Guide to the Human Genome
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Name: LOC100130705 Sequence: fasta or formatted (176aa) NCBI GI: 169171214
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {176aa} PREDICTED: hypothetical protein
alt mRNA {176aa} PREDICTED: hypothetical protein
alt mRNA {176aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         14           3
 C cysteine            1.7          3           1
 D aspartate           2.8          5           1
 E glutamate           5.7         10           2
 F phenylalanine       4.5          8           2
 G glycine             3.4          6           1
 H histidine           1.1          2           1
 I isoleucine          2.8          5           1
 K lysine              8.5         15           1
 L leucine            11.4         20           2
 M methionine          3.4          6           1
 N asparagine          2.3          4           1
 P proline            11.9         21           3
 Q glutamine           4.0          7           1
 R arginine            8.0         14           1
 S serine              6.2         11           1
 T threonine           4.0          7           2
 V valine              3.4          6           1
 W tryptophan          1.7          3           1
 Y tyrosine            5.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130705          1.000   PREDICTED: hypothetical protein 
LOC100130705          1.000   PREDICTED: hypothetical protein 
LOC100130705          1.000   PREDICTED: hypothetical protein 
MLL4                  0.047   myeloid/lymphoid or mixed-lineage leukemia 4 
VPS37B                0.041   vacuolar protein sorting 37B 
LOC645529             0.041   PREDICTED: similar to Putative acrosin-like proteas...
ADAM8                 0.041   ADAM metallopeptidase domain 8 precursor 
MNT                   0.041   MAX binding protein 
ZFHX2                 0.038   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.038   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.038   PREDICTED: zinc finger homeobox 2 
SNAPC2                0.038   small nuclear RNA activating complex, polypeptide 2, ...
DGKK                  0.035   diacylglycerol kinase kappa 
MED9                  0.035   mediator complex subunit 9 
PTPN23                0.032   protein tyrosine phosphatase, non-receptor type 23 [...
CDKN1C                0.029   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.029   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.029   cyclin-dependent kinase inhibitor 1C isoform a 
GLIS1                 0.029   GLIS family zinc finger 1 
ACR                   0.029   acrosin precursor 
BCORL1                0.029   BCL6 co-repressor-like 1 
HOXA3                 0.029   homeobox A3 isoform a 
HOXA3                 0.029   homeobox A3 isoform a 
WIPF3                 0.029   WAS/WASL interacting protein family, member 3 [Homo...
SELV                  0.029   selenoprotein V 
DIAPH1                0.029   diaphanous 1 isoform 2 
DIAPH1                0.029   diaphanous 1 isoform 1 
MAP3K6                0.029   mitogen-activated protein kinase kinase kinase 6 [Ho...
SLC16A2               0.029   solute carrier family 16, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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