SGPVPAHGVASAAAGPATLR------APPGRGASSETMWPTENLSSRRRAPPQRRRTRAP 359
GP G A + GPA R PPG+ +S P PP R R
Sbjct: 1121 PGPAGQQG-AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPI--------GPPGPRGNRGE 1171
Query: 360 SIARSLPG 367
+ PG
Sbjct: 1172 RGSEGSPG 1179
>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 43.5 bits (101), Expect = 3e-04
Identities = 51/184 (27%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 160 GSRRPGSPRSASPGVGRSWASSWAGVPRQPLAL--DLRPTWKAPDARLALGSARGPGRRL 217
G+ +PR A P +GR WA+ A P + L LR + D L + P +
Sbjct: 69 GNAESPAPRRARPDLGRPWATRSAASPHSKMWLGSHLRGGEMSGDPHTDLPA--HPAQTT 126
Query: 218 ALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAG 277
L++P Q P ++P AP RPAH ++P
Sbjct: 127 NPELELPADPAQPDPAPLSRP-------APP-----------RPAH------QSPAEEGP 162
Query: 278 RGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETM 337
RG GG R T R +G P PR+ P SAA A++R P GA+
Sbjct: 163 RGAAGGGPR-TPPAGRTQGQSGPRESPRASP------GSAAPAMASVRGPARDGATRSEP 215
Query: 338 WPTE 341
TE
Sbjct: 216 HATE 219
Score = 31.6 bits (70), Expect = 1.3
Identities = 44/168 (26%), Positives = 54/168 (32%), Gaps = 34/168 (20%)
Query: 98 PRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPT--------HFYHPD 149
PR AP P LL LRP P + A + E P + RP P
Sbjct: 47 PRRAPEP---PLLTLRPR-------PGTLRAPGNAESPAPRRARPDLGRPWATRSAASPH 96
Query: 150 EHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGS 209
SH+RG G P + P + +P P D P + R A S
Sbjct: 97 SKMWLGSHLRGGEMSGDPHTDLPAHPAQTTNPELELPADPAQPDPAPLSRPAPPRPAHQS 156
Query: 210 ARGPGRRLALHLQVPEGARQLGPRT-------GAQPSRHRRQRAPGLA 250
G P GA GPRT G R + +PG A
Sbjct: 157 PAEEG---------PRGAAGGGPRTPPAGRTQGQSGPRESPRASPGSA 195
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 43.5 bits (101), Expect = 3e-04
Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 304 PRSGPVPAHGVASAAAGPATLRAPP--GRGASSETMWPTENLSSRRRAPPQRR--RTRAP 359
P+ P PA ++AA P PP RGA S+ PTE S+ AP RR R R P
Sbjct: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
Query: 360 SIARSLPGSGRLQGLIFPST----GKNVQRHKSPPLPS 393
AR G G +G+ S G+ ++ SP PS
Sbjct: 126 GPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPS 163
Score = 31.2 bits (69), Expect = 1.7
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 25 GRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEG 71
G RRGP P + G +G+ G SG E G AGG+ LRG G
Sbjct: 119 GGRRRGPGPARERGGRGLEEGVSG-----ESLPG---AGGRRLRGSG 157
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 43.5 bits (101), Expect = 3e-04
Identities = 79/320 (24%), Positives = 107/320 (33%), Gaps = 42/320 (13%)
Query: 26 RGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGW 85
RG+ P+PR +QG G +G AG + R + ++ +A
Sbjct: 359 RGKESPSPRSAPSSQGRGGRAAGG------------AGRRRRRRRRRRRSRSSASAPRRR 406
Query: 86 GTVLVSGLVPQDPRAAPPPG-GRQLLLLRPP------RWVPSCFPNSQSADISQEDRKPA 138
G + PR APP G R L R R P P S K A
Sbjct: 407 GR--------RRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRA 458
Query: 139 KRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGV-GRSWASSWAGVPRQPLALDLRP- 196
K RP + +H R G S SPG RSW+SS + + + + RP
Sbjct: 459 KERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPH 518
Query: 197 -TWKAPDARLALGSAR-GPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVT 254
++P + L + G GR A H + E R P R RR+ +P
Sbjct: 519 SPSRSPSPKKPLSRDKDGEGR--ARHSEA-EATRARRRSRSYSPIRKRRRDSPSF----M 571
Query: 255 GVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGV 314
RI A P P PS+ R SP P S +HG
Sbjct: 572 EPRRITSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSR----SPSPGHSHGSYSSRSHGT 627
Query: 315 ASAAAGPATLRAPPGRGASS 334
S P+ +P SS
Sbjct: 628 RSRTRSPSRTPSPSYHSRSS 647
Score = 38.9 bits (89), Expect = 0.008
Identities = 67/286 (23%), Positives = 92/286 (32%), Gaps = 42/286 (14%)
Query: 137 PAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP 196
P +R H + SH SR P GR S + R P
Sbjct: 248 PGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSP------- 300
Query: 197 TWKAPDARLALGSAR---GPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVV 253
+P GS + G G+R H P G+ P + PS R +A A
Sbjct: 301 ---SPSGGSGWGSPQRNGGSGQRSGAHGGRP-GSAHSPPDKPSSPSPRVRDKAAAAAPTP 356
Query: 254 TGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGS---------------- 297
+ P+ PR+ S GRGG+ G G RR R
Sbjct: 357 PARGKESPS------PRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR 410
Query: 298 PRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTR 357
PRP S + +S+ +G PG SE ++ R P R +
Sbjct: 411 PRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPAST 470
Query: 358 APSIARSLPGS-GRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
+PS PG+ GR G S+ ++ H S RSR
Sbjct: 471 SPS-----PGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR 511
Score = 38.1 bits (87), Expect = 0.014
Identities = 67/265 (25%), Positives = 89/265 (33%), Gaps = 45/265 (16%)
Query: 125 SQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAG 184
S+S+ ++++ K+RP H P R S R S S SP + ++ S
Sbjct: 226 SRSSKCKRKEKNKEKKRP--------HTESPG--RRSHRHSSGSSHSPSLSSHYSDS--- 272
Query: 185 VPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQ 244
R P L + R GR+ Q G+R P G+ +R
Sbjct: 273 --RSPSRLSPKH--------------RDEGRKTGS--QRSSGSRSPSPSGGSGWGSPQRN 314
Query: 245 RAPGLALVVTGVSRIRPAHGAPGLPRAPKP----SAGRGGKEGGERGTEMLRRLRGSPRP 300
G G R AH P P +P P A RG E SP P
Sbjct: 315 GGSGQRSGAHG-GRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKE-------SPSP 366
Query: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
P S G A+ AG R R + S P R R P R +R+ S
Sbjct: 367 RSAPSSQG--RGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLS 424
Query: 361 IARSLPGSGRLQGLIFPSTGKNVQR 385
ARS SG +G P +R
Sbjct: 425 RARSSSDSGSGRGAPGPGPEPGSER 449
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 43.5 bits (101), Expect = 3e-04
Identities = 80/365 (21%), Positives = 114/365 (31%), Gaps = 51/365 (13%)
Query: 29 RGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGWGTV 88
+GP P+G QG G G P+ G + ++ G+ Q QG G
Sbjct: 79 QGPPPQGGNKPQGPPPPGKPQGPPPQ---GDKSRSPRSPPGKPQGPPPQGGNQPQG---- 131
Query: 89 LVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPTHFYHP 148
P P+ PP GG + PP P Q + S+ R P + P
Sbjct: 132 --PPPPPGKPQGPPPQGGNKPQGPPPPGKPQG--PPPQGDNKSRSSRSPPGKPQGP---P 184
Query: 149 DEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALG 208
+ QP PG P+ P G P +P + K+ AR G
Sbjct: 185 PQGGNQPQGPPPP--PGKPQGPPPQGGNK--PQGPPPPGKPQGPPPQGDNKSQSARSPPG 240
Query: 209 SARGP---GRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGA 265
+GP G P G Q P G + G S+ R +
Sbjct: 241 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSP 300
Query: 266 PGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLR 325
PG P+ P P G + +G P P P+ P P +
Sbjct: 301 PGKPQGPPPQGG--------------NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 346
Query: 326 APPGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQR 385
PP +G S S R+PP + + + G P G N Q+
Sbjct: 347 GPPPQGGSK---------SRSARSPPGKPQGPPQQEGNNPQGPP-------PPAGGNPQQ 390
Query: 386 HKSPP 390
++PP
Sbjct: 391 PQAPP 395
Score = 36.6 bits (83), Expect = 0.041
Identities = 66/307 (21%), Positives = 99/307 (32%), Gaps = 66/307 (21%)
Query: 93 LVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHK 152
L+ +P+ APP GG + P+ PS P Q +P P P + +
Sbjct: 31 LIAGNPQGAPPQGGNK------PQGPPSP-PGKPQGPPPQGGNQPQGPPPP----PGKPQ 79
Query: 153 AQP----SHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPD-ARLAL 207
P + +G PG P+ P +S R P + +P P
Sbjct: 80 GPPPQGGNKPQGPPPPGKPQGPPPQGDKS---------RSPRSPPGKPQGPPPQGGNQPQ 130
Query: 208 GSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPG 267
G PG+ P+G G P + + P G ++ R + PG
Sbjct: 131 GPPPPPGK--------PQGPPPQGGNKPQGPPPPGKPQGP----PPQGDNKSRSSRSPPG 178
Query: 268 LPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAP 327
P+ P P G + +G P P P+ P P + P
Sbjct: 179 KPQGPPPQGG--------------NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 224
Query: 328 PGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARS----LPGSGRLQGLIFPSTGKNV 383
P +G +N S R+PP + + P P G+ QG P G N
Sbjct: 225 PPQG---------DNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNK 273
Query: 384 QRHKSPP 390
+ PP
Sbjct: 274 PQGPPPP 280
Score = 29.6 bits (65), Expect = 5.0
Identities = 37/152 (24%), Positives = 48/152 (31%), Gaps = 32/152 (21%)
Query: 22 GSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAA 81
GS R R P + Q P P G +P G G+ Q QG
Sbjct: 291 GSKSRSSRSPPGKPQ---------------GPPPQGGNQPQGPPPPPGKPQGPPPQG--- 332
Query: 82 ANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRR 141
G P P+ PP GG + R P P QE P
Sbjct: 333 ----GNKPQGPPPPGKPQGPPPQGGSKSRSARSP-------PGKPQGPPQQEGNNPQGPP 381
Query: 142 PTHFYHPDEHKAQPS-HVRGSRRPGSPRSASP 172
P +P + +A P+ +G RP P+ P
Sbjct: 382 PPAGGNPQQPQAPPAGQPQGPPRP--PQGGRP 411
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 43.1 bits (100), Expect = 4e-04
Identities = 94/328 (28%), Positives = 124/328 (37%), Gaps = 64/328 (19%)
Query: 5 RACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGT----QGVGSGGSGAGVRPEPCAGQR 60
RA S R GAG + G A R GP P Q G +G GS G P A +
Sbjct: 137 RATSPRPRAFDGAGSSLGRAPSPRPGPGPLRQQGPPTPFDFLGRAGSPRG---SPLA-EG 192
Query: 61 PAGGKALRGEGQAQAAQGY-AAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLR---PPR 116
P RG A Y A A+ +G+ L+ APP + L LR P
Sbjct: 193 PQAFFPERGPSPRPPATAYDAPASAFGSSLLGS---GGSAFAPPLRAQDDLTLRRRPPKA 249
Query: 117 WVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSAS--PGV 174
W N D++ E +KP++ T Y + A+P+ P S G
Sbjct: 250 W------NESDLDVAYE-KKPSQ---TASYERLDVFARPASPSLQLLPWRESSLDGLGGT 299
Query: 175 GRSWASSWAGVPR----QPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQL 230
G+ +S A +PR PLA D R A R +LGSA GP L Q +R
Sbjct: 300 GKDNLTS-ATLPRNYKVSPLASDRRS--DAGSYRRSLGSA-GPSGTLPRSWQ--PVSRIP 353
Query: 231 GPRTGAQPSRHRRQRAPGLALVVT--------GVSRIRPAHGAPGLPRAPKPSAGRGGKE 282
P + QP RQR L+++ G SR G+P RAP P
Sbjct: 354 MPPSSPQPRGAPRQRPIPLSMIFKLQNAFWEHGASRAM-LPGSPLFTRAPPP-------- 404
Query: 283 GGERGTEMLRRLRGSPRPNRHPRSGPVP 310
+L+ P+P P+S P P
Sbjct: 405 ----------KLQPQPQPQPQPQSQPQP 422
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,062,119
Number of Sequences: 37866
Number of extensions: 1475715
Number of successful extensions: 10203
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 954
Number of HSP's that attempted gapping in prelim test: 7712
Number of HSP's gapped (non-prelim): 3036
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.