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Search of human proteins with 110815844
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110815844 zinc finger, CCHC domain containing 7 [Homo
sapiens]
(543 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens] 1145 0.0
gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens] 69 8e-12
gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens] 68 2e-11
gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens] 64 5e-10
gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens] 63 6e-10
gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens] 62 1e-09
gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens] 62 1e-09
gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens] 53 8e-07
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 46 8e-05
gi|168229156 NFKB activating protein [Homo sapiens] 43 8e-04
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 42 0.002
gi|239747891 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 40 0.004
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 40 0.004
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 40 0.007
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 39 0.009
gi|13375938 lin-28 homolog [Homo sapiens] 39 0.009
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 39 0.012
gi|19923844 coiled-coil domain containing 82 [Homo sapiens] 39 0.012
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 39 0.012
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 39 0.016
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 38 0.021
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 38 0.027
gi|27883882 P18SRP protein [Homo sapiens] 38 0.027
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 37 0.035
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 37 0.035
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 37 0.035
gi|18375528 UPF3 regulator of nonsense transcripts homolog B iso... 37 0.035
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 37 0.035
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 37 0.046
>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
Length = 543
Score = 1145 bits (2962), Expect = 0.0
Identities = 543/543 (100%), Positives = 543/543 (100%)
Query: 1 MMFGGYETIEAYEDDLYRDESSSELSVDSEVEFQLYSQIHYAQDLDDVIREEEHEEKNSG 60
MMFGGYETIEAYEDDLYRDESSSELSVDSEVEFQLYSQIHYAQDLDDVIREEEHEEKNSG
Sbjct: 1 MMFGGYETIEAYEDDLYRDESSSELSVDSEVEFQLYSQIHYAQDLDDVIREEEHEEKNSG 60
Query: 61 NSESSSSKPNQKKLIVLSDSEVIQLSDGSEVITLSDEDSIYRCKGKNVRVQAQENAHGLS 120
NSESSSSKPNQKKLIVLSDSEVIQLSDGSEVITLSDEDSIYRCKGKNVRVQAQENAHGLS
Sbjct: 61 NSESSSSKPNQKKLIVLSDSEVIQLSDGSEVITLSDEDSIYRCKGKNVRVQAQENAHGLS 120
Query: 121 SSLQSNELVDKKCKSDIEKPKSEERSGVIREVMIIEVSSSEEEESTISEGDNVESWMLLG 180
SSLQSNELVDKKCKSDIEKPKSEERSGVIREVMIIEVSSSEEEESTISEGDNVESWMLLG
Sbjct: 121 SSLQSNELVDKKCKSDIEKPKSEERSGVIREVMIIEVSSSEEEESTISEGDNVESWMLLG 180
Query: 181 CEVDDKDDDILLNLVGCENSVTEGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKN 240
CEVDDKDDDILLNLVGCENSVTEGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKN
Sbjct: 181 CEVDDKDDDILLNLVGCENSVTEGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKN 240
Query: 241 IICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRH 300
IICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRH
Sbjct: 241 IICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRH 300
Query: 301 SWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYG 360
SWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYG
Sbjct: 301 SWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYG 360
Query: 361 HECPEREVYDPSPVSPFICYYDDKYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAAN 420
HECPEREVYDPSPVSPFICYYDDKYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAAN
Sbjct: 361 HECPEREVYDPSPVSPFICYYDDKYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAAN 420
Query: 421 ENPHHDIRKGRASWKSNRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTY 480
ENPHHDIRKGRASWKSNRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTY
Sbjct: 421 ENPHHDIRKGRASWKSNRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTY 480
Query: 481 SSPGSFKTQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRK 540
SSPGSFKTQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRK
Sbjct: 481 SSPGSFKTQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRK 540
Query: 541 KKS 543
KKS
Sbjct: 541 KKS 543
>gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]
Length = 172
Score = 69.3 bits (168), Expect = 8e-12
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 14/145 (9%)
Query: 225 RTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP--- 281
R+ GR Q + S++ IC C + GHL+K+C L V C+ C R GH+ C P
Sbjct: 30 RSRGRGFQ-FVSSSLPDICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKRE 88
Query: 282 ---LCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKP 338
C C P L C H+ +++C C GH CT++ + G
Sbjct: 89 REQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHV 141
Query: 339 KTPSRPSALAYCYHCAQKGHYGHEC 363
++ CY C + GH EC
Sbjct: 142 AINCSKTSEVNCYRCGESGHLAREC 166
Score = 33.9 bits (76), Expect = 0.39
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 265 CFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHY--------- 315
CF C R GH CP + S C RC GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 316 TDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHEC 363
+AC R H+ PK+ + CY+C + GH +C
Sbjct: 66 VEACYNCGRGGHIAKDCKEPKREREQC-------CYNCGKPGHLARDC 106
>gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens]
Length = 179
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 233 RYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP------LCEYC 286
++ S++ IC C + GHL+K+C L V C+ C R GH+ C P C C
Sbjct: 44 QFVSSSLPDICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNC 103
Query: 287 PVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSA 346
P L C H+ +++C C GH CT++ + G ++
Sbjct: 104 GKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHVAINCSKTS 156
Query: 347 LAYCYHCAQKGHYGHEC 363
CY C + GH EC
Sbjct: 157 EVNCYRCGESGHLAREC 173
>gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]
Length = 171
Score = 63.5 bits (153), Expect = 5e-10
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 225 RTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP--- 281
R+ GR Q + S++ IC C + GHL+K+C L ++ C+ C R GH+ C P
Sbjct: 30 RSRGRGFQ-FVSSSLPDICYRCGESGHLAKDCDL-QEDEACYNCGRGGHIAKDCKEPKRE 87
Query: 282 ---LCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKP 338
C C P L C H+ +++C C GH CT++ + G
Sbjct: 88 REQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHV 140
Query: 339 KTPSRPSALAYCYHCAQKGHYGHEC 363
++ CY C + GH EC
Sbjct: 141 AINCSKTSEVNCYRCGESGHLAREC 165
Score = 34.3 bits (77), Expect = 0.30
Identities = 26/107 (24%), Positives = 34/107 (31%), Gaps = 15/107 (14%)
Query: 265 CFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYT-------- 316
CF C R GH CP + S C RC GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 317 DACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHEC 363
+AC R H+ PK+ + CY+C + GH +C
Sbjct: 66 EACYNCGRGGHIAKDCKEPKREREQC-------CYNCGKPGHLARDC 105
>gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]
Length = 170
Score = 63.2 bits (152), Expect = 6e-10
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 225 RTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP--- 281
R+ GR Q + S++ IC C + GHL+K+C L C+ C R GH+ C P
Sbjct: 30 RSRGRGFQ-FVSSSLPDICYRCGESGHLAKDCDLQEDA--CYNCGRGGHIAKDCKEPKRE 86
Query: 282 ---LCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKP 338
C C P L C H+ +++C C GH CT++ + G
Sbjct: 87 REQCCYNCGKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHV 139
Query: 339 KTPSRPSALAYCYHCAQKGHYGHEC 363
++ CY C + GH EC
Sbjct: 140 AINCSKTSEVNCYRCGESGHLAREC 164
Score = 36.2 bits (82), Expect = 0.079
Identities = 27/106 (25%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 265 CFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYT-------D 317
CF C R GH CP + S C RC GH D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 318 ACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHEC 363
AC R H+ PK+ + CY+C + GH +C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQC-------CYNCGKPGHLARDC 104
>gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]
Length = 178
Score = 62.4 bits (150), Expect = 1e-09
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 233 RYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP------LCEYC 286
++ S++ IC C + GHL+K+C L ++ C+ C R GH+ C P C C
Sbjct: 44 QFVSSSLPDICYRCGESGHLAKDCDL-QEDEACYNCGRGGHIAKDCKEPKREREQCCYNC 102
Query: 287 PVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSA 346
P L C H+ +++C C GH CT++ + G ++
Sbjct: 103 GKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHVAINCSKTS 155
Query: 347 LAYCYHCAQKGHYGHEC 363
CY C + GH EC
Sbjct: 156 EVNCYRCGESGHLAREC 172
>gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens]
Length = 177
Score = 62.0 bits (149), Expect = 1e-09
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 233 RYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP------LCEYC 286
++ S++ IC C + GHL+K+C L C+ C R GH+ C P C C
Sbjct: 44 QFVSSSLPDICYRCGESGHLAKDCDLQEDA--CYNCGRGGHIAKDCKEPKREREQCCYNC 101
Query: 287 PVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSA 346
P L C H+ +++C C GH CT++ + G ++
Sbjct: 102 GKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHVAINCSKTS 154
Query: 347 LAYCYHCAQKGHYGHEC 363
CY C + GH EC
Sbjct: 155 EVNCYRCGESGHLAREC 171
>gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]
Length = 166
Score = 52.8 bits (125), Expect = 8e-07
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 242 ICRNCDKRGHLSKNCPLPRKVRR--CFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFR 299
IC NC + GH++K+C P++ RR C+ C R GHL C + C L H + +
Sbjct: 66 ICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH--IQK 123
Query: 300 HSWDKQCDRCHMLGHYTDACTE 321
+C RC +GH C++
Sbjct: 124 DCAQVKCYRCGEIGHVAINCSK 145
Score = 38.1 bits (87), Expect = 0.021
Identities = 30/134 (22%), Positives = 43/134 (32%), Gaps = 42/134 (31%)
Query: 236 SANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHS 295
S + C C + G +KNC L + C+ C R GH+ C P
Sbjct: 40 STTLSYTCYCCGESGRNAKNCVLLGNI--CYNCGRSGHIAKDCKDP-------------- 83
Query: 296 CLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQ 355
+ + C C LGH C K+ K CY C +
Sbjct: 84 ---KRERRQHCYTCGRLGHLARDCDR-------------QKEQK----------CYSCGK 117
Query: 356 KGHYGHECPEREVY 369
GH +C + + Y
Sbjct: 118 LGHIQKDCAQVKCY 131
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 46.2 bits (108), Expect = 8e-05
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 384 KYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQEN 443
K E +EREKR +++ K K+ E K + + +K R ++ ++
Sbjct: 60 KKERREREKRKREREKERKRERGKKEK------KGERKKEERERKKRRREKENKEGEEKE 113
Query: 444 KETQKEMKNKNRNW----EKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSS 499
K +KE K + R E+ RK +R RE ++ R + K +K + +
Sbjct: 114 KRKKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKERERKERK-KRERKQVG 172
Query: 500 HYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRKKK 542
R++K KE K+ ++ +KER E + + K+RKKK
Sbjct: 173 EKEEERKEKERKERKKRERNRKERKKERERKERRERKKERKKK 215
Score = 37.0 bits (84), Expect = 0.046
Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Query: 384 KYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQEN 443
K E +ER+KR ++K K G E K K + R + R ++
Sbjct: 91 KKEERERKKRRREKEN---KEGEEKEKRKKKEKKERGRTSKEGKERERKE-ERKREERKE 146
Query: 444 KETQKEMKNKNRNWEKHRKADRHR--EVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSSHY 501
+E +KE + K R ++ +K +R + E +E+ + ++ K R
Sbjct: 147 RERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERR 206
Query: 502 HTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRKK 541
+E K +E K+ +QK ++ W + + K+RKK
Sbjct: 207 ERKKERKKKEERKKERQKDRQTNWREKERGKRER-KERKK 245
Score = 33.1 bits (74), Expect = 0.67
Identities = 29/158 (18%), Positives = 65/158 (41%), Gaps = 6/158 (3%)
Query: 386 EIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQ-ENK 444
EI+ERE+ ++ + K G S+ + E + K R + + + E K
Sbjct: 37 EIREREREIETR-----KEGKKERESERKKERREREKRKREREKERKRERGKKEKKGERK 91
Query: 445 ETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSSHYHTS 504
+ ++E K + R E ++ + ++ +T + ++ K R
Sbjct: 92 KEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKERERKK 151
Query: 505 REDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRKKK 542
E + +E K K++++++ E ++ K+RKK+
Sbjct: 152 EEREKERERKERKKRERKQVGEKEEERKEKERKERKKR 189
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 42.7 bits (99), Expect = 8e-04
Identities = 55/251 (21%), Positives = 89/251 (35%), Gaps = 38/251 (15%)
Query: 300 HSWDKQCDR---CHMLGHYTDAC-TEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQ 355
HS + DR H LG + + +R + P P+ SA + Y+ +
Sbjct: 45 HSCSRSGDRNGLTHQLGGLSQGSRNQSYRSRSRSRSRERPSAPRGIPFASASSSVYYGSY 104
Query: 356 KGHYGHECPEREVYDPSPVSPFICYYDDKYEIQEREKRLKQKIKVLK-----------KN 404
YG + P+ D + E R+KRL ++ ++ + KN
Sbjct: 105 SRPYGSD------------KPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKN 152
Query: 405 GVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQE-NKETQKEMKNKNRNWEKHRKA 463
PEP + +E P S + + +KE K+ + K + KH+K
Sbjct: 153 ---PEPDSDEHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKY 209
Query: 464 DRHREVDEDFPRGPKTYSSPGSFK--TQKPSKPFHRSSHYHTSREDKSPKE-----GKRG 516
+ D D + K +K K HRS Y R KS KE K
Sbjct: 210 SEDSDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKES 269
Query: 517 KQKKKERCWED 527
+++ E W+D
Sbjct: 270 QEEFLENPWKD 280
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 41.6 bits (96), Expect = 0.002
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 11/166 (6%)
Query: 384 KYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQEN 443
K E +EREKR +++ K K+ E K + E RK R + R +E
Sbjct: 37 KKERREREKRKREREKERKRERGKKEKKKRKKRERGKERERK--RKEREKQRKERREKER 94
Query: 444 KETQKEMKNKNRNW-------EKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFH 496
++ +KE K + R +K + +R RE + R K K +K K
Sbjct: 95 RKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREK--E 152
Query: 497 RSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRKKK 542
R ++ K + K+ ++ +KER E + + K+RKK+
Sbjct: 153 RGKRERKRKKRKKEEREKKRERNRKERKKERERKERRERKKERKKE 198
>gi|239747891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 437 NRWPQENKETQKEM-KNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPF 495
+R Q +ET++E + + R ++ RK RE D+D R K + + +K +
Sbjct: 63 DRQRQRERETERETERQRERQRQRERKRQTDRERDKDRDRERKRETDRNRERNRKGGRER 122
Query: 496 HRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRKKK 542
+ + RE + ++ +R +Q+++ER E D + ++ +KK
Sbjct: 123 DKQTERERDRERERQRQRERERQRQRERKRETDRERQRWAEREERKK 169
Score = 40.4 bits (93), Expect = 0.004
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 441 QENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSSH 500
+ ++ Q+E +N+ +HR+ DRHRE D R + + ++ + R
Sbjct: 18 ERERDRQRERENQTERENRHRQRDRHRERDRQTDREKE--------RERQKERDRQRQRE 69
Query: 501 YHTSREDKSPKEGKRGKQKKKERCWE-DDDNDNLFLIKQRKKKS 543
T RE + +E +R +++K++ E D D D ++RK+++
Sbjct: 70 RETERETERQRERQRQRERKRQTDRERDKDRD-----RERKRET 108
Score = 29.3 bits (64), Expect = 9.6
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 441 QENKETQKEMKNK-NRNWEKHRKADRHR----EVDEDFPRGPKTYSSPGSFKTQKPSKPF 495
+ +K+ +E K + +RN E++RK R R E + D R + + ++ +
Sbjct: 95 ERDKDRDRERKRETDRNRERNRKGGRERDKQTERERDRERERQRQRERERQRQRERKRET 154
Query: 496 HRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRK 540
R RE++ + K K+++KE+ E+ ++ K+RK
Sbjct: 155 DRERQRWAEREERKKERKKERKKERKEKKKEEKRRED----KKRK 195
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 40.4 bits (93), Expect = 0.004
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 435 KSNRWPQENKETQKEMKNK--NRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPS 492
+ NR + +E Q+E +NK +R+ E+ R+ +R RE + + R +T + +
Sbjct: 182 EKNRQERRERERQREKENKTEDRHSERGRERERERETETETERKRQT------DRERDRQ 235
Query: 493 KPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRKKKS 543
+ R RE S +E +R K++++ER D D D K+R++++
Sbjct: 236 RKTEREREKQAERERASERETERDKERERER---DRDRDRDRRQKERERQT 283
Score = 36.6 bits (83), Expect = 0.060
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 441 QENKETQKEMKNKN---RNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHR 497
+E ++T++E K R ++HRK DRHRE D + + + + ++ + +
Sbjct: 66 REKRQTERETDRKRERRREKDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQK 125
Query: 498 SSHYHTSREDKSPKEGKRGKQKKKER 523
T RE + ++ + Q+++ER
Sbjct: 126 ERERETEREGERGRDRQTDGQRERER 151
Score = 34.3 bits (77), Expect = 0.30
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 428 RKGRASWKSNRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFK 487
R+ + K R + ++ET+++ + + R E+ R+ +R RE + + R + +
Sbjct: 279 RERQTDRKRQRRTERDRETERK-RERQRERERERERNRKRERERERERERERQRETERDR 337
Query: 488 TQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDD 528
++ + R + R ++ +EG+R ++++ER E D
Sbjct: 338 EKERERKRKRQTEMDRERNRQTGREGRRQAERERERERERD 378
Score = 34.3 bits (77), Expect = 0.30
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 437 NRWPQENKETQKEMKNKN---RNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSK 493
NR + +E ++E + + R+ EK R+ R R+ + D R +T ++ +
Sbjct: 314 NRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAERERER 373
Query: 494 PFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRKKK 542
R RE++ ++ R +QK++ER E D + KQR+++
Sbjct: 374 ERERDRQSAREREERE-RDRDRDRQKERERQTEKDRDGQRETEKQRERE 421
Score = 31.2 bits (69), Expect = 2.5
Identities = 26/138 (18%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Query: 388 QEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGR--ASWKSNRWPQENKE 445
+ERE+ +++ + + E + + E R+GR A + R + +++
Sbjct: 321 RERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAERERERERERDRQ 380
Query: 446 TQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSSHYHTSR 505
+ +E + + R+ ++ R+ +R R+ ++D G +T+K R
Sbjct: 381 SAREREERERDRDRDRQKERERQTEKD---------RDGQRETEK-------------QR 418
Query: 506 EDKSPKEGKRGKQKKKER 523
E + +E +RG+++ +ER
Sbjct: 419 EREKDRESERGRERGRER 436
Score = 29.3 bits (64), Expect = 9.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 441 QENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSSH 500
+ N++ ++E + + R E R+ DR RE + R K + ++ + +
Sbjct: 55 ERNRQKERERRREKRQTE--RETDRKRERRREKDRHRK------RDRHRERQRDREKERE 106
Query: 501 YHTSREDKSPKEGKRGKQKKKER 523
T RE +E +R +QK++ER
Sbjct: 107 RQTDRERDRQREKERNRQKERER 129
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 40.4 bits (93), Expect = 0.004
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 428 RKGRASWKSNRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFK 487
+K + + ++ + +E +KE K K + EK ++ ++ ++ E R K +
Sbjct: 5 KKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKR 64
Query: 488 TQKPSKPFHR----SSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRKKK 542
+K K +E++ +EG+R K+KKK R E+++ ++ KKK
Sbjct: 65 KRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKRRRKTKKK 123
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 39.7 bits (91), Expect = 0.007
Identities = 106/502 (21%), Positives = 194/502 (38%), Gaps = 64/502 (12%)
Query: 58 NSGNSESSSSKPNQKKLIVLSDSEVIQLSDGSEVITLSDEDSIYRCKGKNVRVQAQENAH 117
+S SE +SS P +L + +++ I S S+ D + K + + +
Sbjct: 25 SSEESEETSSPP---RLAMNQNTDKISGSG-------SNSDMMENSKEEGTSSSEKSKSS 74
Query: 118 GLSSSLQSNELVDKKCKSDIEKPKSEERSGVIREVMIIEVSSSEEEESTISEGDNVESWM 177
G S S + +V K +SD EKP +E + E +S+E E+ I+ + +
Sbjct: 75 GSSRSKRKPSIVTKYVESDDEKPLDDE--------TVNEDASNENSENDITMQSLPKGTV 126
Query: 178 LLGCEV---DDKDD-----DILLNLVGCENSVTEGEDGINWSISDKDIEAQIANNRTPGR 229
++ E +DKDD + + EN GEDG++ +S Q+ + +
Sbjct: 127 IVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVSCTACGQQVNHFQKDSI 186
Query: 230 WTQRYYSANKNIICRNCDK---RGHLSKNCPLPRKVRRCFLCSRRGHLLYS--CPAPLCE 284
+ + + + +IC+NC K +S++ +C C+ G+L+ C C+
Sbjct: 187 YR---HPSLQVLICKNCFKYYMSDDISRDS--DGMDEQCRWCAEGGNLICCDFCHNAFCK 241
Query: 285 YCPVPKM--LDHSCLFRHSWDKQCDRCH--MLGHYTDACTEIWRQYHLTTKPGPPKKPKT 340
C + + + S + + C CH L AC ++ + KK K
Sbjct: 242 KCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFENLEQLLQQN-KKKIKV 300
Query: 341 PSRPSALAYCY--HCAQKGHYGHECPEREVYDPSPVSPFICYYDDKYEIQEREKRLKQKI 398
S S Y + + K + E + D S Y +E K+ K+ I
Sbjct: 301 DSEKSNKVYEHTSRFSPKKTSSNCNGEEKKLDDSCSGSVTYSYSALIVPKEMIKKAKKLI 360
Query: 399 -----------KVLKK---NGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQENK 444
K LK+ N I +KL +KA ++ DI+K + + + ++
Sbjct: 361 ETTANMNSSYVKFLKQATDNSEISSATKLRQLKAF-KSVLADIKKAHLALEED---LNSE 416
Query: 445 ETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQ-KPSKPFHRSSHYHT 503
+ NK +N ++H+ D E P K++ K S+ S H H
Sbjct: 417 FRAMDAVNKEKNTKEHKVIDAKFETKARKGEKPCALEKKDISKSEAKLSRKQVDSEHMHQ 476
Query: 504 S--REDKSPKEGKRGKQKKKER 523
+ E++ + G+ KK +R
Sbjct: 477 NVPTEEQRTNKSTGGEHKKSDR 498
Score = 31.6 bits (70), Expect = 1.9
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 17/153 (11%)
Query: 386 EIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQENKE 445
E +E+ K LK K ++G+ K ++E D ++ + + + P + K+
Sbjct: 941 ETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSEDDKKQSKKGTEEKKKPSDFKK 1000
Query: 446 TQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTY---SSPGSFKTQK----PSKPFHRS 498
+M+ + + + RE FP+G K ++ G K++K SK
Sbjct: 1001 KVIKMEQQYESSSDGTEKLPEREEICHFPKGIKQIKNGTTDGEKKSKKIRDKTSKKKDEL 1060
Query: 499 SHYHT----------SREDKSPKEGKRGKQKKK 521
S Y S EDK K G G++KK+
Sbjct: 1061 SDYAEKSTGKGDSCDSSEDKKSKNGAYGREKKR 1093
Score = 29.3 bits (64), Expect = 9.6
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 417 KAANENPHHDIRKGRASWKSNRWPQENKETQK----EMKNKNRNWEKHRKADRHREVDED 472
K H ++ KGR K + E+ + Q+ E +++ + ++ R + E+
Sbjct: 1356 KKTKPKEHKEV-KGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEE 1414
Query: 473 FPRGPKTYSSPGSFKTQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDN 532
R K K Q+ S ++S+ S E++ KE + +++++E ED+++D+
Sbjct: 1415 NQRSYKQKKKRRRIKVQEDSSSENKSN----SEEEEEEKEEEEEEEEEEEEEEEDENDDS 1470
Query: 533 LFLIKQRKK 541
K RKK
Sbjct: 1471 KSPGKGRKK 1479
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 39.3 bits (90), Expect = 0.009
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 384 KYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQEN 443
+Y Q E R +++ V K + EP A+E+ + +GR + W +
Sbjct: 2077 EYRNQTFEGRQRERFDVGPKEKPLEEPDAQG---RASEDRRRERERGRNWSRERDWDRPR 2133
Query: 444 KETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSSHYHT 503
+ + K+ +R+W+++R+ +R+ + + RG + S + ++ + R
Sbjct: 2134 EWDRHRDKDSSRDWDRNRERSANRDREREADRGKEWDRSRERSRNRERERDRRRDRDRSR 2193
Query: 504 SRE---DKSPKEGKRGKQKK 520
SRE DK+ ++ +RG+ +K
Sbjct: 2194 SRERDRDKA-RDRERGRDRK 2212
>gi|13375938 lin-28 homolog [Homo sapiens]
Length = 209
Score = 39.3 bits (90), Expect = 0.009
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 222 ANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCP 279
+ R G+ Q+ S K C NC H +K C LP + ++C C H++ SCP
Sbjct: 120 SERRPKGKSMQKRRS--KGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCP 175
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 38.9 bits (89), Expect = 0.012
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 420 NENPHHDIRKGRASWKS---NRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRG 476
+++PH K R KS + + K+T++++K K R EK R+ +R RE + R
Sbjct: 351 SKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKE----RE 406
Query: 477 PKTYSSPGSFKTQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDD-DNDNLFL 535
+ + ++ K + RE + E R K+K+KE+ E + + D
Sbjct: 407 KEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKE 466
Query: 536 IKQRKKK 542
I +++KK
Sbjct: 467 IDEKRKK 473
>gi|19923844 coiled-coil domain containing 82 [Homo sapiens]
Length = 544
Score = 38.9 bits (89), Expect = 0.012
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 16/212 (7%)
Query: 18 RDESSSELSVDSEVEFQLYSQIHYAQDLDDVIREEEHEEKNSGNSESSSSKPNQKKLIVL 77
R S L D E++ + + ++LD E EE +S + P ++ + L
Sbjct: 31 RSSISQLLDSDEELDSEEFDS---DEELDSDESFENDEELDSNKGPDCNKTPGSERELNL 87
Query: 78 SDSEVIQLSDGSEVITLSDEDSIY-----RCKGKNVRVQAQENAHGLSSSLQSNELVDKK 132
S ++ + S+ + S S Y + K +N+ +Q QE H N+ +
Sbjct: 88 S--KIQSEGNDSKCLINSGNGSTYEEETNKIKHRNIDLQDQEK-HLSQEDNDLNKQTGQI 144
Query: 133 CKSDIEKPKSEERSGVIREVMIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDD-DIL 191
+ D EK S+E + + ++ I EEE+ + + S M C+ D+ DD DIL
Sbjct: 145 IEDDQEKHLSQEDNDLNKQTGQIIEDDLEEEDIKRGKRKRLSSVM---CDSDESDDSDIL 201
Query: 192 LNLVGCENSVTEGED-GINWSISDKDIEAQIA 222
+ VG + ED G + + K E +A
Sbjct: 202 VRKVGVKRPRRVVEDEGSSVEMEQKTPEKTLA 233
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 38.9 bits (89), Expect = 0.012
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 420 NENPHHDIRKGRASWKS---NRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRG 476
+++PH K R KS + + K+T++++K K R EK R+ +R RE + R
Sbjct: 235 SKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKE----RE 290
Query: 477 PKTYSSPGSFKTQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDD-DNDNLFL 535
+ + ++ K + RE + E R K+K+KE+ E + + D
Sbjct: 291 KEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKE 350
Query: 536 IKQRKKK 542
I +++KK
Sbjct: 351 IDEKRKK 357
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 38.5 bits (88), Expect = 0.016
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 425 HDIRKGRASWKSNRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPG 484
H I + ++WK R K+T K+ K K +K +K ++ + T
Sbjct: 14 HVITEKESAWKRGR----KKKTTKKKKKKKTTMKKKKKTTTKKKTTTKTKKRTTTTKKTT 69
Query: 485 SFKTQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKER 523
+ T++ K + +E + KE K+ K+KKK++
Sbjct: 70 TTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKK 108
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 38.1 bits (87), Expect = 0.021
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 397 KIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQENKETQKEMKNKNRN 456
K VL +N +PS+ E+P + K + K+ QK ++ +R
Sbjct: 182 KRNVLGRNLTANDPSQEYVASEGEEDPEVEFLKSLTT----------KQKQKLLRKLDRL 231
Query: 457 WEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSSHYHTSREDKSPKEGKRG 516
+K +K DR ++ + K + S S + S +S + E + ++ +
Sbjct: 232 EKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQR 291
Query: 517 KQKKKERCWEDDDNDNLFLIKQRKKK 542
K++KK +C +++D+ K +K+K
Sbjct: 292 KKRKKNKCSGHNNSDSEEKDKSKKRK 317
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 37.7 bits (86), Expect = 0.027
Identities = 26/152 (17%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 382 DDKYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNR--W 439
+ + E++E+EK L+++ K+ ++ + E + + E + W+ W
Sbjct: 287 EQEKELREQEKELREQKKLREQEEQMQEQEEKMW-----EQEEKMREQEEKMWRQEERLW 341
Query: 440 PQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSS 499
QE + ++E K +++ + +R RE +E K + + ++ + +
Sbjct: 342 EQEKQMREQEQKMRDQEERMWEQDERLREKEERMREQEKMWEQEEKMQEEERIREREKKM 401
Query: 500 HYHTSREDKSPKEGKRGKQKKKERCWEDDDND 531
E+++ +E + QK++E WE ++ +
Sbjct: 402 R----EEEETMREQEEKMQKQEENMWEQEEKE 429
Score = 34.7 bits (78), Expect = 0.23
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 427 IRKGRASWKSNRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSF 486
+R+ + W+ +E K+TQ++ K EK R+ +R RE ++ R +
Sbjct: 523 MREQKKMWQQEEKMREEKKTQEQEKKTWDQEEKMREEERMREREKKM-REEEEMMREQEE 581
Query: 487 KTQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNL 533
K Q+ + +E+K +E + +++E+ WE ++ D +
Sbjct: 582 KMQEQEEKMREQEEKMWEQEEKM-QEQEEKMWEQEEKMWEQEEEDKM 627
>gi|27883882 P18SRP protein [Homo sapiens]
Length = 155
Score = 37.7 bits (86), Expect = 0.027
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 422 NPHHDIRKGRASWKSNRWPQENKETQK--EMKNKNRNWEKHRKADRHREVDEDFPRGPKT 479
+P DI +S S +EN+E K ++ K N E+ +K ++ +E + + ++
Sbjct: 35 DPKRDIVLDVSSTSSEDSDEENEELNKLQALQEKRINEEEEKKKEKSKEKIKLKKKRKRS 94
Query: 480 YSSPGSFK-TQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKER 523
YSS + + T K K ++ ++ KS K+GK K++KK+R
Sbjct: 95 YSSSSTEEDTSKQKKQKYQKKEKKKEKKSKS-KKGKHHKKEKKKR 138
Score = 33.5 bits (75), Expect = 0.51
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 342 SRPSALAYCYHCAQKGHYGHEC-------PERE-VYDPSPVSPFICYYDDKYEIQEREKR 393
++ S A C C GH EC P+R+ V D S S +D E E +
Sbjct: 7 NKDSVRAGCKKCGYPGHLTFECRNFLRVDPKRDIVLDVSSTSS-----EDSDEENEELNK 61
Query: 394 LK--QKIKVLKKNGVIPEPSKLPY-IKAANENPHHDIRKGRASWKSNRWPQENKETQKEM 450
L+ Q+ ++ ++ E SK +K + + + K + + KE +KE
Sbjct: 62 LQALQEKRINEEEEKKKEKSKEKIKLKKKRKRSYSSSSTEEDTSKQKKQKYQKKEKKKEK 121
Query: 451 KNKNRNWEKHRKADRHREVDE 471
K+K++ + H+K + R+ ++
Sbjct: 122 KSKSKKGKHHKKEKKKRKKEK 142
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 37.4 bits (85), Expect = 0.035
Identities = 40/157 (25%), Positives = 55/157 (35%), Gaps = 33/157 (21%)
Query: 259 PRKVRRCFLCSRRGHLLY----SCPAPLCEYC------PVPKMLDHSCLFRHSWDKQCDR 308
PR V CFLC+ GH+ + C P ++C P+ L++ C R + C R
Sbjct: 1430 PRVV--CFLCASSGHVEFVYCQVCCEPFHKFCLEENERPLEDQLENWCCRRCKFCHVCGR 1487
Query: 309 CHMLGHYTDACTEIWRQYH-LTTKPGPPKKPKTPSRPSALAYCYHC-------------A 354
H C + YH P P KP + C C A
Sbjct: 1488 QHQATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCVRCKSCGSTTPGKGWDA 1547
Query: 355 QKGH---YGHECPEREVYDPSPVSPFI--CYYDDKYE 386
Q H H+C +++ P CY DD YE
Sbjct: 1548 QWSHDFSLCHDC--AKLFAKGNFCPLCDKCYDDDDYE 1582
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 37.4 bits (85), Expect = 0.035
Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 43/211 (20%)
Query: 335 PKKPKTPSRPSALAYCYHCAQKGHYGHECPEREVYDPSPVSPFICYYDDKYEIQEREKRL 394
P+K K+P + A A PE+E+ V K ++E EK
Sbjct: 796 PEKAKSPLKEDAKA---------------PEKEIPKKEEV---------KSPVKEEEKPQ 831
Query: 395 KQKIKVLKKNGVIPEPSKLPYIKAANEN--------PHHDIRKGRASWKSNRWPQENKET 446
+ K+K K E K P E P + K + K ++ KE+
Sbjct: 832 EVKVKEPPKKA---EEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKES 888
Query: 447 QKEMKNKNRNWEK-----HRKADRHREVDEDFPRGPKTY---SSPGSFKTQKPSKPFHRS 498
+ E K + +K ++A EV ED KT P K ++PSKP +
Sbjct: 889 KVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKK 948
Query: 499 SHYHTSREDKSPKEGKRGKQKKKERCWEDDD 529
++ K K K ++ K E ++DD
Sbjct: 949 EAAPEKKDTKEEKAKKPEEKPKTEAKAKEDD 979
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 37.4 bits (85), Expect = 0.035
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 24/145 (16%)
Query: 382 DDKYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQ 441
+DK I++ EK K+++K K + E K P + E P +++K + +
Sbjct: 664 EDKTPIKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKK 723
Query: 442 ENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQ----KPSKPFHR 497
E KE +KE+K P+ K S+P S + KP P
Sbjct: 724 EEKEPKKEIKK--------------------LPKDAKKSSTPLSEAKKPAALKPKVPKKE 763
Query: 498 SSHYHTSREDKSPKEGKRGKQKKKE 522
S S PKE + K KKE
Sbjct: 764 ESVKKDSVAAGKPKEKGKIKVIKKE 788
>gi|18375528 UPF3 regulator of nonsense transcripts homolog B
isoform 1 [Homo sapiens]
Length = 483
Score = 37.4 bits (85), Expect = 0.035
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 382 DDKYEIQEREKRLKQKIKVLKKNGVIPEPSKL---PYIKAANENPHHDIRKGRASWKSNR 438
+++ + +E EKR ++ I+ LKK IPE KL P IK H + +A + N
Sbjct: 231 EERRKWKEEEKRKRKDIEKLKKIDRIPERDKLKDEPKIKV-----HRFLL--QAVNQKNL 283
Query: 439 WPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTY--SSPGSFKTQKPSKPFH 496
+ K +KE+ + EK +K D+ DE T S K +KP +P
Sbjct: 284 LKKPEKGDEKELDKR----EKAKKLDKENLSDERASGQSCTLPKRSDSELKDEKPKRPED 339
Query: 497 RSSHYHTSRE-------DKSPKEGKRGKQKKKER 523
S + RE ++ +E +R K++++ER
Sbjct: 340 ESGRDYREREREYERDQERILRERERLKRQEEER 373
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 37.4 bits (85), Expect = 0.035
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 391 EKRLKQKIKVLKKNGVIPEPSKLPYIKAAN----ENPHHDIR-KGRASWKSNRWPQENKE 445
E +LK++ +KK +P + I+ ++ +NP + K KS ++ K+
Sbjct: 1336 EAKLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKK 1395
Query: 446 TQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFH 496
KE K K + K ++ D+ R+ +D PK+ + S K+++ P H
Sbjct: 1396 ENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVH 1446
Score = 35.8 bits (81), Expect = 0.10
Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 400 VLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASW---KSNRWPQENKETQKEMKNKNRN 456
V + N EPS+ + A+ K R K +W QE E ++E +
Sbjct: 109 VRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQEPSEDEQEQGTSAES 168
Query: 457 WEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSSHYHTSREDKSPKEGKRG 516
+ +K R V P+ P KTQ+ + SS +D++PK R
Sbjct: 169 EPEQKKVKARRPVPRRTVPKPRVKKQP---KTQRGKRKKQDSSD-EDDDDDEAPKRQTRR 224
Query: 517 KQKKKERCWEDDD 529
+ K EDDD
Sbjct: 225 RAAKNVSYKEDDD 237
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 37.0 bits (84), Expect = 0.046
Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 28/184 (15%)
Query: 51 EEEHEEKNSGNSESSSSKPNQKKLIVLSDSEVIQLSDGSEVITLSDEDSIYRCKGKNVRV 110
EEE EE+ E S+S+ ++++ + E S+ E S E+ V
Sbjct: 279 EEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEE-----------V 327
Query: 111 QAQENAHGLSSSLQSNELVDKKCKSDIEKPKSEERSGVIREVMIIEVSSSEEEESTISEG 170
+E + +++ LV + + D + +SEE EV + S ++EG
Sbjct: 328 SEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEE--------EVGEGTPQSSALTEG 379
Query: 171 DNV-ESWMLLGCEVDDKDDDILLNLVGCE--------NSVTEGEDGINWSISDKDIEAQI 221
D V +S LL E+ + L L GC N + EG G+ + DK + +
Sbjct: 380 DYVPDSPALLPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIV 439
Query: 222 ANNR 225
A R
Sbjct: 440 ALKR 443
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,921,532
Number of Sequences: 37866
Number of extensions: 1342558
Number of successful extensions: 5953
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 5235
Number of HSP's gapped (non-prelim): 810
length of query: 543
length of database: 18,247,518
effective HSP length: 107
effective length of query: 436
effective length of database: 14,195,856
effective search space: 6189393216
effective search space used: 6189393216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.