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Search of human proteins with 111120331
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo
sapiens]
(1017 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens] 2074 0.0
gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens] 1105 0.0
gi|39653325 PHD finger protein 20-like 1 isoform 3 [Homo sapiens] 572 e-163
gi|18034775 PHD finger protein 20 [Homo sapiens] 546 e-155
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 62 3e-09
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 62 3e-09
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 61 5e-09
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 54 6e-07
gi|167466270 PHD finger protein 13 [Homo sapiens] 54 6e-07
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 54 7e-07
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 52 4e-06
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 51 5e-06
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 51 5e-06
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 51 5e-06
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 50 8e-06
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 49 2e-05
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 49 2e-05
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 49 3e-05
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 48 5e-05
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 47 9e-05
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 47 9e-05
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 47 1e-04
gi|87299628 biorientation of chromosomes in cell division 1-like... 46 2e-04
gi|116268091 PHD finger protein 23 [Homo sapiens] 45 5e-04
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 45 5e-04
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 45 5e-04
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-04
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 44 8e-04
gi|15011902 synaptotagmin-like 2 isoform a [Homo sapiens] 44 0.001
gi|244790013 synaptotagmin-like 2 isoform g [Homo sapiens] 44 0.001
>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
Length = 1017
Score = 2074 bits (5374), Expect = 0.0
Identities = 1017/1017 (100%), Positives = 1017/1017 (100%)
Query: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
Sbjct: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
Query: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
Sbjct: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
Query: 121 YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA 180
YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA
Sbjct: 121 YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA 180
Query: 181 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 240
AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF
Sbjct: 181 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 240
Query: 241 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 300
GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED
Sbjct: 241 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 300
Query: 301 YNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSS 360
YNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSS
Sbjct: 301 YNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSS 360
Query: 361 GCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLAT 420
GCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLAT
Sbjct: 361 GCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLAT 420
Query: 421 LPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRG 480
LPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRG
Sbjct: 421 LPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRG 480
Query: 481 SEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDK 540
SEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDK
Sbjct: 481 SEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDK 540
Query: 541 SSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSP 600
SSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSP
Sbjct: 541 SSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSP 600
Query: 601 LTRSSGSSLASRSMFTEKTTTYQYPRAILSVDLSGENLSDVDFLDDSSTESLLLSGDEYN 660
LTRSSGSSLASRSMFTEKTTTYQYPRAILSVDLSGENLSDVDFLDDSSTESLLLSGDEYN
Sbjct: 601 LTRSSGSSLASRSMFTEKTTTYQYPRAILSVDLSGENLSDVDFLDDSSTESLLLSGDEYN 660
Query: 661 QDFDSTNFEESQDEDDALNEIVRCICEMDEENGFMIQCEECLCWQHSVCMGLLEESIPEQ 720
QDFDSTNFEESQDEDDALNEIVRCICEMDEENGFMIQCEECLCWQHSVCMGLLEESIPEQ
Sbjct: 661 QDFDSTNFEESQDEDDALNEIVRCICEMDEENGFMIQCEECLCWQHSVCMGLLEESIPEQ 720
Query: 721 YICYICRDPPGQRWSAKYRYDKEWLNNGRMCGLSFFKENYSHLNAKKIVSTHHLLADVYG 780
YICYICRDPPGQRWSAKYRYDKEWLNNGRMCGLSFFKENYSHLNAKKIVSTHHLLADVYG
Sbjct: 721 YICYICRDPPGQRWSAKYRYDKEWLNNGRMCGLSFFKENYSHLNAKKIVSTHHLLADVYG 780
Query: 781 VTEVLHGLQLKIGILKNKHHPDLHLWACSGKRKDQDQIIAGVEKKIAQDTVNREEKKYVQ 840
VTEVLHGLQLKIGILKNKHHPDLHLWACSGKRKDQDQIIAGVEKKIAQDTVNREEKKYVQ
Sbjct: 781 VTEVLHGLQLKIGILKNKHHPDLHLWACSGKRKDQDQIIAGVEKKIAQDTVNREEKKYVQ 840
Query: 841 NHKEPPRLPLKMEGTYITSEHSYQKPQSFGQDCKSLADPGSSDDDDVSSLEEEQEFHMRS 900
NHKEPPRLPLKMEGTYITSEHSYQKPQSFGQDCKSLADPGSSDDDDVSSLEEEQEFHMRS
Sbjct: 841 NHKEPPRLPLKMEGTYITSEHSYQKPQSFGQDCKSLADPGSSDDDDVSSLEEEQEFHMRS 900
Query: 901 KNSLQYSAKEHGMPEKNPAEGNTVFVYNDKKGTEDPGDSHLQWQLNLLTHIENVQNEVTS 960
KNSLQYSAKEHGMPEKNPAEGNTVFVYNDKKGTEDPGDSHLQWQLNLLTHIENVQNEVTS
Sbjct: 901 KNSLQYSAKEHGMPEKNPAEGNTVFVYNDKKGTEDPGDSHLQWQLNLLTHIENVQNEVTS 960
Query: 961 RMDLIEKEVDVLESWLDFTGELEPPDPLARLPQLKRHIKQLLIDMGKVQQIATLCSV 1017
RMDLIEKEVDVLESWLDFTGELEPPDPLARLPQLKRHIKQLLIDMGKVQQIATLCSV
Sbjct: 961 RMDLIEKEVDVLESWLDFTGELEPPDPLARLPQLKRHIKQLLIDMGKVQQIATLCSV 1017
>gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens]
Length = 573
Score = 1105 bits (2859), Expect = 0.0
Identities = 547/548 (99%), Positives = 547/548 (99%)
Query: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
Sbjct: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
Query: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
Sbjct: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
Query: 121 YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA 180
YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA
Sbjct: 121 YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA 180
Query: 181 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 240
AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF
Sbjct: 181 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 240
Query: 241 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 300
GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED
Sbjct: 241 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 300
Query: 301 YNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSS 360
YNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSS
Sbjct: 301 YNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSS 360
Query: 361 GCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLAT 420
GCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLAT
Sbjct: 361 GCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLAT 420
Query: 421 LPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRG 480
LPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRG
Sbjct: 421 LPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRG 480
Query: 481 SEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDK 540
SEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDK
Sbjct: 481 SEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDK 540
Query: 541 SSTAFGKR 548
SSTAFG R
Sbjct: 541 SSTAFGIR 548
>gi|39653325 PHD finger protein 20-like 1 isoform 3 [Homo sapiens]
Length = 285
Score = 572 bits (1473), Expect = e-163
Identities = 284/310 (91%), Positives = 284/310 (91%), Gaps = 26/310 (8%)
Query: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
Sbjct: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
Query: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
Sbjct: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
Query: 121 YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA 180
YDGVIRCLKRMHIKAMPEDAKGQ DWIALVKAAAA
Sbjct: 121 YDGVIRCLKRMHIKAMPEDAKGQ--------------------------DWIALVKAAAA 154
Query: 181 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 240
AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF
Sbjct: 155 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 214
Query: 241 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 300
GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED
Sbjct: 215 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 274
Query: 301 YNETAPMLEQ 310
YNETAPMLEQ
Sbjct: 275 YNETAPMLEQ 284
>gi|18034775 PHD finger protein 20 [Homo sapiens]
Length = 1012
Score = 546 bits (1407), Expect = e-155
Identities = 401/1129 (35%), Positives = 557/1129 (49%), Gaps = 231/1129 (20%)
Query: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
M+K PPNR GI+FE+GA+LEA D L+ WYP+ IE IDYEEGK+L+HF+RW+HRYDEW W
Sbjct: 1 MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW 60
Query: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
DS LRPLE+ LRKEGL +E+ +F+ E+VLA W+DCR+YPAK+ A+NK+GT+TV+F
Sbjct: 61 DSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF 120
Query: 121 YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA 180
YDGV++ +K +H+KA +D +
Sbjct: 121 YDGVVQTVKHIHVKAFSKD------------------------------------QNIVG 144
Query: 181 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEK-KEDLPTSSET 239
A +T K +S+ ++K K++RK AT +V+K KED P
Sbjct: 145 NARPKETDHKSLSSSPDKREKFKEQRK---------------ATVNVKKDKEDKP----- 184
Query: 240 FGLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKE 299
L E PK P E L K G ++ K++ + E KE
Sbjct: 185 --LKTEKRPKQ--PDKEGKLICSEK------------------GKVSEKSLPKNEKEDKE 222
Query: 300 DYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDS 359
+ +E ++ S Q KK E DI + S + ++ K + G
Sbjct: 223 NISEN----DREYSGDAQVDKKPENDI---------------VKSPQENLREPKRKRG-- 261
Query: 360 SGCIKPPKSPLSPELIQVEDLTL---VSQLSSSVINKTSPPQPVNPPRPFKHSER----- 411
+PP ++P + TL +L I+K P+ PR K+S +
Sbjct: 262 ----RPPS--IAPTAVDSNSQTLQPITLELRRRKISK-GCEVPLKRPRLDKNSSQEKSKN 314
Query: 412 ----------RRRSQRLAT-----LPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVP 456
RRRS RL+T + PD V + P D + S+ Q S
Sbjct: 315 YSENTDKDLSRRRSSRLSTNGTHEILDPDLVVSDLVDTDPLQDTLSSTKESEEGQLKSAL 374
Query: 457 EVPDVAH-LPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNE--CPRAEKEDTQMLPNPSS 513
E V+ L G + G E+ P +++ + E P E ++ + ++
Sbjct: 375 EAGQVSSALTCHSFGDG---SGAAGLELNCPSMGENTMKTEPTSPLVELQEISTVEVTNT 431
Query: 514 KAIADGRGAPAAAGISKTEK-KVKLEDKSSTAFGKRK------------EKDKERREKRD 560
D G+ A + K + K+ D F K K EK E E
Sbjct: 432 FKKTDDFGSSNAPAVDLDHKFRCKVVD-CLKFFRKAKLLHYHMKYFHGMEKSLEPEESPG 490
Query: 561 KDHY---------RPKQK--------------KKKKKKKKSKQHDYSDYEDSSLEFLER- 596
K H +P Q+ K K+K K+ K ++ + + ++
Sbjct: 491 KRHVQTRGPSASDKPSQETLTRKRVSASSPTTKDKEKNKEKKFKEFVRVKPKKKKKKKKK 550
Query: 597 ------CSSPLTRSSGSSLASRSMFTEKTTTYQYPRAILSVDLSGENLS---------DV 641
CS ++ +S ++ + + P +S L G +
Sbjct: 551 TKPECPCSEEISDTSQEPSPPKAFAVTRCGSSHKPGVHMSPQLHGPESGHHKGKVKALEE 610
Query: 642 DFLDDSSTESLLLSGDEYNQDFD-STNFEESQDEDDALN-EIVRCICEMDEENGFMIQCE 699
D L +SS+ES L S DEY QD D +TN +E D DD + E+VRCICE+ EEN FMIQCE
Sbjct: 611 DNLSESSSESFLWSDDEYGQDVDVTTNPDEELDGDDRYDFEVVRCICEVQEENDFMIQCE 670
Query: 700 ECLCWQHSVCMGLLEESIPEQYICYICRDPPGQRWSAKYRYDKEWLNNGRMCGLSFFKEN 759
EC CWQH VCMGLLEE++PE+Y CY+C+DPPGQR KY YDKEWL+ G M GL+F +EN
Sbjct: 671 ECQCWQHGVCMGLLEENVPEKYTCYVCQDPPGQRPGFKYWYDKEWLSRGHMHGLAFLEEN 730
Query: 760 YSHLNAKKIVSTHHLLADVYGVTEVLHGLQLKIGILKNKHHPDLHLWACSGKRKDQDQII 819
YSH NAKKIV+TH LL DV V EVLHGLQLK+ IL+++ HPDL LW C ++ +
Sbjct: 731 YSHQNAKKIVATHQLLGDVQRVIEVLHGLQLKMSILQSREHPDLPLW-CQPWKQHSGEGR 789
Query: 820 AGVEKKIAQDTVNREEK---KYVQNHKEPPR-----LPLKMEGTYITSEHSYQKPQSFGQ 871
+ DT ++EE + + E PR LP +E +YITSEH YQKP+++
Sbjct: 790 SHFRNIPVTDTRSKEEAPSYRTLNGAVEKPRPLALPLPRSVEESYITSEHCYQKPRAYYP 849
Query: 872 DCKS---LADPGSSDDDDVSSLEEEQEFHM-----------RSKNS----------LQYS 907
+ + GS+ DD V+ L E + + RSK +Y
Sbjct: 850 AVEQKLVVETRGSALDDAVNPLHENGDDSLSPRLGWPLDQDRSKGDSDPKPGSPKVKEYV 909
Query: 908 AKEHGMPEKNPAEGNTVFVYNDKKGTEDPGDSHLQWQLNLLTHIENVQNEVTSRMDLIEK 967
+K+ +PE+ PA +G E S QWQ NLLTH+E++Q+EVT RMD IEK
Sbjct: 910 SKK-ALPEEAPARKLL------DRGGEGLLSSQHQWQFNLLTHVESLQDEVTHRMDSIEK 962
Query: 968 EVDVLESWLDFTGELEPPDPLARLPQLKRHIKQLLIDMGKVQQIATLCS 1016
E+DVLESWLD+TGELEPP+PLARLPQLK IKQLL+D+GKVQQIA CS
Sbjct: 963 ELDVLESWLDYTGELEPPEPLARLPQLKHCIKQLLMDLGKVQQIALCCS 1011
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 62.0 bits (149), Expect = 3e-09
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 647 SSTESLLLSGDEYNQDFDSTNFEE-------SQDEDDALN-EIVRCICEMDEENGFMIQC 698
S S+L+S +E F + NF+E S ED + ++ RCIC ++G+MI C
Sbjct: 77 SPPPSVLISKNEVGI-FTTPNFDETSSATTISTSEDGSYGTDVTRCICGFTHDDGYMICC 135
Query: 699 EECLCWQHSVCMGLLEESIPEQYICYICR 727
++C WQH CMG+ + IP+ Y+C C+
Sbjct: 136 DKCSVWQHIDCMGIDRQHIPDTYLCERCQ 164
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 62.0 bits (149), Expect = 3e-09
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 647 SSTESLLLSGDEYNQDFDSTNFEE-------SQDEDDALN-EIVRCICEMDEENGFMIQC 698
S S+L+S +E F + NF+E S ED + ++ RCIC ++G+MI C
Sbjct: 77 SPPPSVLISKNEVGI-FTTPNFDETSSATTISTSEDGSYGTDVTRCICGFTHDDGYMICC 135
Query: 699 EECLCWQHSVCMGLLEESIPEQYICYICR 727
++C WQH CMG+ + IP+ Y+C C+
Sbjct: 136 DKCSVWQHIDCMGIDRQHIPDTYLCERCQ 164
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 61.2 bits (147), Expect = 5e-09
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 662 DFDSTNFEESQDEDDALNEIVRCICEMDEENGFMIQCEECLCWQHSVCMGLLEESIPEQY 721
D T+ E ++ + ++++RCIC + ++ G MIQC++C+ WQH CMG+ S E Y
Sbjct: 2561 DSSETSVSEKENGHEKDDDVIRCICGLYKDEGLMIQCDKCMVWQHCDCMGV--NSDVEHY 2618
Query: 722 ICYICRDPPGQR 733
+C C P R
Sbjct: 2619 LCEQCDPRPVDR 2630
Score = 34.7 bits (78), Expect = 0.47
Identities = 58/290 (20%), Positives = 109/290 (37%), Gaps = 57/290 (19%)
Query: 337 LLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLS------SSV 390
+LS + +S + + +G + G I PP P S ++ + SQ S S V
Sbjct: 1062 ILSGSPTSLAVLEQTAQQAAGSALGQILPPLLPSSASSSEILPSPICSQSSGTSGGQSPV 1121
Query: 391 INKTSPPQPVNPPRPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQ 450
+ +P + P HS R+ + TL M +S+ +
Sbjct: 1122 SSDAGFVEPSSVPYLHLHS---RQGSMIQTLAMKK--------------------ASKGR 1158
Query: 451 QESSVPEVPDVAHLPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPN 510
+ S P + LP S SE+T+ + S P +E + +P+
Sbjct: 1159 RRLSPPTL--------------LPNSPSHLSELTSLKEATPS-----PISESHSDETIPS 1199
Query: 511 PSSKAIADGRGAPAAAGISKTEKKVK-------LEDKSSTAFGKRKEKDKERREKRDKDH 563
S + + A +K+ + ++ST KEK K + ++R+ D+
Sbjct: 1200 DSGIGTDNNSTSDRAEKFCGQKKRRHSFEHVSLIPPETSTVLSSLKEKHKHKCKRRNHDY 1259
Query: 564 YRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSPLTRSSGSSLASRS 613
+ K++K+K+K K + +D +F+ ++R S + RS
Sbjct: 1260 LSYDKMKRQKRKRKKKYPQLRNRQDP--DFIAELEELISRLSEIRITHRS 1307
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 54.3 bits (129), Expect = 6e-07
Identities = 76/323 (23%), Positives = 134/323 (41%), Gaps = 65/323 (20%)
Query: 306 PMLEQAISPKPQSQKKNEADISSSANT-QKPALLSSTLSSGKARSKKCKHESGDSSGCIK 364
P+ ++ +PK +++ + + S T Q PA++ S + S K SK+ K S G K
Sbjct: 262 PLETKSFTPKTKTKTSSPGQKTKSPKTAQSPAMVGSPIRSPKTVSKEKK-----SPGRSK 316
Query: 365 PPKSPLSPELI----------QVEDLTLVSQLSSSVINKTSPPQPVN-PPRPFKHSERRR 413
PKSP SP++ + + T + LS + +T + + PP K + +
Sbjct: 317 SPKSPKSPKVTTHIPQTPVRPETPNRTPSATLSEKISKETIQVKQIQTPPDAGKLNSENQ 376
Query: 414 RSQRLATLPMPDDSVEKVSSPSPAT-DGKVFSISSQNQQESSVPEVPDVAHLP------- 465
+ + + S++ V + + A + F SS ++ E + P P
Sbjct: 377 PKKAVVADKTIEASIDAVIARACAEREPDPFEFSSGSESEGDIFTSPKRISGPECTTPKA 436
Query: 466 ------LEKLGPCLPLDLSRGSEVTAPVASDSSYR-----NECPRAEKEDTQM------- 507
K G PL LS G+ +SD+S+ +E R K T
Sbjct: 437 STSANNFTKSGST-PLPLSGGTS-----SSDNSWTMDASIDEVVRKAKLGTPSNMPPNFP 490
Query: 508 ----------LPNPSSKAIADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERRE 557
P P K + P++ + +KK+K E K+ K+KEK ++R
Sbjct: 491 YISSPSVSPPTPEPLHKVYEEKTKLPSSVEV---KKKLKKELKTKM---KKKEKQRDRER 544
Query: 558 KRDKDHYRPKQKKKKKKKKKSKQ 580
++DK+ + K+K K K+K+K K+
Sbjct: 545 EKDKNKDKSKEKDKVKEKEKDKE 567
Score = 38.5 bits (88), Expect = 0.032
Identities = 17/48 (35%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 532 EKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSK 579
++KVK ++K K+K+K+KE +EK++K+ + K++++K++K+K K
Sbjct: 693 KEKVKEKEKKKDKKEKKKKKEKE-KEKKEKEREKEKREREKREKEKEK 739
Score = 38.5 bits (88), Expect = 0.032
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSK 579
K ++K K +DK K KEK+K+ +E+ + R K++K+K+K K K
Sbjct: 695 KVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEK 744
Score = 37.4 bits (85), Expect = 0.072
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 547 KRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLE 592
+ KEK KE+ +K+DK + K++K+K+KK+K ++ + + E E
Sbjct: 691 EEKEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKE 736
Score = 33.9 bits (76), Expect = 0.80
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKK 574
K +KK K + K K KE++KE+RE+ ++ + K K +K K
Sbjct: 702 KKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIK 746
Score = 33.5 bits (75), Expect = 1.0
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 536 KLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKK----KKSKQHDYSDYEDSSL 591
KL ++ K K+KDK+ ++K+ + K+K+++K+K K+ K+ + +E +
Sbjct: 688 KLFEEKEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKV 747
Query: 592 EFLERCSSPL 601
E + SP+
Sbjct: 748 EPVALAPSPV 757
Score = 32.7 bits (73), Expect = 1.8
Identities = 78/386 (20%), Positives = 142/386 (36%), Gaps = 43/386 (11%)
Query: 224 TPDVEKKEDLPTSSETFGLHVENVPKMV-FPQPESTLSNKRKNNQGNSFQAKRARLNKIT 282
TP + K P +T P MV P +K K + G S K + K+T
Sbjct: 269 TPKTKTKTSSP-GQKTKSPKTAQSPAMVGSPIRSPKTVSKEKKSPGRSKSPKSPKSPKVT 327
Query: 283 GLLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTL 342
+ V + + + + ++ I K + ++S +K + T+
Sbjct: 328 THIPQTPVRPETPNRTPSATLSEKISKETIQVKQIQTPPDAGKLNSENQPKKAVVADKTI 387
Query: 343 SSG--KARSKKCKHESGD----SSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKT-- 394
+ ++ C D SSG SP+ I + T + S+S N T
Sbjct: 388 EASIDAVIARACAEREPDPFEFSSGSESEGDIFTSPKRISGPECT-TPKASTSANNFTKS 446
Query: 395 -SPPQPVNPPRPFKHSE-----------RRRRSQRLATLP--MPDDSVEKVSSPSPATDG 440
S P P++ + R+ + + +P P S VS P+P
Sbjct: 447 GSTPLPLSGGTSSSDNSWTMDASIDEVVRKAKLGTPSNMPPNFPYISSPSVSPPTPEPLH 506
Query: 441 KVFSISSQNQQESSVPEVPDVAH-LPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPR 499
KV+ ++++ +P +V L E + R E D S + +
Sbjct: 507 KVY------EEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVK 560
Query: 500 AEKEDTQM---LPNPSSKAIADGRGAPAAAGISKTEK---KVKLEDKSSTAFGKRKEKDK 553
+++D + P + + + P I + E KVKL+D RKEK+K
Sbjct: 561 EKEKDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDPKVKLKDGLV-----RKEKEK 615
Query: 554 ERREKRDKDHYRPKQKKKKKKKKKSK 579
+ +K+D++ + + K++K+K K K
Sbjct: 616 HKDKKKDREKGKKDKDKREKEKVKDK 641
Score = 32.3 bits (72), Expect = 2.3
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSK 579
K +KK K E K K KEK ++ REK ++ + +++K+K K +K K
Sbjct: 699 KEKKKDKKEKKKKKE--KEKEKKEKEREKEKREREKREKEKEKHKHEKIK 746
Score = 31.6 bits (70), Expect = 4.0
Identities = 59/279 (21%), Positives = 87/279 (31%), Gaps = 42/279 (15%)
Query: 169 EDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDV- 227
ED VK K K K + KDKD+R+ KV K E P +
Sbjct: 596 EDVDPKVKLKDGLVRKEKEKHKDKKKDREKGKKDKDKREKEKVKDKGREDKMKAPAPPLV 655
Query: 228 --EKKEDLPTSSETFGLHV-ENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGL 284
K+ LP S V +P ++ PE K K + + K+ + K
Sbjct: 656 LPPKELALPLFSPATASRVPAMLPSLLPVLPEKLFEEKEKVKEKEKKKDKKEKKKK---- 711
Query: 285 LASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSS 344
EKKE E + + + K + + A P + TL
Sbjct: 712 ------KEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAPSPVIPRLTLRV 765
Query: 345 GKARSKKCKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPR 404
G + K S + P++ +P S KT PP P P
Sbjct: 766 GAGQDKIV------ISKVVPAPEAKPAP---------------SQNRPKTPPPAPAPAPG 804
Query: 405 PFKHSER-------RRRSQRLATLPMPDDSVEKVSSPSP 436
P S + + A LP P + S+ +P
Sbjct: 805 PMLVSPAPVPLPLLAQAAAGPALLPSPGPAASGASAKAP 843
Score = 30.8 bits (68), Expect = 6.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 675 DDALNEIVRCI-CEMDEENGFMIQCEECLCWQHSVCMGLLEESIPE-QYICYIC 726
D+ N+I C C ++ MI C++C W H C+G++ E Q+ C C
Sbjct: 859 DEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMTAPPEEMQWFCPKC 912
>gi|167466270 PHD finger protein 13 [Homo sapiens]
Length = 300
Score = 54.3 bits (129), Expect = 6e-07
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 21/182 (11%)
Query: 556 REKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLE------FLERCSSPLTRSSGSSL 609
R+K DK +KKKK+K++ S Y L+ ++E +SP + +
Sbjct: 110 RKKTDK-----LKKKKKRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAP 164
Query: 610 ASRSMFTEKTTTYQYPRAILSVDLSGENLSDVDFLDDSSTESLLLSGDEYN-QDFDSTNF 668
+ + T A +S D V + +++ G + +D DST
Sbjct: 165 SDPCSGWDSDTPSSGSCATVSPD-------QVKEIKTEGKRTIVRQGKQVVFRDEDSTGN 217
Query: 669 EES--QDEDDALNEIVRCICEMDEENGFMIQCEECLCWQHSVCMGLLEESIPEQYICYIC 726
+E D DD ++V C C MI+C EC W H C + + ++PE ++C C
Sbjct: 218 DEDIMVDSDDDSWDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKC 277
Query: 727 RD 728
RD
Sbjct: 278 RD 279
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 53.9 bits (128), Expect = 7e-07
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 63/284 (22%)
Query: 301 YNETAPMLEQAISPKPQSQKKNEADISSS---ANTQKPALLSSTLSSGKARSKKCKHESG 357
Y+ + P + SP P +++ +++ P SS ++ ++ S KH G
Sbjct: 604 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKG 663
Query: 358 DS-SGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPV------NPPRPFKHSE 410
S S + +SP + Q SSS P PV +P R S
Sbjct: 664 SSPSRSTREARSPQPNKRHSPSPRPRAPQTSSS-------PPPVRRGASSSPQRRQSPSP 716
Query: 411 RRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLG 470
R +R++ P P ++K +SPSP + +V S ++ S PE P K
Sbjct: 717 STRPIRRVSRTPEPK-KIKKAASPSPQSVRRV----SSSRSVSGSPE-------PAAKKP 764
Query: 471 PCLPLDLSRGSEVTAPVASDSSYRNECPRAE-KEDTQMLPNPSSKAIADGRGAPAAAGIS 529
P P +PV S S N P K+ P+PS +D G
Sbjct: 765 PAPP----------SPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGG------- 807
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKK 573
GK+K+K K+++ K+DK H + K+ KK+K
Sbjct: 808 ----------------GKKKKKKKDKKHKKDKKHKKHKKHKKEK 835
Score = 35.4 bits (80), Expect = 0.27
Identities = 60/285 (21%), Positives = 101/285 (35%), Gaps = 30/285 (10%)
Query: 190 KPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSE-TFGLHVENVP 248
+ R+ + S + + K R P KKE+T + P V+ KE P+ E T + VP
Sbjct: 193 RKRSHSRSPRHRTKS-RSPSPAPEKKEKTPE-LPEPSVKVKE--PSVQEATSTSDILKVP 248
Query: 249 KMV-FPQPE--STLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETA 305
K P+P+ S N +K + + + +K S++ ++ +
Sbjct: 249 KPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRS 308
Query: 306 ------PMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDS 359
P + SP+ ++ + ++ P S+ + S S
Sbjct: 309 YSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSR 368
Query: 360 SGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHS-----ERRRR 414
S KPPK SP +S +S + P P PP +HS R R
Sbjct: 369 SPPKKPPKRTSSPP----RKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTR 424
Query: 415 SQRLATLP-------MPDDSVEKVSSPSPATDGKVFSISSQNQQE 452
R++ P EK SPSPA + +S + +
Sbjct: 425 KSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDK 469
Score = 34.3 bits (77), Expect = 0.61
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 521 GAPAA-AGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSK 579
G P+A + K E K + ++ A K++++DK++R+K +K+ R K+++ + +++ K
Sbjct: 118 GIPSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRR-K 176
Query: 580 QHDYSDYEDSSLEFLER----CSSPLTRSSGSSLASRSMFTEKTTTYQYPRAILSVDLSG 635
S SS ER SP R+ S + EKT P +
Sbjct: 177 SRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQ 236
Query: 636 ENLSDVDFL 644
E S D L
Sbjct: 237 EATSTSDIL 245
Score = 30.8 bits (68), Expect = 6.8
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 494 RNECPRAEK-EDTQMLPNPSSKAIADG-RGAPAAAGISKTEKKVKLED--KSSTAFGKRK 549
R+ P EK E T LP PS K + A + + I K K + + + S +K
Sbjct: 208 RSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKK 267
Query: 550 EKDKERREKRDKDHYRPKQKKKKKKKKKSKQH 581
EK+KE+ R R + K + + + +S H
Sbjct: 268 EKEKEKTRPRS----RSRSKSRSRTRSRSPSH 295
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 51.6 bits (122), Expect = 4e-06
Identities = 22/52 (42%), Positives = 38/52 (73%)
Query: 529 SKTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQ 580
+KT+K+ K++T K KEK+KE+ ++++K+ + K+K+KKKKKKK K+
Sbjct: 56 TKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKK 107
Score = 33.5 bits (75), Expect = 1.0
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHD 582
K +KK + K++T KR K+ K+ + K+K+K+K+K+K K+ +
Sbjct: 43 KKKKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKE 95
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 51.2 bits (121), Expect = 5e-06
Identities = 89/474 (18%), Positives = 174/474 (36%), Gaps = 37/474 (7%)
Query: 184 KNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF--G 241
+ + G K +S +S +D++ D + K S A + + ++ T G
Sbjct: 257 EEEEGKKDESSCSSEEDEEDDSESEAETDKTKPLASVTNANTSSTQAAPVAVTTPTVSSG 316
Query: 242 LHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKIT--GLLASKAVGVDGAEKKE 299
P FP + +S K + + S R L K G LA +G ++K+
Sbjct: 317 QATPTSPIKKFPTTATKISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKD 376
Query: 300 DYNETAPMLEQAISPKPQSQKKNEADISSSANTQK-------PALLSSTLSSGKARSKKC 352
TA + A SP+ S N+ S T+ P L+ST + ++
Sbjct: 377 ----TAGVTRSASSPRLSSSLDNKEKEKDSKGTRLAYVAPTIPRRLASTSDIEEKENRDS 432
Query: 353 KHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQ----------LSSSVINKTSPPQPVNP 402
SS + + L E T +SSSV + TS P +
Sbjct: 433 SSLRTSSSYTRRKWEDDLKKNSSVNEGSTYHKSCSFGRRQDDLISSSVPSTTSTPTVTSA 492
Query: 403 PRPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVA 462
++ S T + S + S T ++++ S +++ SVP +
Sbjct: 493 AG----LQKSLLSSTSTTTKITTGSSSAGTQSS--TSNRLWAEDSTEKEKDSVPTAVTIP 546
Query: 463 HLP--LEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGR 520
P + L + V++ R+ E+++ S+ R
Sbjct: 547 VAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESESQRKARSRQARQSR 606
Query: 521 GAPAAAGIS---KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKK 577
+ ++ + EK + + T + +EK+KE +EK+DK+ K++ + ++ +
Sbjct: 607 RSTQGVTLTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQEEKKESETSREDE 666
Query: 578 SKQHDYSDYEDSSLEFLERCSSPLTRSSGSSLASRSMFTEKTTTYQYPRAILSV 631
KQ YS D + + S+ + + SSL++ S ++ P +++ +
Sbjct: 667 YKQ-KYSRTYDETYQRYRPVSTSSSTTPSSSLSTMSSSLYASSQLNRPNSLVGI 719
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 51.2 bits (121), Expect = 5e-06
Identities = 89/474 (18%), Positives = 174/474 (36%), Gaps = 37/474 (7%)
Query: 184 KNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF--G 241
+ + G K +S +S +D++ D + K S A + + ++ T G
Sbjct: 344 EEEEGKKDESSCSSEEDEEDDSESEAETDKTKPLASVTNANTSSTQAAPVAVTTPTVSSG 403
Query: 242 LHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKIT--GLLASKAVGVDGAEKKE 299
P FP + +S K + + S R L K G LA +G ++K+
Sbjct: 404 QATPTSPIKKFPTTATKISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKD 463
Query: 300 DYNETAPMLEQAISPKPQSQKKNEADISSSANTQK-------PALLSSTLSSGKARSKKC 352
TA + A SP+ S N+ S T+ P L+ST + ++
Sbjct: 464 ----TAGVTRSASSPRLSSSLDNKEKEKDSKGTRLAYVAPTIPRRLASTSDIEEKENRDS 519
Query: 353 KHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQ----------LSSSVINKTSPPQPVNP 402
SS + + L E T +SSSV + TS P +
Sbjct: 520 SSLRTSSSYTRRKWEDDLKKNSSVNEGSTYHKSCSFGRRQDDLISSSVPSTTSTPTVTSA 579
Query: 403 PRPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVA 462
++ S T + S + S T ++++ S +++ SVP +
Sbjct: 580 AG----LQKSLLSSTSTTTKITTGSSSAGTQSS--TSNRLWAEDSTEKEKDSVPTAVTIP 633
Query: 463 HLP--LEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGR 520
P + L + V++ R+ E+++ S+ R
Sbjct: 634 VAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESESQRKARSRQARQSR 693
Query: 521 GAPAAAGIS---KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKK 577
+ ++ + EK + + T + +EK+KE +EK+DK+ K++ + ++ +
Sbjct: 694 RSTQGVTLTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQEEKKESETSREDE 753
Query: 578 SKQHDYSDYEDSSLEFLERCSSPLTRSSGSSLASRSMFTEKTTTYQYPRAILSV 631
KQ YS D + + S+ + + SSL++ S ++ P +++ +
Sbjct: 754 YKQ-KYSRTYDETYQRYRPVSTSSSTTPSSSLSTMSSSLYASSQLNRPNSLVGI 806
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 51.2 bits (121), Expect = 5e-06
Identities = 89/474 (18%), Positives = 174/474 (36%), Gaps = 37/474 (7%)
Query: 184 KNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF--G 241
+ + G K +S +S +D++ D + K S A + + ++ T G
Sbjct: 344 EEEEGKKDESSCSSEEDEEDDSESEAETDKTKPLASVTNANTSSTQAAPVAVTTPTVSSG 403
Query: 242 LHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKIT--GLLASKAVGVDGAEKKE 299
P FP + +S K + + S R L K G LA +G ++K+
Sbjct: 404 QATPTSPIKKFPTTATKISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKD 463
Query: 300 DYNETAPMLEQAISPKPQSQKKNEADISSSANTQK-------PALLSSTLSSGKARSKKC 352
TA + A SP+ S N+ S T+ P L+ST + ++
Sbjct: 464 ----TAGVTRSASSPRLSSSLDNKEKEKDSKGTRLAYVAPTIPRRLASTSDIEEKENRDS 519
Query: 353 KHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQ----------LSSSVINKTSPPQPVNP 402
SS + + L E T +SSSV + TS P +
Sbjct: 520 SSLRTSSSYTRRKWEDDLKKNSSVNEGSTYHKSCSFGRRQDDLISSSVPSTTSTPTVTSA 579
Query: 403 PRPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVA 462
++ S T + S + S T ++++ S +++ SVP +
Sbjct: 580 AG----LQKSLLSSTSTTTKITTGSSSAGTQSS--TSNRLWAEDSTEKEKDSVPTAVTIP 633
Query: 463 HLP--LEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGR 520
P + L + V++ R+ E+++ S+ R
Sbjct: 634 VAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESESQRKARSRQARQSR 693
Query: 521 GAPAAAGIS---KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKK 577
+ ++ + EK + + T + +EK+KE +EK+DK+ K++ + ++ +
Sbjct: 694 RSTQGVTLTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQEEKKESETSREDE 753
Query: 578 SKQHDYSDYEDSSLEFLERCSSPLTRSSGSSLASRSMFTEKTTTYQYPRAILSV 631
KQ YS D + + S+ + + SSL++ S ++ P +++ +
Sbjct: 754 YKQ-KYSRTYDETYQRYRPVSTSSSTTPSSSLSTMSSSLYASSQLNRPNSLVGI 806
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 50.4 bits (119), Expect = 8e-06
Identities = 85/406 (20%), Positives = 141/406 (34%), Gaps = 51/406 (12%)
Query: 184 KNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLH 243
+ + S+ T K K KD + + S + E +KK+ S H
Sbjct: 175 RESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKK-----SSKKKKHRSESESKKRKH 229
Query: 244 VENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNE 303
PK + KRK ++ + K R ++ T ++ + + + +
Sbjct: 230 RSPTPK----SKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAK 285
Query: 304 TAPMLEQAISPKPQSQKKNEADISSS----ANTQKPALLSSTL---SSGKARSKKCKHES 356
T SP P S ++ E D S +TQ+P+ + SS K K E
Sbjct: 286 THTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEK 345
Query: 357 GDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSP--PQPVNPPRPFKHSERRRR 414
+ P +S PE L S T+P +PVNPP + S R R
Sbjct: 346 SATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPS--EASPTRDR 403
Query: 415 SQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLP 474
S + +P S + S PSP + ++ SS PE P A P
Sbjct: 404 SPPKSPEKLPQSSSSESSPPSPQP-------TKVSRHASSSPESPKPAPAP--------- 447
Query: 475 LDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKK 534
GS ++S + +N K D PS + GR A T K+
Sbjct: 448 -----GSH--REISSSPTSKNRSHGRAKRDKSHSHTPSRRM---GRSRSPA-----TAKR 492
Query: 535 VKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQ 580
+ ++ T G + + + R R + + +++ + +S Q
Sbjct: 493 GRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQ 538
Score = 40.4 bits (93), Expect = 0.009
Identities = 77/421 (18%), Positives = 150/421 (35%), Gaps = 69/421 (16%)
Query: 260 SNKRKNNQGNSFQAKRARLN--KITGLLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQ 317
+++R++ +S + K++R++ + L + ++ + + ++P +Q P+
Sbjct: 736 TSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPR 795
Query: 318 SQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLSPEL--- 374
+ + + + T SS+ K +SK +S SS KS P
Sbjct: 796 RSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSI 855
Query: 375 --IQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLATLPMPDDSVEKVS 432
Q + ++ Q S ++SP + P +HS R+ + P S + S
Sbjct: 856 TSPQANEQSVTPQRRSCF--ESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSS 913
Query: 433 SPSPATDGKVFSISSQNQQESSVPEVPDVAHL---------------------------- 464
SP P KV +I S Q+ S P + +
Sbjct: 914 SPQP----KVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPRYSH 969
Query: 465 -----PLEKLGPCLPLDLSRGSEV---------TAPVASDSSYRNECPRAEKEDTQMLPN 510
P K+ P P S + T P S S ++ CP+ + +D+ +
Sbjct: 970 SGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPGPSLSGSKSPCPQEKSKDSLVQSC 1029
Query: 511 PSSKAIADGRGAPAAAGIS---------KTEKKVKLEDKSSTAFGKRKEKDKERREKRDK 561
P S ++ G + G S K + + + +S T+ + ++ E + K
Sbjct: 1030 PGSLSLCAGVKSSTPPGESYFGVSSLQLKGQSQTSPDHRSDTSSPEVRQSHSESPSLQSK 1089
Query: 562 DHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSPLTRSSGSSLASRSMFTEKTTT 621
PK + + ++ S EF +SP+ +S S SR F +++
Sbjct: 1090 SQTSPKGGRSRSSSPVTELASRSPIRQDRGEF---SASPMLKSGMSPEQSR--FQSDSSS 1144
Query: 622 Y 622
Y
Sbjct: 1145 Y 1145
Score = 38.1 bits (87), Expect = 0.042
Identities = 48/203 (23%), Positives = 74/203 (36%), Gaps = 34/203 (16%)
Query: 257 STLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQAISPKP 316
S+ S+ ++ G+S + +A K V KE E P P P
Sbjct: 2546 SSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPP-----EPTP 2600
Query: 317 QSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQ 376
+K+ + SSS+++ + SS+ SS + S S SS P + P+ +
Sbjct: 2601 AKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQAL- 2659
Query: 377 VEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLATLPMPDDSV--EKVSSP 434
P+P +P +P ERR RS R P DS+ + S
Sbjct: 2660 --------------------PKPASPKKP-PPGERRSRSPR-----KPIDSLRDSRSLSY 2693
Query: 435 SPATDGKVFSISSQNQQESSVPE 457
SP + S Q+SS E
Sbjct: 2694 SPVERRRPSPQPSPRDQQSSSSE 2716
Score = 37.0 bits (84), Expect = 0.094
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 499 RAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDK-----SSTAFGKRKEKDK 553
R +E Q P P + + + K +KK K +D+ SS+ +RK+ K
Sbjct: 155 RRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSK 214
Query: 554 ERR-----EKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSPLTRSSGSS 608
+++ E + + H P K K+K K K ++ S R +S + SS +
Sbjct: 215 KKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDT 274
Query: 609 LASRS 613
SRS
Sbjct: 275 SRSRS 279
Score = 36.6 bits (83), Expect = 0.12
Identities = 65/320 (20%), Positives = 113/320 (35%), Gaps = 72/320 (22%)
Query: 283 GLLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTL 342
G+L+ A GV ++ E T A++ ++++ + SSS SS+
Sbjct: 2492 GMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSS---------SSSS 2542
Query: 343 SSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNP 402
SS + S SG SS + P+ PE + ++ + + + + PP+P
Sbjct: 2543 SSSSSSSSSSSSSSGSSSSDSEGSSLPVQPE-VALKRVPSPTPAPKEAVREGRPPEPTP- 2600
Query: 403 PRPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVA 462
++R+RRS SS S ++ S SS + SS
Sbjct: 2601 ------AKRKRRSS---------------SSSSSSSSSSSSSSSSSSSSSSS-------- 2631
Query: 463 HLPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGA 522
S ++ +S SS + P K Q LP P+S +
Sbjct: 2632 ------------------SSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASP-----KKP 2668
Query: 523 PAAAGISKTEKKV--KLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQ 580
P S++ +K L D S ++ ERR R P+ ++ ++ S++
Sbjct: 2669 PPGERRSRSPRKPIDSLRDSRSLSY-----SPVERR--RPSPQPSPRDQQSSSSERGSRR 2721
Query: 581 HDYSDYEDSSLEFLERCSSP 600
D S + SP
Sbjct: 2722 GQRGDSRSPSHKRRRETPSP 2741
Score = 32.7 bits (73), Expect = 1.8
Identities = 66/328 (20%), Positives = 115/328 (35%), Gaps = 38/328 (11%)
Query: 302 NETAPMLEQAISPKPQSQKKNEADISSSANTQK---PALLSSTLSSGKARSKKCKHESGD 358
N P A +P + + A ++ ++ T PAL + L+S + + SG
Sbjct: 2337 NLVGPRSAHATAPVNIAGSRTAAALAPASLTSARMAPALSGANLTSPRVPLSAYERVSGR 2396
Query: 359 SSGCI-------KPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSER 411
+S + PP +P + + S++ + PP P P S
Sbjct: 2397 TSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVP-SAF 2455
Query: 412 RRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGP 471
+S+ L P + +SS + AT S + + SVP P V H
Sbjct: 2456 SDQSRCLIAQTTPVAGSQSLSSGAVAT---TTSSAGDHNGMLSVP-APGVPH-------- 2503
Query: 472 CLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKT 531
S+V P AS + + A + + + SS + + + +++ S +
Sbjct: 2504 ---------SDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSS 2554
Query: 532 EKKVKLEDKSSTAFGKRKEKDKER------REKRDKDHYRPKQKKKKKKKKKSKQHDYSD 585
D ++ + E +R K RP + K+K++S S
Sbjct: 2555 SSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSS 2614
Query: 586 YEDSSLEFLERCSSPLTRSSGSSLASRS 613
SS SS + SS SS +S S
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSS 2642
Score = 32.3 bits (72), Expect = 2.3
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 509 PNPSSKAIADGRGAPAAAGISKTEKKV---KLEDKSSTAFGKRKEKD---KERREKRDKD 562
P K RG + + + E+K K + +S + KRK + K +R+ +DK
Sbjct: 185 PKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKK 244
Query: 563 HYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSPLTRSSGSSLASRS 613
R + K +++ + +D SS R S ++ ++LA RS
Sbjct: 245 RKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRS 295
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 49.3 bits (116), Expect = 2e-05
Identities = 91/432 (21%), Positives = 164/432 (37%), Gaps = 48/432 (11%)
Query: 168 SEDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFK--VPSKKEETSTCIATP 225
SE + + ++ + G+ P TS S + K K K +P ++ T ++
Sbjct: 1008 SEAQPPVARTQPSSGVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLPEVQQATKAPESSD 1067
Query: 226 DVEKKEDLPTSSETFG---LHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKIT 282
D E D + SE G ++ +V P P T + + +S A +
Sbjct: 1068 DSEDSSDSSSGSEEDGEGPQGAKSAHTLVGPTPSRTETLVEETAAESSEDDVVAPSQSL- 1126
Query: 283 GLLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTL 342
L G+ A + ++ P L+ + S K++ D A Q+ A + S
Sbjct: 1127 -LSGYMTPGLTPANSQA--SKATPKLDSSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPK 1183
Query: 343 SSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNP 402
+ GK + + KP K +P Q L L S ++ ++ +
Sbjct: 1184 TGGKEAASGTTPQKSR-----KPKKGAGNP---QASTLALQSNITQCLLGQ--------- 1226
Query: 403 PRPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVA 462
P P ++ + ++ T + + +KV + + K + S + + P
Sbjct: 1227 PWPLNEAQVQASVVKVLT-ELLEQERKKVVDTTKESSRKGWE-SRKRKLSGDQPAARTPR 1284
Query: 463 HLPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKED-------TQMLPNPSSKA 515
+KLG + S E T+ + + R++ KE +Q + +
Sbjct: 1285 SKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEE 1344
Query: 516 IADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDK-------DHYRPKQ 568
+ G G G ++ K K E K S +++KDKE++EK+ K D P Q
Sbjct: 1345 LQKGMGT--VEGGDQSNPKSKKEKKKSD----KRKKDKEKKEKKKKAKKASTKDSESPSQ 1398
Query: 569 KKKKKKKKKSKQ 580
KKKKKKKK ++Q
Sbjct: 1399 KKKKKKKKTAEQ 1410
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 48.9 bits (115), Expect = 2e-05
Identities = 90/420 (21%), Positives = 159/420 (37%), Gaps = 48/420 (11%)
Query: 180 AAAAKNKTGSKPRTSANSNKDKDKDERKWFK--VPSKKEETSTCIATPDVEKKEDLPTSS 237
A + G+ P TS S + K K K +P ++ T ++ D E D + S
Sbjct: 1059 ATQVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLPEVQQATKAPESSDDSEDSSDSSSGS 1118
Query: 238 ETFG---LHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDG 294
E G ++ +V P P T + + +S A + L G+
Sbjct: 1119 EEDGEGPQGAKSAHTLVGPTPSRTETLVEETAAESSEDDVVAPSQSL--LSGYMTPGLTP 1176
Query: 295 AEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKH 354
A + ++ P L+ + S K++ D A Q+ A + S + GK +
Sbjct: 1177 ANSQA--SKATPKLDSSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTP 1234
Query: 355 ESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRR 414
+ KP K +P Q L L S ++ ++ + P P ++ +
Sbjct: 1235 QKSR-----KPKKGAGNP---QASTLALQSNITQCLLGQ---------PWPLNEAQVQAS 1277
Query: 415 SQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLP 474
++ T + + +KV + + K + S + + P +KLG
Sbjct: 1278 VVKVLT-ELLEQERKKVVDTTKESSRKGWE-SRKRKLSGDQPAARTPRSKKKKKLGAGEG 1335
Query: 475 LDLSRGSEVTAPVASDSSYRNECPRAEKED-------TQMLPNPSSKAIADGRGAPAAAG 527
+ S E T+ + + R++ KE +Q + + + G G G
Sbjct: 1336 GEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGT--VEG 1393
Query: 528 ISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDK-------DHYRPKQKKKKKKKKKSKQ 580
++ K K E K S +++KDKE++EK+ K D P QKKKKKKKK ++Q
Sbjct: 1394 GDQSNPKSKKEKKKSD----KRKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKKKTAEQ 1449
Score = 37.7 bits (86), Expect = 0.055
Identities = 82/413 (19%), Positives = 144/413 (34%), Gaps = 66/413 (15%)
Query: 179 AAAAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEK--KEDLPTS 236
AA AK S P +++ S++++++ E + K + T++ + D+ KE
Sbjct: 69 AALQAKKTRVSDPISTSESSEEEEEAEAETAKATPRLASTNSSVLGADLPSSMKEKAKAE 128
Query: 237 SETFGLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAE 296
+E G ++P P T++N A ++ +V GA
Sbjct: 129 TEKAGKTGNSMPH---PATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAA 185
Query: 297 KKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHES 356
K + S + S +E D+ + + + +S++S+ ++ ++K
Sbjct: 186 AKPGMVSAG---QADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP 242
Query: 357 GD--------SSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKH 408
G G + P K PE SS +++ P K
Sbjct: 243 GKVGDVTPQVKGGALPPAKRAKKPE---------EESESSEEGSESEEEAPAGTRSQVKA 293
Query: 409 SERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQ-------QESSVPEVPDV 461
SE+ + R A+ P + +PA GK +++SQ + ESS E D
Sbjct: 294 SEKILQV-RAASAPAKGTPGK---GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDS 349
Query: 462 AHLPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRG 521
E+ L ++ S T+ V + S+ E PR P P G+
Sbjct: 350 E----EETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAA-----PAPP------GKT 394
Query: 522 APAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKK 574
PA A GKR+E + E+ D + P Q K K
Sbjct: 395 GPAVA---------------KAQAGKREEDSQSSSEESDSEEEAPAQAKPSGK 432
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 48.5 bits (114), Expect = 3e-05
Identities = 95/428 (22%), Positives = 159/428 (37%), Gaps = 42/428 (9%)
Query: 176 KAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPT 235
K+ A + K S + A S + E+ K P K+E S A V+++ P
Sbjct: 573 KSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKA--KSPVKEEAKSPAEAKSPVKEEAKSPA 630
Query: 236 SSETFGLHVENVPKMVFPQPESTLS-NKRKNNQGNSFQAKRARLNKITGLLAS--KAVGV 292
V++ K P E S K K+ + ++ + + S KA
Sbjct: 631 E-------VKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSP 683
Query: 293 DGAEKKEDYNETAPMLEQAISP-KPQSQKKNEADISSSANT------QKPALLSSTLSSG 345
AE K +P+ E+A SP K +S K EA A + + P S +
Sbjct: 684 VKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEE 743
Query: 346 KARSKKCKHESGDSSGCIKPP--KSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPP 403
+K K + +K P K+P E D + S V + P+ P
Sbjct: 744 AKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPAD-KFPEKAKSPVKEEVKSPEKAKSP 802
Query: 404 --RPFKHSERRRRSQRLATLPMPDDS----VEKVSSPSPATDGKVFSI-SSQNQQESSVP 456
K E+ + P+ ++ V+ P A + K + ++ +++S
Sbjct: 803 LKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKE 862
Query: 457 EVPDVAHLPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAI 516
E P +K P ++ + V P S + E + E ED + +P P +A
Sbjct: 863 EAP-------KKEAPKPKVEEKKEPAVEKPKES----KVEAKKEEAEDKKKVPTPEKEAP 911
Query: 517 ADGRGAPAAAGISKTE-KKVKLEDKSSTAFGKRKEKDKERREKRD-KDHYRPKQKKKKKK 574
A A KTE K + +D + K EK + EK+D K+ K ++K K
Sbjct: 912 AKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKT 971
Query: 575 KKKSKQHD 582
+ K+K+ D
Sbjct: 972 EAKAKEDD 979
Score = 47.0 bits (110), Expect = 9e-05
Identities = 91/443 (20%), Positives = 157/443 (35%), Gaps = 59/443 (13%)
Query: 157 DPAGSCNQSMGSEDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSK-- 214
+ G ++ G E+ A AA+ + + S + A S + E++ K P++
Sbjct: 486 EEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVK 545
Query: 215 ---------KEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSN-KRK 264
KEE + EK+E + V++ K P E S + K
Sbjct: 546 SPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAE------VKSPEKAKSPAKEEAKSPAEAK 599
Query: 265 NNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQAISP-KPQSQKKNE 323
+ + K + K AE K +P E+A SP K +S +K E
Sbjct: 600 SPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKEE 659
Query: 324 ADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQVEDLTLV 383
A A + A S + + K S + KSP + E+
Sbjct: 660 AKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSP 719
Query: 384 SQLSSSVINKTSPPQPVNPP--RPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGK 441
+ S V + P+ P K E+ + ++ TL V SP T K
Sbjct: 720 EKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLD--------VKSPEAKTPAK 771
Query: 442 VFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAE 501
+ S + P+ A P+++ EV +P + S + + E
Sbjct: 772 -------EEARSPADKFPEKAKSPVKE-------------EVKSPEKAKSPLKEDAKAPE 811
Query: 502 KEDTQMLPNPSS-KAIADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRD 560
KE +P K+ P + + KK + E+K+ ++KD ++ E
Sbjct: 812 KE----IPKKEEVKSPVKEEEKPQEVKVKEPPKKAE-EEKAPATPKTEEKKDSKKEEAPK 866
Query: 561 KDHYRPKQKKKK----KKKKKSK 579
K+ +PK ++KK +K K+SK
Sbjct: 867 KEAPKPKVEEKKEPAVEKPKESK 889
Score = 45.4 bits (106), Expect = 3e-04
Identities = 94/450 (20%), Positives = 151/450 (33%), Gaps = 41/450 (9%)
Query: 138 EDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAAAAAKNKTGSKPRTSANS 197
E+AK +++ P P+ S VK A + A+ K+ P + +
Sbjct: 590 EEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSP-----VKEEAKSPAEVKS---PEKAKSP 641
Query: 198 NKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSET-FGLHVENVPKMVFPQPE 256
K++ K K K P K+E S A V+ + P +++ ++ K P E
Sbjct: 642 TKEEAKSPEK-AKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKE 700
Query: 257 STLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQAISPKP 316
S ++ + +AK KA E K +P+ E+A SP+
Sbjct: 701 EAKSPEKAKSPVKE-EAKSPE----------KAKSPVKEEAKTPEKAKSPVKEEAKSPEK 749
Query: 317 QSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQ 376
+ + + K S +K K + + KSPL +
Sbjct: 750 AKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKA 809
Query: 377 VEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLATLPMPDDSVE---KVSS 433
E + S + + PQ V P K +E + T D E K +
Sbjct: 810 PEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEA 869
Query: 434 PSPATDGK---VFSISSQNQQESSVPEVPDVAHLPL-EKLGPCLPLDLSRGSEVTAPVAS 489
P P + K +++ E+ E D +P EK P V
Sbjct: 870 PKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPA-----------KVEVKE 918
Query: 490 DSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRK 549
D+ + + A+KE SK AP +K EK K E+K T K K
Sbjct: 919 DAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKD-TKEEKAKKPEEKPKTE-AKAK 976
Query: 550 EKDKERREKRDKDHYRPKQKKKKKKKKKSK 579
E DK ++ K +K +K SK
Sbjct: 977 EDDKTLSKEPSKPKAEKAEKSSSTDQKDSK 1006
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 47.8 bits (112), Expect = 5e-05
Identities = 93/481 (19%), Positives = 164/481 (34%), Gaps = 47/481 (9%)
Query: 140 AKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAAAAAKNKTGSKPRTSANSNK 199
+K Q P ++ P+D S + SE + ++ + + T KP + A+ K
Sbjct: 244 SKSNSMLQKPTAYVRPMDGQESMEPKLSSEHY------SSQSHGNSMTELKPSSKAHLTK 297
Query: 200 DKDKDERKWFKVPSKKEETS-----TCIATPDVEKKEDLPTSSETFGLHVENVP-KMVFP 253
K+PS+ + S +C+ E P + P K FP
Sbjct: 298 ---------LKIPSQPLDASASGDVSCVDEILKEMTHSWPPPLTAIHTPCKTEPSKFPFP 348
Query: 254 QPESTLSNKRKNNQGNSFQAKRARLNKITGLLAS--KAVGVDGAEKKEDYNETAPMLEQA 311
ES SN Q +K + ++ +L K + ++ ++D ++T P
Sbjct: 349 TKESQQSNFGTGEQKRYNPSKTSNGHQSKSMLKDDLKLSSSEDSDGEQDCDKTMPRSTPG 408
Query: 312 ISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLS 371
+ +P AD S ++ SS+ S ++ S E+ + S P P
Sbjct: 409 SNSEPSHHNSEGADNSRDDSSSHSGSESSSGSDSESESSSSDSEANEPSQSASPEPEPPP 468
Query: 372 PELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRR-RSQRLATLPMPDDSVEK 430
Q+++ L+ +K SP V+ P ++ R Q ++
Sbjct: 469 TNKWQLDNW-----LNKVNPHKVSPASSVDSNIPSSQGYKKEGREQGTGNSYTDTSGPKE 523
Query: 431 VSSPSPATDGKVF---SISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRGSEVTAPV 487
SS +P D K S S + +Q+S + K P + +E A
Sbjct: 524 TSSATPGRDSKTIQKGSESGRGRQKSPAQSDSTTQRRTVGKKQP-------KKAEKAAAE 576
Query: 488 ASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKT-------EKKVKLEDK 540
+ E + +P+ KA G P SK+ +KK K K
Sbjct: 577 EPRGGLKIES-ETPVDLASSMPSSRHKAATKGSRKPNIKKESKSSPRPTAEKKKYKSTSK 635
Query: 541 SSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSP 600
SS + E D + + + P + K + S E+ F +R SP
Sbjct: 636 SSQKSREIIETDTSSSDSDESESLPPSSQTPKYPESNRTPVKPSSVEEEDSFFRQRMFSP 695
Query: 601 L 601
+
Sbjct: 696 M 696
Score = 42.0 bits (97), Expect = 0.003
Identities = 83/383 (21%), Positives = 137/383 (35%), Gaps = 64/383 (16%)
Query: 134 KAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAAAAAKNKTGSKPRT 193
KA E+ +G +K + P+D A S M S A K + K ++ S PR
Sbjct: 572 KAAAEEPRGGLKIESET----PVDLASS----MPSSRHKAATKGSRKPNIKKESKSSPRP 623
Query: 194 SANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFP 253
+A K K + +E T ++ D ++ E LP SS+T PK +P
Sbjct: 624 TAEKKKYKSTSKSS----QKSREIIETDTSSSDSDESESLPPSSQT--------PK--YP 669
Query: 254 QPESTLSNKRKNNQGNSFQAKRA------------------RLNKITGLLASKAVGVDGA 295
+ T + +SF +R R I + + + G
Sbjct: 670 ESNRTPVKPSSVEEEDSFFRQRMFSPMEEKELLSPLSEPDDRYPLIVKIDLNLLTRIPG- 728
Query: 296 EKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHE 355
+ Y ET P P+ +KKN + +T++ +S S K + +K K+E
Sbjct: 729 ---KPYKETEP---------PKGEKKNVPE----KHTREAQKQASEKVSNKGK-RKHKNE 771
Query: 356 SGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNP-----PRPFKHSE 410
+ + K PK+ S S+ K P P P P+ +H
Sbjct: 772 DDNRASESKKPKTEDKNSAGHKPSSNRESSKQSAAKEKDLLPSPAGPVPSKDPKT-EHGS 830
Query: 411 RRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLG 470
R+R + ++L +S ++ S S + ++ + SS EV + A
Sbjct: 831 RKRTISQSSSLKSSSNSNKETSGSSKNSSSTSKQKKTEGKTSSSSKEVKEKAPSSSSNCP 890
Query: 471 PCLPLDLSRGSEVTAPVASDSSY 493
P P S T V D +Y
Sbjct: 891 PSAPTLDSSKPRRTKLVFDDRNY 913
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 47.0 bits (110), Expect = 9e-05
Identities = 90/431 (20%), Positives = 162/431 (37%), Gaps = 47/431 (10%)
Query: 168 SEDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFK--VPSKKEETSTCIATP 225
SE + + ++ + G+ P TS S + K K K +P ++ T ++
Sbjct: 1085 SEAQPPVARTQPSSGVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLPEVQQATKAPESSD 1144
Query: 226 DVEKKEDLPTSSETFGLHVENVPKM--VFPQPESTLSNKRKNNQGNSFQAKRARLNKITG 283
D E D + SE G + + P P T + + +S A +
Sbjct: 1145 DSEDSSDSSSGSEEDGEGPQGAKSAHTLGPTPSRTETLVEETAAESSEDDVVAPSQSL-- 1202
Query: 284 LLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLS 343
L G+ A + ++ P L+ + S K++ D A Q+ A + S +
Sbjct: 1203 LSGYMTPGLTPANSQA--SKATPKLDSSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKT 1260
Query: 344 SGKARSKKCKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPP 403
GK + + KP K +P Q L L S ++ ++ + P
Sbjct: 1261 GGKEAASGTTPQKSR-----KPKKGAGNP---QASTLALQSNITQCLLGQ---------P 1303
Query: 404 RPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAH 463
P ++ + ++ T + + +KV + + K + S + + P
Sbjct: 1304 WPLNEAQVQASVVKVLT-ELLEQERKKVVDTTKESSRKGWE-SRKRKLSGDQPAARTPRS 1361
Query: 464 LPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKED-------TQMLPNPSSKAI 516
+KLG + S E T+ + + R++ KE +Q + + +
Sbjct: 1362 KKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEEL 1421
Query: 517 ADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDK-------DHYRPKQK 569
G G G ++ K K E K S +++KDKE++EK+ K D P QK
Sbjct: 1422 QKGMGT--VEGGDQSNPKSKKEKKKSD----KRKKDKEKKEKKKKAKKASTKDSESPSQK 1475
Query: 570 KKKKKKKKSKQ 580
KKKKKKK ++Q
Sbjct: 1476 KKKKKKKTAEQ 1486
Score = 37.7 bits (86), Expect = 0.055
Identities = 82/413 (19%), Positives = 144/413 (34%), Gaps = 66/413 (15%)
Query: 179 AAAAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEK--KEDLPTS 236
AA AK S P +++ S++++++ E + K + T++ + D+ KE
Sbjct: 69 AALQAKKTRVSDPISTSESSEEEEEAEAETAKATPRLASTNSSVLGADLPSSMKEKAKAE 128
Query: 237 SETFGLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAE 296
+E G ++P P T++N A ++ +V GA
Sbjct: 129 TEKAGKTGNSMPH---PATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAA 185
Query: 297 KKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHES 356
K + S + S +E D+ + + + +S++S+ ++ ++K
Sbjct: 186 AKPGMVSAG---QADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP 242
Query: 357 GD--------SSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKH 408
G G + P K PE SS +++ P K
Sbjct: 243 GKVGDVTPQVKGGALPPAKRAKKPE---------EESESSEEGSESEEEAPAGTRSQVKA 293
Query: 409 SERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQ-------QESSVPEVPDV 461
SE+ + R A+ P + +PA GK +++SQ + ESS E D
Sbjct: 294 SEKILQV-RAASAPAKGTPGK---GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDS 349
Query: 462 AHLPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRG 521
E+ L ++ S T+ V + S+ E PR P P G+
Sbjct: 350 E----EETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAA-----PAPP------GKT 394
Query: 522 APAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKK 574
PA A GKR+E + E+ D + P Q K K
Sbjct: 395 GPAVA---------------KAQAGKREEDSQSSSEESDSEEEAPAQAKPSGK 432
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 47.0 bits (110), Expect = 9e-05
Identities = 90/431 (20%), Positives = 162/431 (37%), Gaps = 47/431 (10%)
Query: 168 SEDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFK--VPSKKEETSTCIATP 225
SE + + ++ + G+ P TS S + K K K +P ++ T ++
Sbjct: 1008 SEAQPPVARTQPSSGVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLPEVQQATKAPESSD 1067
Query: 226 DVEKKEDLPTSSETFGLHVENVPKM--VFPQPESTLSNKRKNNQGNSFQAKRARLNKITG 283
D E D + SE G + + P P T + + +S A +
Sbjct: 1068 DSEDSSDSSSGSEEDGEGPQGAKSAHTLGPTPSRTETLVEETAAESSEDDVVAPSQSL-- 1125
Query: 284 LLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLS 343
L G+ A + ++ P L+ + S K++ D A Q+ A + S +
Sbjct: 1126 LSGYMTPGLTPANSQA--SKATPKLDSSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKT 1183
Query: 344 SGKARSKKCKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPP 403
GK + + KP K +P Q L L S ++ ++ + P
Sbjct: 1184 GGKEAASGTTPQKSR-----KPKKGAGNP---QASTLALQSNITQCLLGQ---------P 1226
Query: 404 RPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAH 463
P ++ + ++ T + + +KV + + K + S + + P
Sbjct: 1227 WPLNEAQVQASVVKVLT-ELLEQERKKVVDTTKESSRKGWE-SRKRKLSGDQPAARTPRS 1284
Query: 464 LPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKED-------TQMLPNPSSKAI 516
+KLG + S E T+ + + R++ KE +Q + + +
Sbjct: 1285 KKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEEL 1344
Query: 517 ADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDK-------DHYRPKQK 569
G G G ++ K K E K S +++KDKE++EK+ K D P QK
Sbjct: 1345 QKGMGT--VEGGDQSNPKSKKEKKKSD----KRKKDKEKKEKKKKAKKASTKDSESPSQK 1398
Query: 570 KKKKKKKKSKQ 580
KKKKKKK ++Q
Sbjct: 1399 KKKKKKKTAEQ 1409
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
sapiens]
Length = 1450
Score = 46.6 bits (109), Expect = 1e-04
Identities = 89/419 (21%), Positives = 157/419 (37%), Gaps = 47/419 (11%)
Query: 180 AAAAKNKTGSKPRTSANSNKDKDKDERKWFK--VPSKKEETSTCIATPDVEKKEDLPTSS 237
A + G+ P TS S + K K K +P ++ T ++ D E D + S
Sbjct: 1059 ATQVDSAVGTLPATSPQSTSVQAKGTNKLRKPKLPEVQQATKAPESSDDSEDSSDSSSGS 1118
Query: 238 ETFGLHVENVPKM--VFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGA 295
E G + + P P T + + +S A + L G+ A
Sbjct: 1119 EEDGEGPQGAKSAHTLGPTPSRTETLVEETAAESSEDDVVAPSQSL--LSGYMTPGLTPA 1176
Query: 296 EKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHE 355
+ ++ P L+ + S K++ D A Q+ A + S + GK + +
Sbjct: 1177 NSQA--SKATPKLDSSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQ 1234
Query: 356 SGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRS 415
KP K +P Q L L S ++ ++ + P P ++ +
Sbjct: 1235 KSR-----KPKKGAGNP---QASTLALQSNITQCLLGQ---------PWPLNEAQVQASV 1277
Query: 416 QRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPL 475
++ T + + +KV + + K + S + + P +KLG
Sbjct: 1278 VKVLT-ELLEQERKKVVDTTKESSRKGWE-SRKRKLSGDQPAARTPRSKKKKKLGAGEGG 1335
Query: 476 DLSRGSEVTAPVASDSSYRNECPRAEKED-------TQMLPNPSSKAIADGRGAPAAAGI 528
+ S E T+ + + R++ KE +Q + + + G G G
Sbjct: 1336 EASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGT--VEGG 1393
Query: 529 SKTEKKVKLEDKSSTAFGKRKEKDKERREKRDK-------DHYRPKQKKKKKKKKKSKQ 580
++ K K E K S +++KDKE++EK+ K D P QKKKKKKKK ++Q
Sbjct: 1394 DQSNPKSKKEKKKSD----KRKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKKKTAEQ 1448
Score = 37.7 bits (86), Expect = 0.055
Identities = 82/413 (19%), Positives = 144/413 (34%), Gaps = 66/413 (15%)
Query: 179 AAAAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEK--KEDLPTS 236
AA AK S P +++ S++++++ E + K + T++ + D+ KE
Sbjct: 69 AALQAKKTRVSDPISTSESSEEEEEAEAETAKATPRLASTNSSVLGADLPSSMKEKAKAE 128
Query: 237 SETFGLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAE 296
+E G ++P P T++N A ++ +V GA
Sbjct: 129 TEKAGKTGNSMPH---PATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAA 185
Query: 297 KKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHES 356
K + S + S +E D+ + + + +S++S+ ++ ++K
Sbjct: 186 AKPGMVSAG---QADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP 242
Query: 357 GD--------SSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKH 408
G G + P K PE SS +++ P K
Sbjct: 243 GKVGDVTPQVKGGALPPAKRAKKPE---------EESESSEEGSESEEEAPAGTRSQVKA 293
Query: 409 SERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQ-------QESSVPEVPDV 461
SE+ + R A+ P + +PA GK +++SQ + ESS E D
Sbjct: 294 SEKILQV-RAASAPAKGTPGK---GATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDS 349
Query: 462 AHLPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRG 521
E+ L ++ S T+ V + S+ E PR P P G+
Sbjct: 350 E----EETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAA-----PAPP------GKT 394
Query: 522 APAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKK 574
PA A GKR+E + E+ D + P Q K K
Sbjct: 395 GPAVA---------------KAQAGKREEDSQSSSEESDSEEEAPAQAKPSGK 432
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 45.8 bits (107), Expect = 2e-04
Identities = 100/469 (21%), Positives = 178/469 (37%), Gaps = 77/469 (16%)
Query: 190 KPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPK 249
K S KD E K +E++ + T + +KE + +S E +H ++ P
Sbjct: 569 KVALSKKRKKDSRNVEENSKKKQQYEEDSKETLKTSEHCEKEKISSSKELKHVHAKSEPS 628
Query: 250 MVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLE 309
+P LS N ++K R +K S V ++G +++ D + +E
Sbjct: 629 ----KPARRLSESLHVVDENKNESKLEREHKRR---TSTPVIMEGVQEETDTRDVKRQVE 681
Query: 310 QA--ISPKPQSQK---KNEADISS--SANTQKPALLSSTLSSGKARSKK----------- 351
++ + +PQ QK KNE + S +LL + S K + ++
Sbjct: 682 RSEICTEEPQKQKSTLKNEKHLKKDDSETPHLKSLLKKEVKSSKEKPEREKTPSEDKLSV 741
Query: 352 -------CKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPR 404
C H++GD + K E IQ + Q S +KT R
Sbjct: 742 KHKYKGDCMHKTGDETELHSSEKGLKVEENIQKQS----QQTKLSSDDKTE--------R 789
Query: 405 PFKHSERRRRSQRLATL-----PMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVP 459
KH R ++L+ L P+ + ++ + + K +S++ +
Sbjct: 790 KSKH----RNERKLSVLGKDGKPVSEYIIKTDENVRKENNKKERRLSAEKTKAEHKSRRS 845
Query: 460 DVAHLPLEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADG 519
+ + + LG S+ +T S+S ++C + + T M N + +
Sbjct: 846 SDSKIQKDSLG-------SKQHGITLQRRSESYSEDKC---DMDSTNMDSNLKPEEVVHK 895
Query: 520 RGAPAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKK------- 572
S E+K+ L+ KS T + K + E +E K PK K+K
Sbjct: 896 EKRRTK---SLLEEKLVLKSKSKTQGKQVKVVETELQEGATKQATTPKPDKEKNTEENDS 952
Query: 573 KKKKKSKQHDYSDYEDSSLE-FLERCSSPL--TRSSGSSLASRSMFTEK 618
+K++KSK D +E++ +E LE SS T+ S A + EK
Sbjct: 953 EKQRKSKVED-KPFEETGVEPVLETASSSAHSTQKDSSHRAKLPLAKEK 1000
Score = 37.7 bits (86), Expect = 0.055
Identities = 63/311 (20%), Positives = 113/311 (36%), Gaps = 35/311 (11%)
Query: 382 LVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLATLP---MPDDSVEKVSSPSPAT 438
++SQ+ IN T PQ F + + T P PD S+ P+P
Sbjct: 134 IISQVVDPKINHTFRPQVEKAVHEFLATLNHKEEGSGNTAPDDEKPDTSLITQGVPTPGP 193
Query: 439 DGKVFS--------ISSQNQQESSVPEVPDVAHLPL-EKLGPCLPLDLSRGSEVTAPVAS 489
V + I+S NQ+ S+ + ++ E+ LP + + S
Sbjct: 194 SANVANDAMSILETITSLNQEASAARASTETSNAKTSERASKKLPSQPTTDTSTDKERTS 253
Query: 490 DSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKK-----VKLEDKSSTA 544
+ E A+ + P S+ +D P K K + L
Sbjct: 254 EDMADKEKSTADSGGEGLETAPKSEEFSD---LPCPVEEIKNYTKEHNNLILLNKDVQQE 310
Query: 545 FGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSPLTRS 604
++K K ++ EK+ + + ++KK+KK+K + K+ D+S + + + + +
Sbjct: 311 SSEQKNKSTDKGEKKPDSNEKGERKKEKKEKTE-KKFDHSKKSEDTQKVKDEKQAKEKEV 369
Query: 605 SGSSLASRSMFTEKTTTYQYPRAILSVDLSGENLSDVDFLDDSSTESLLLSGDEYNQDFD 664
L S + T +D SDVD L D + S+ S D
Sbjct: 370 ESLKLPSEKNSNKAKTVEGTKEDFSLID------SDVDGLTDITVSSVHTS--------D 415
Query: 665 STNFEESQDED 675
++FEE +E+
Sbjct: 416 LSSFEEDTEEE 426
Score = 37.7 bits (86), Expect = 0.055
Identities = 79/393 (20%), Positives = 144/393 (36%), Gaps = 56/393 (14%)
Query: 257 STLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQAISPKP 316
+TL++K + + + ++ + IT + + + A ET L Q S
Sbjct: 160 ATLNHKEEGSGNTAPDDEKPDTSLITQGVPTPGPSANVANDAMSILETITSLNQEASAAR 219
Query: 317 QSQKKNEADISSSANTQKPALLSSTLSSGKARS-------KKCKHESGDSSGCIKPPKSP 369
S + + A S A+ + P+ ++ S+ K R+ +K +SG P
Sbjct: 220 ASTETSNAKTSERASKKLPSQPTTDTSTDKERTSEDMADKEKSTADSGGEGLETAPKSEE 279
Query: 370 LSPELIQVEDLTL--------------VSQLSSSVINKTSPPQPVNPP------------ 403
S VE++ V Q SS NK++ P
Sbjct: 280 FSDLPCPVEEIKNYTKEHNNLILLNKDVQQESSEQKNKSTDKGEKKPDSNEKGERKKEKK 339
Query: 404 ----RPFKHSERRRRSQRLATLPMPDDS-VEKVSSPSPATDGKVFSISSQNQQESSVPEV 458
+ F HS++ +Q++ + VE + PS K ++ + S +
Sbjct: 340 EKTEKKFDHSKKSEDTQKVKDEKQAKEKEVESLKLPSEKNSNKAKTVEGTKEDFSLIDS- 398
Query: 459 PDVAHLPLEKLGPCLPLDLSRGSEVTAP--VASDSSYRNECPRAEKE-DTQMLPNPSSKA 515
DV L + DLS E T V SDS E ++E + Q +
Sbjct: 399 -DVDGLTDITVSSVHTSDLSSFEEDTEEEVVTSDSMEEGEITSDDEEKNKQNKTKTQTSD 457
Query: 516 IADGRGAPAAAGI-----------SKTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHY 564
++G+ S ++ ++ +E + + +++E+ R+ R+K
Sbjct: 458 SSEGKTKSVRHAYVHKPYLYSKYYSDSDDELTVEQRRQSIAKEKEERLLRRQINREKLEE 517
Query: 565 RPKQKKKKKKKKKSKQHDYS--DYEDSSLEFLE 595
+ KQK +K K K+K S D E+SS + LE
Sbjct: 518 KRKQKAEKTKSSKTKGQGRSSVDLEESSTKSLE 550
Score = 34.3 bits (77), Expect = 0.61
Identities = 86/431 (19%), Positives = 153/431 (35%), Gaps = 49/431 (11%)
Query: 270 SFQAKRARLNKITG--LLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADIS 327
S + K AR+ ++ + K V + KK+ N +E+ K Q ++ ++ +
Sbjct: 548 SLEPKAARIKEVLKERKVLEKKVALSKKRKKDSRN-----VEENSKKKQQYEEDSKETLK 602
Query: 328 SSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLS 387
+S + +K + SS K+ KH S P LS L V++ S+L
Sbjct: 603 TSEHCEKEKISSS---------KELKHVHAKSEP--SKPARRLSESLHVVDENKNESKLE 651
Query: 388 SSVINKTSPP---QPVNPPRPFKHSERR-RRSQRLATLPMPDDSVEKVSSPSPATDGKVF 443
+TS P + V + +R+ RS+ P S K D +
Sbjct: 652 REHKRRTSTPVIMEGVQEETDTRDVKRQVERSEICTEEPQKQKSTLKNEKHLKKDDSETP 711
Query: 444 SISSQNQQE-SSVPEVPDVAHLPLE---------------KLGPCLPLDLS-RGSEVTAP 486
+ S ++E S E P+ P E K G L S +G +V
Sbjct: 712 HLKSLLKKEVKSSKEKPEREKTPSEDKLSVKHKYKGDCMHKTGDETELHSSEKGLKVEEN 771
Query: 487 VASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDKSSTAFG 546
+ S + E N ++ G P + I KT++ V+ E+
Sbjct: 772 IQKQSQQTKLSSDDKTERKSKHRNERKLSVLGKDGKPVSEYIIKTDENVRKENNKKE--- 828
Query: 547 KRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSPLTRSSG 606
+R +K + E + + R K +K SKQH + S ++C T
Sbjct: 829 RRLSAEKTKAEHKSR---RSSDSKIQKDSLGSKQHGITLQRRSESYSEDKCDMDSTNMDS 885
Query: 607 SSLASRSMFTEKTTTYQYPRAILSVDLSGENLSDVDFLDDSSTESLLLSGDEYNQDFDST 666
+ + EK T +++L L ++ S E+ L G
Sbjct: 886 NLKPEEVVHKEKRRT----KSLLEEKLVLKSKSKTQGKQVKVVETELQEGATKQATTPKP 941
Query: 667 NFEESQDEDDA 677
+ E++ +E+D+
Sbjct: 942 DKEKNTEENDS 952
Score = 30.8 bits (68), Expect = 6.8
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 840 QNHKEPPRLPLKMEGTYITSEHSYQKPQSFGQDCKSLADPGSSDDDDVSSLEEEQEFHMR 899
+N ++ LP T T+ ++ + + P +DDD + S EE+Q ++
Sbjct: 2813 ENSRDLEELPKTSSETNSTTSRVMEEKDEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIK 2872
Query: 900 SKNSLQYSAKEHGMPEKNPAEGNTVFVYNDKK 931
K G P K P E T+ + +D K
Sbjct: 2873 RK---------RGRPRKYPVE-TTLKMKDDSK 2894
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 44.7 bits (104), Expect = 5e-04
Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 55/333 (16%)
Query: 409 SERRRRSQRLATLPMPDDSV-EKVSSPSPATDGKVFSISSQNQQESSVPEV--PDVAHLP 465
S +RR +Q T P P S ++ +P AT + + + + S+ ++ P VA
Sbjct: 96 SSKRRAAQAGPTQPGPPRSTFSRLQAPDSAT------LLEKMKLKDSLFDLDGPKVA--- 146
Query: 466 LEKLGPCLPLDLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAA 525
L P SR PV + PR + + L G GA A
Sbjct: 147 -SPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRKKDRKNRKL----------GPGAGAG 195
Query: 526 AGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRDK-DHYRPKQKKKKKKKKKSKQHDYS 584
G+ + + + + + K K++ ++ E+ D+ P Q + ++ +
Sbjct: 196 FGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQAPPSDTDSEEEEEEEE 255
Query: 585 DYEDSSLEFLERCSSPLTRSSGSSLASRSMFTEKTTTYQYPRAILSVDLSGENLSDVDFL 644
+ E+ + + +P+ T + PR +V G +D +
Sbjct: 256 EEEEEEMATVVGGEAPVP--------------VLPTPPEAPRPPATVHPEGVPPADSESK 301
Query: 645 DDSSTESLLLSGDEYNQDFDSTNFEESQ---DED------DALNEIVRCICEMDEENGFM 695
+ STE+ +QD D+++ E DED D +++ C C M
Sbjct: 302 EVGSTET--------SQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPM 353
Query: 696 IQCEECLCWQHSVCMGLLEESIPEQYICYICRD 728
I+C C W H C + + ++P+ + C C++
Sbjct: 354 IECSLCGTWIHLSCAKIKKTNVPDFFYCQKCKE 386
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 44.7 bits (104), Expect = 5e-04
Identities = 45/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)
Query: 400 VNPPRPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVP 459
+ P + K E++ RS+ ++ S + SS S +S SS + + SS P
Sbjct: 493 LEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSP 552
Query: 460 DVAHLPLEKLGPCLPLDLSRGSEVTAPVASDS------------SYRNECPRAEKEDTQM 507
P + SR + + +S S RN R + +
Sbjct: 553 KRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSP 612
Query: 508 LPNPSSKAIADGRGAPAAAGISKTEKKVKLEDKSSTAFG---------KRKEKDKER--- 555
A S++ + K++D+ G K +E+ KER
Sbjct: 613 SRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKERSRS 672
Query: 556 ----REKRDKDHYRPKQKKKKKKKKKSKQHDYSDYED 588
R+K+DK+ R + K+K+K+K++ K +S +D
Sbjct: 673 IDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDD 709
Score = 31.6 bits (70), Expect = 4.0
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 256 ESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQAISPK 315
E +R + N F K N ++ L A +A G EKK NET +LE K
Sbjct: 443 EEKQQTERVTKEMNEFIHKEQ--NSLSLLEAREADGDVVNEKKRTPNETTSVLEPKKEHK 500
Query: 316 -PQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPK 367
+ Q ++ + SSS ++ + SST S+ + S S +S PK
Sbjct: 501 EKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPK 553
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 44.7 bits (104), Expect = 5e-04
Identities = 45/217 (20%), Positives = 81/217 (37%), Gaps = 28/217 (12%)
Query: 400 VNPPRPFKHSERRRRSQRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVP 459
+ P + K E++ RS+ ++ S + SS S +S SS + + SS P
Sbjct: 493 LEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSP 552
Query: 460 DVAHLPLEKLGPCLPLDLSRGSEVTAPVASDS------------SYRNECPRAEKEDTQM 507
P + SR + + +S S RN R + +
Sbjct: 553 KRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSP 612
Query: 508 LPNPSSKAIADGRGAPAAAGISKTEKKVKLEDKSSTAFG---------KRKEKDKER--- 555
A S++ + K++D+ G K +E+ KER
Sbjct: 613 SRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKERSRS 672
Query: 556 ----REKRDKDHYRPKQKKKKKKKKKSKQHDYSDYED 588
R+K+DK+ R + K+K+K+K++ K +S +D
Sbjct: 673 IDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDD 709
Score = 31.6 bits (70), Expect = 4.0
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 256 ESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQAISPK 315
E +R + N F K N ++ L A +A G EKK NET +LE K
Sbjct: 443 EEKQQTERVTKEMNEFIHKEQ--NSLSLLEAREADGDVVNEKKRTPNETTSVLEPKKEHK 500
Query: 316 -PQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPK 367
+ Q ++ + SSS ++ + SST S+ + S S +S PK
Sbjct: 501 EKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPK 553
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 43.9 bits (102), Expect = 8e-04
Identities = 18/48 (37%), Positives = 35/48 (72%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKK 577
K +KK K ++ KRKE++K+R+E+R+K+ + K++KKK+++K+
Sbjct: 61 KEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEKKKRERKQ 108
Score = 42.4 bits (98), Expect = 0.002
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 530 KTEKKVKLEDKSSTAFGKRKE--KDKERREKRDKDHYRPKQKKKKKKKKKSKQHD 582
+ KK K E++ RKE K++ER+E+R++ R K+++KKK++KK ++ D
Sbjct: 158 RKRKKRKKEEREKKRERNRKERKKERERKERRERKKERKKERRKKKERKKDRKTD 212
Score = 37.4 bits (85), Expect = 0.072
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQ 580
K K+ + E+K ++K + K+RR++R ++ R K+++K+KK+KK ++
Sbjct: 118 KERKERERENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEER 168
Score = 37.0 bits (84), Expect = 0.094
Identities = 18/53 (33%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHD 582
K EKK K E K G+R+ K K+ R++R++++ + +++K+KK++KK ++ +
Sbjct: 98 KKEKK-KRERKQR---GRRERKKKKERKERERENKQRRERKRKKRRKKKRRKE 146
Score = 35.8 bits (81), Expect = 0.21
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDS 589
K +K+ K ++ +RK+K KER+E+ ++ R ++K+KK++KKK ++ + E
Sbjct: 96 KRKKEKKKRERKQRGRRERKKK-KERKERERENKQRRERKRKKRRKKKRRKERKREKERG 154
Query: 590 SLE 592
E
Sbjct: 155 KRE 157
Score = 35.4 bits (80), Expect = 0.27
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKER-REKRDKDHYRPKQKKKKKKKKKSKQ 580
+ +KK + E K GKR+ K K+R +E+R+K R ++++KK++++K ++
Sbjct: 138 RRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRKERKKERERKERR 189
Score = 35.0 bits (79), Expect = 0.36
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHD 582
K E++ K +++ K +E+ + R K+++ R K+K++KK +K +Q D
Sbjct: 164 KKEEREKKRERNRKERKKERERKERRERKKERKKERRKKKERKKDRKTDRQTD 216
Score = 34.3 bits (77), Expect = 0.61
Identities = 15/34 (44%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Query: 547 KRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQ 580
+R+E++K +RE R+K+ R + KK+KKK+KK ++
Sbjct: 39 ERREREKRKRE-REKERKRERGKKEKKKRKKRER 71
Score = 33.9 bits (76), Expect = 0.80
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 547 KRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHD 582
+ +EK K REK K K+KKK+KK+++ K+ +
Sbjct: 41 REREKRKREREKERKRERGKKEKKKRKKRERGKERE 76
Score = 33.9 bits (76), Expect = 0.80
Identities = 13/53 (24%), Positives = 33/53 (62%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHD 582
+ +KK + E + + +++ K R++KR K+ R K++ K+++K+K ++ +
Sbjct: 114 RKKKKERKERERENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKE 166
Score = 33.9 bits (76), Expect = 0.80
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREK--------RDKDHYRPKQKKKKKKKKKSKQ 580
K K+ K E + KRK++ KE REK R K+ R +++++KK++KK ++
Sbjct: 142 KRRKERKREKERGKRERKRKKRKKEEREKKRERNRKERKKERERKERRERKKERKKERR 200
Score = 33.5 bits (75), Expect = 1.0
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 524 AAAGISKTEKKVKLEDKSSTAFGKRKEKDKERRE----KRDKDHYRPKQKKKKKKKKKSK 579
AA ++ + V S + E+ KERRE KR+++ R +++ KK+KKK+ K
Sbjct: 9 AAVKLNTELQMVSCSHISKPCTQRESERKKERREREKRKREREKERKRERGKKEKKKRKK 68
Query: 580 Q 580
+
Sbjct: 69 R 69
Score = 33.1 bits (74), Expect = 1.4
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 481 SEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDK 540
S ++ P S R + E+ + + K RG K E+ + E K
Sbjct: 23 SHISKPCTQRESERKK----ERREREKRKREREKERKRERGKKEKKKRKKRERGKERERK 78
Query: 541 SSTAFGKRKEK-DKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYED 588
+RKE+ +KERR+++ + R ++++ ++++KK K+ + E+
Sbjct: 79 RKEREKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKEREREN 127
Score = 33.1 bits (74), Expect = 1.4
Identities = 14/50 (28%), Positives = 32/50 (64%)
Query: 532 EKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQH 581
E K + E K K++ K+++R ++R K + K++KK++++KK +++
Sbjct: 126 ENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERN 175
Score = 32.7 bits (73), Expect = 1.8
Identities = 12/53 (22%), Positives = 33/53 (62%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHD 582
+ E+K K K +++EK++ +RE++ K + +++KK+++ +K ++ +
Sbjct: 130 RRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRKERKKE 182
Score = 31.6 bits (70), Expect = 4.0
Identities = 14/67 (20%), Positives = 38/67 (56%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQHDYSDYEDS 589
+ ++K + E + GK+++K +++RE+ + + K+++K++K+++ K+ E
Sbjct: 43 REKRKREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEKK 102
Query: 590 SLEFLER 596
E +R
Sbjct: 103 KRERKQR 109
Score = 31.2 bits (69), Expect = 5.2
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 530 KTEKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKKKKKKKSKQ 580
+ E++ + +++ KRK++ K+R K+ R K+K++K++++++KQ
Sbjct: 79 RKEREKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQ 129
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 43.9 bits (102), Expect = 8e-04
Identities = 82/422 (19%), Positives = 146/422 (34%), Gaps = 48/422 (11%)
Query: 189 SKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVP 248
+K + S++ ++D ++E + P+KK A P K+ LP P
Sbjct: 78 AKKKASSSDSEDSSEEEEEVQGPPAKKA------AVP--AKRVGLP-------------P 116
Query: 249 KMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPML 308
+ + S++ ++ + K+ + K A A K D + +
Sbjct: 117 GKAAAKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSE 176
Query: 309 EQAISPKPQSQKKNEADISSSANTQ---KPALLSSTLSSGKARSKKCKHESGDSSGCIKP 365
++ P++QK ++ A T+ KPA + +++GKA S S SS +
Sbjct: 177 DEP----PKNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEE 232
Query: 366 PKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLATLPMPD 425
K+ +P+ + + + V T+P + + E + + + P P
Sbjct: 233 EKAAATPKKTVPKKQVVA---KAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPY 289
Query: 426 DSVEKVSSPSP----ATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRGS 481
SV S+P P T ++ Q ESS + E+ P +S+ +
Sbjct: 290 SSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKAT 349
Query: 482 EVTAPVA-----------SDSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISK 530
P SDSS +E P T+ N + PAAA
Sbjct: 350 TKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQP 409
Query: 531 TEKKVKLEDKSSTAFGKRKEKDKERREKRDK--DHYRPKQKKKKKKKKKSKQHDYSDYED 588
KL + + + +E EK K +PK K +KQ +
Sbjct: 410 VGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDS 469
Query: 589 SS 590
SS
Sbjct: 470 SS 471
Score = 41.2 bits (95), Expect = 0.005
Identities = 83/431 (19%), Positives = 158/431 (36%), Gaps = 52/431 (12%)
Query: 176 KAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPT 235
K A A K + P ++S++D DE + K P K + P
Sbjct: 245 KKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPG---------------PY 289
Query: 236 SSETFGLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGA 295
SS VP P P+ +L G K + + D +
Sbjct: 290 SS---------VPPPSAPPPKKSL--------GTQPPKKAVEKQQPVESSEDSSDESDSS 332
Query: 296 EKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHE 355
++E T ++ +A + P ++K E+ SS + + + +G ++ K
Sbjct: 333 SEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPA 392
Query: 356 SGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRS 415
S +KP +P P + LT + SSS ++S + + ++ + +
Sbjct: 393 VTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSE-EESSSSEEEKTKKMVATTKPKATA 451
Query: 416 QRLATLPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPL 475
+ +LP +P + D S SS +++E V P + G P
Sbjct: 452 KAALSLPAK-------QAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPS 504
Query: 476 DLSRGSEVTAPVASDSSYRNECPRAEKEDTQMLPNPSSKA-IADGRGAPAA---AGISKT 531
+ + A +S+SS ++ E+E + +P +A A+G A A +
Sbjct: 505 KPASAKKGKAE-SSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNS 563
Query: 532 EKKVKLEDKSSTAFGKRKEKDKERREKRDKDHYRPKQKKKK-------KKKKKSKQHDYS 584
E++ + + K++ K K ++ + K+ P+ KK K K+KK ++ S
Sbjct: 564 EEEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASS 623
Query: 585 DYEDSSLEFLE 595
+ E +E
Sbjct: 624 PFRRVREEEIE 634
>gi|15011902 synaptotagmin-like 2 isoform a [Homo sapiens]
Length = 910
Score = 43.5 bits (101), Expect = 0.001
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 11/241 (4%)
Query: 315 KPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLSPEL 374
K K + ADI ++ +K +++ S + K + + PP+ L+ +
Sbjct: 60 KRHRDKIHGADIIRASMRKKRPQIAAEQSKDRENGAKESWVNNVNKDAFLPPE--LAGVV 117
Query: 375 IQVEDLTLVSQLSSSVINKTSPPQPV---NPPRPFKHSERRRRSQRLATLPMPDDSVEKV 431
+ E+ + SSSV+N S + N +P E+R+ + LP S +
Sbjct: 118 EEPEEDAAPASPSSSVVNPASSVIDMSQENTRKPNVSPEKRKNPFNSSKLPEGHSSQQTK 177
Query: 432 SSPSPATDGKVFSISSQNQQESSVPE--VPDVAHLPLEKLGPCLPLDLSRGSEVTAPVAS 489
+ S +F S +++ S + V D + LEK LP LS GS++ AP+
Sbjct: 178 NEQSKNGRTGLFQTSKEDELSESKEKSTVADTSIQKLEKSKQTLP-GLSNGSQIKAPIPK 236
Query: 490 DSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRK 549
+ K+D Q P + ++ RGAP GI K D + +
Sbjct: 237 ARKMIYKSTDLNKDDNQSFPRQRTDSL-KARGAP--RGILKRNSSSSSTDSETLRYNHNF 293
Query: 550 E 550
E
Sbjct: 294 E 294
>gi|244790013 synaptotagmin-like 2 isoform g [Homo sapiens]
Length = 934
Score = 43.5 bits (101), Expect = 0.001
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 11/241 (4%)
Query: 315 KPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLSPEL 374
K K + ADI ++ +K +++ S + K + + PP+ L+ +
Sbjct: 60 KRHRDKIHGADIIRASMRKKRPQIAAEQSKDRENGAKESWVNNVNKDAFLPPE--LAGVV 117
Query: 375 IQVEDLTLVSQLSSSVINKTSPPQPV---NPPRPFKHSERRRRSQRLATLPMPDDSVEKV 431
+ E+ + SSSV+N S + N +P E+R+ + LP S +
Sbjct: 118 EEPEEDAAPASPSSSVVNPASSVIDMSQENTRKPNVSPEKRKNPFNSSKLPEGHSSQQTK 177
Query: 432 SSPSPATDGKVFSISSQNQQESSVPE--VPDVAHLPLEKLGPCLPLDLSRGSEVTAPVAS 489
+ S +F S +++ S + V D + LEK LP LS GS++ AP+
Sbjct: 178 NEQSKNGRTGLFQTSKEDELSESKEKSTVADTSIQKLEKSKQTLP-GLSNGSQIKAPIPK 236
Query: 490 DSSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRK 549
+ K+D Q P + ++ RGAP GI K D + +
Sbjct: 237 ARKMIYKSTDLNKDDNQSFPRQRTDSL-KARGAP--RGILKRNSSSSSTDSETLRYNHNF 293
Query: 550 E 550
E
Sbjct: 294 E 294
Score = 34.3 bits (77), Expect = 0.61
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 24/155 (15%)
Query: 305 APMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKAR---SKKCKHESGDSSG 361
A L + P+P + + ++P+ + TL AR SK + S DSS
Sbjct: 462 ADELSHCVEPEPSQVPGGSSRDRQQGSEEEPSPVLKTLERSAARKMPSKSLEDISSDSSN 521
Query: 362 CIKPPKSPLSPELIQ-VEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLAT 420
K P EL++ ED++ V P P PF H ++ +R +
Sbjct: 522 QAKVDNQP--EELVRSAEDVSTV---------------PTQPDNPFSHPDKLKRMSKSVP 564
Query: 421 LPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSV 455
+ D+S ++ + + + + +S + SS+
Sbjct: 565 AFLQDESDDRETDTASESS---YQLSRHKKSPSSL 596
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,606,404
Number of Sequences: 37866
Number of extensions: 2309939
Number of successful extensions: 16299
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 485
Number of HSP's that attempted gapping in prelim test: 10275
Number of HSP's gapped (non-prelim): 3776
length of query: 1017
length of database: 18,247,518
effective HSP length: 112
effective length of query: 905
effective length of database: 14,006,526
effective search space: 12675906030
effective search space used: 12675906030
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.