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Search of human proteins with 169171016
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171977 PREDICTED: hypothetical protein [Homo sapiens] 421 e-118
gi|169171016 PREDICTED: hypothetical protein [Homo sapiens] 421 e-118
gi|239509059 PREDICTED: hypothetical protein [Homo sapiens] 421 e-118
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] 281 2e-76
gi|22748835 transmembrane protein 178 [Homo sapiens] 129 1e-30
gi|93588657 claudin domain containing 1 protein isoform d [Homo ... 36 0.018
gi|93588650 claudin domain containing 1 protein isoform a [Homo ... 36 0.018
gi|93588620 claudin domain containing 1 protein isoform b [Homo ... 36 0.018
gi|93588614 claudin domain containing 1 protein isoform a [Homo ... 36 0.018
gi|93588624 claudin domain containing 1 protein isoform a [Homo ... 36 0.018
gi|11096340 claudin domain containing 1 protein isoform a [Homo ... 36 0.018
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 32 0.26
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 32 0.26
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens] 32 0.26
gi|226437592 transmembrane protein 114 [Homo sapiens] 32 0.26
gi|13899273 transmembrane protein 47 [Homo sapiens] 31 0.58
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 31 0.76
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 31 0.76
gi|22748765 claudin domain containing 2 [Homo sapiens] 31 0.76
gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens] 30 1.00
gi|71999131 opsin 3 [Homo sapiens] 28 3.8
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ... 28 6.5
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [... 28 6.5
gi|4501915 ADAM metallopeptidase domain 9 isoform 1 precursor [H... 27 8.4
gi|187423910 solute carrier family 7, member 9 [Homo sapiens] 27 8.4
gi|7657591 solute carrier family 7, member 9 [Homo sapiens] 27 8.4
gi|117168250 phospholipase C, epsilon 1 [Homo sapiens] 27 8.4
gi|108773804 Fraser syndrome 1 [Homo sapiens] 27 8.4
>gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 421 bits (1083), Expect = e-118
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC
Sbjct: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
Query: 61 WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISL 120
WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISL
Sbjct: 61 WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISL 120
Query: 121 CTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVP 180
CTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVP
Sbjct: 121 CTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVP 180
Query: 181 RTNYPKSRPENGTVC 195
RTNYPKSRPENGTVC
Sbjct: 181 RTNYPKSRPENGTVC 195
>gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 421 bits (1083), Expect = e-118
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC
Sbjct: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
Query: 61 WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISL 120
WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISL
Sbjct: 61 WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISL 120
Query: 121 CTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVP 180
CTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVP
Sbjct: 121 CTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVP 180
Query: 181 RTNYPKSRPENGTVC 195
RTNYPKSRPENGTVC
Sbjct: 181 RTNYPKSRPENGTVC 195
>gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 421 bits (1083), Expect = e-118
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC
Sbjct: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
Query: 61 WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISL 120
WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISL
Sbjct: 61 WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISL 120
Query: 121 CTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVP 180
CTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVP
Sbjct: 121 CTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVP 180
Query: 181 RTNYPKSRPENGTVC 195
RTNYPKSRPENGTVC
Sbjct: 181 RTNYPKSRPENGTVC 195
>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 281 bits (720), Expect = 2e-76
Identities = 135/165 (81%), Positives = 139/165 (84%), Gaps = 9/165 (5%)
Query: 40 PSEDHGSAGLQLQCSTT---------GTSCWGHESSDLRRMTAGFMGMAVAIILFGWIIG 90
P + GSA + L C + G + LRRMTAGFMGMAVAIILFGWIIG
Sbjct: 139 PHQKEGSAAVPLLCPVSPHSPANFLPGRGLSVSDGQYLRRMTAGFMGMAVAIILFGWIIG 198
Query: 91 VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG 150
VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG
Sbjct: 199 VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG 258
Query: 151 WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC 195
WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC
Sbjct: 259 WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC 303
Score = 145 bits (367), Expect = 2e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Query: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC
Sbjct: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
Query: 61 WGHESSDL 68
WGHESS +
Sbjct: 61 WGHESSSI 68
>gi|22748835 transmembrane protein 178 [Homo sapiens]
Length = 297
Score = 129 bits (325), Expect = 1e-30
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 68 LRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGI 127
LRR+TAGF+GMAVA++L G I+ + W+ L Q+VAGLLFLM G FC ISLCT A I
Sbjct: 173 LRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASI 232
Query: 128 NFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 176
+++L+R P+ +Y LP D+ HGY WS+FCAW LG + +G C P +
Sbjct: 233 SYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
>gi|93588657 claudin domain containing 1 protein isoform d [Homo
sapiens]
Length = 158
Score = 36.2 bits (82), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 51 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 108
Query: 138 LYGLPDDISHGYGWSMFC 155
LPD++S +GWS FC
Sbjct: 109 ---LPDNVSGEFGWS-FC 122
>gi|93588650 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 36.2 bits (82), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
Query: 138 LYGLPDDISHGYGWSMFC 155
LPD++S +GWS FC
Sbjct: 204 ---LPDNVSGEFGWS-FC 217
>gi|93588620 claudin domain containing 1 protein isoform b [Homo
sapiens]
Length = 276
Score = 36.2 bits (82), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 169 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 226
Query: 138 LYGLPDDISHGYGWSMFC 155
LPD++S +GWS FC
Sbjct: 227 ---LPDNVSGEFGWS-FC 240
>gi|93588614 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 36.2 bits (82), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
Query: 138 LYGLPDDISHGYGWSMFC 155
LPD++S +GWS FC
Sbjct: 204 ---LPDNVSGEFGWS-FC 217
>gi|93588624 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 36.2 bits (82), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
Query: 138 LYGLPDDISHGYGWSMFC 155
LPD++S +GWS FC
Sbjct: 204 ---LPDNVSGEFGWS-FC 217
>gi|11096340 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 36.2 bits (82), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
Query: 138 LYGLPDDISHGYGWSMFC 155
LPD++S +GWS FC
Sbjct: 204 ---LPDNVSGEFGWS-FC 217
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 32.3 bits (72), Expect = 0.26
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 112 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 171
Query: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
L D + +GWS+ W L++G
Sbjct: 172 LEEKALLDQVDISFGWSLALGWISFIAELLTG 203
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 32.3 bits (72), Expect = 0.26
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 106 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 165
Query: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
L D + +GWS+ W L++G
Sbjct: 166 LEEKALLDQVDISFGWSLALGWISFIAELLTG 197
>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 122
Score = 32.3 bits (72), Expect = 0.26
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 11 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 70
Query: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
L D + +GWS+ W L++G
Sbjct: 71 LEEKALLDQVDISFGWSLALGWISFIAELLTG 102
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 32.3 bits (72), Expect = 0.26
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 112 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 171
Query: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
L D + +GWS+ W L++G
Sbjct: 172 LEEKALLDQVDISFGWSLALGWISFIAELLTG 203
>gi|13899273 transmembrane protein 47 [Homo sapiens]
Length = 181
Score = 31.2 bits (69), Expect = 0.58
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 37 PMWPSEDHGS-AGLQLQCSTTGT----SCWGHESSDLRRMTAGFMGMAVAIILFGWIIGV 91
P W + DH L C + C SSD + T + AIIL +++G+
Sbjct: 41 PAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGL 100
Query: 92 LGCCWD--RGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYP-RYLYGLPDDISHG 148
+ C R + VA +LF ++ +C+ V YP +++ + I H
Sbjct: 101 ISICVGSRRRFYRPVAVMLF----AAVVLQVCSLVL--------YPIKFIETVSLKIYHE 148
Query: 149 YGWSMFCAWG 158
+ W AWG
Sbjct: 149 FNWGYGLAWG 158
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 30.8 bits (68), Expect = 0.76
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 101 MQYVAGLLFLMGGTFCI--ISLCTCVAGINFELSRYPRY--LYGLPDDISHGY--GWSMF 154
M +G++F++ G I +S+ + NF +S Y + G+ + Y G ++F
Sbjct: 117 MTLTSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALF 176
Query: 155 CAWGGLGLTLISGFFCTLAPSVQPVPRTNY 184
W GLTLI G +A TNY
Sbjct: 177 VGWVAGGLTLIGGVMMCIACRGLAPEETNY 206
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 30.8 bits (68), Expect = 0.76
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 101 MQYVAGLLFLMGGTFCI--ISLCTCVAGINFELSRYPRY--LYGLPDDISHGY--GWSMF 154
M +G++F++ G I +S+ + NF +S Y + G+ + Y G ++F
Sbjct: 117 MTLTSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALF 176
Query: 155 CAWGGLGLTLISGFFCTLAPSVQPVPRTNY 184
W GLTLI G +A TNY
Sbjct: 177 VGWVAGGLTLIGGVMMCIACRGLAPEETNY 206
>gi|22748765 claudin domain containing 2 [Homo sapiens]
Length = 167
Score = 30.8 bits (68), Expect = 0.76
Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 39 WPSEDHGSAGLQLQCSTTGTSCWGHESSDLRRMTAGFMGMAVAIILFGWIIGV-LGCCWD 97
W + G +GL +C+ C +T M +AV + + G ++G+ + C
Sbjct: 31 WTRQQEGHSGLWQECNHG--ICSSIPCQTTLAVTVACMVLAVGVGVVGMVMGLRIRCDEG 88
Query: 98 RGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAW 157
L +GG + L T + G + + + ++ + WS F W
Sbjct: 89 ESLRGQTTSAFLFLGG----LLLLTALIGYTVK-NAWKNNVF---------FSWSYFSGW 134
Query: 158 GGLGLTLISGFFCTLAPSV 176
L ++++GF LA +
Sbjct: 135 LALPFSILAGFCFLLADMI 153
>gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens]
Length = 228
Score = 30.4 bits (67), Expect = 1.00
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 61 WGHESSDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQY---VAGLLFLMGGTFCI 117
+G +S + TA F+ + + I+ ++ V C + + V GLL + G F I
Sbjct: 89 FGEIASGFWQATAIFLAVGIFILCMVALVSVFTMCVQSIMKKSIFNVCGLLQGIAGLFLI 148
Query: 118 ISLCTCVAGINFE--LSRYPRYLYGL-PDDISHGYGWSMFCAWGGLGLTLISGFFCTLA 173
+ L AG + + Y P D S GW+ + A GG LT I F A
Sbjct: 149 LGLILYPAGWGCQKAIDYCGHYASAYKPGDCS--LGWAFYTAIGGTVLTFICAVFSAQA 205
>gi|71999131 opsin 3 [Homo sapiens]
Length = 402
Score = 28.5 bits (62), Expect = 3.8
Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 66 SDLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVA 125
SDL G V+ + GW+ +GC WD G F I+S+ T
Sbjct: 86 SDLLVSLFGVTFTFVSCLRNGWVWDTVGCVWDG-----------FSGSLFGIVSIATLTV 134
Query: 126 GINFELSRYPRYLYGLPDDISHG-----YGWSMFCAWGGLGL 162
RY R ++ + S Y W AW G L
Sbjct: 135 ---LAYERYIRVVHARVINFSWAWRAITYIWLYSLAWAGAPL 173
>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
[Homo sapiens]
Length = 173
Score = 27.7 bits (60), Expect = 6.5
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 72 TAGFMGMAVAIILFGWIIGVLGCC----WDRGLMQYVAGLLFLMGGTFCIISLCTCVA-G 126
T FM ++ + G I+G++ + R + AG++F F +++L
Sbjct: 64 TRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVT 123
Query: 127 INFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPK 186
++F R+ + + WS W + +T +G F A V R + P+
Sbjct: 124 VSFLGRRFGDWRFS----------WSYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR 173
>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
[Homo sapiens]
Length = 215
Score = 27.7 bits (60), Expect = 6.5
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 72 TAGFMGMAVAIILFGWIIGVLGCC----WDRGLMQYVAGLLFLMGGTFCIISLCTCVA-G 126
T FM ++ + G I+G++ + R + AG++F F +++L
Sbjct: 106 TRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVT 165
Query: 127 INFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPK 186
++F R+ + + WS W + +T +G F A V R + P+
Sbjct: 166 VSFLGRRFGDWRFS----------WSYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR 215
>gi|4501915 ADAM metallopeptidase domain 9 isoform 1 precursor [Homo
sapiens]
Length = 819
Score = 27.3 bits (59), Expect = 8.4
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 2 NVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSCW 61
N SG C A C G++ QE+P++ G +Q + GT CW
Sbjct: 552 NCGFSGNEYKKCATGNALC-----GKLQCENVQEIPVF-----GIVPAIIQTPSRGTKCW 601
Query: 62 G 62
G
Sbjct: 602 G 602
>gi|187423910 solute carrier family 7, member 9 [Homo sapiens]
Length = 487
Score = 27.3 bits (59), Expect = 8.4
Identities = 22/83 (26%), Positives = 32/83 (38%)
Query: 83 ILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLP 142
+ F I G C+ G + YVAG M IS+ +Y +P
Sbjct: 309 VAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIP 368
Query: 143 DDISHGYGWSMFCAWGGLGLTLI 165
DI+ + F AW GLT++
Sbjct: 369 GDINSLVNYFSFAAWLFYGLTIL 391
>gi|7657591 solute carrier family 7, member 9 [Homo sapiens]
Length = 487
Score = 27.3 bits (59), Expect = 8.4
Identities = 22/83 (26%), Positives = 32/83 (38%)
Query: 83 ILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLP 142
+ F I G C+ G + YVAG M IS+ +Y +P
Sbjct: 309 VAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIP 368
Query: 143 DDISHGYGWSMFCAWGGLGLTLI 165
DI+ + F AW GLT++
Sbjct: 369 GDINSLVNYFSFAAWLFYGLTIL 391
>gi|117168250 phospholipase C, epsilon 1 [Homo sapiens]
Length = 2302
Score = 27.3 bits (59), Expect = 8.4
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 84 LFGWIIGVLGCCWDRG----LMQYVAGL 107
+F +++ V CCW+ G +M+++AGL
Sbjct: 624 VFSYLVHVAKCCWNMGNYNAVMEFLAGL 651
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 27.3 bits (59), Expect = 8.4
Identities = 16/64 (25%), Positives = 20/64 (31%)
Query: 3 VRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSCWG 62
+ L G+ P C C Y G S EV P + G C G
Sbjct: 332 IHLDGKCCPECISRNGYCVYEETGEFMSSNASEVKRIPEGEKWEDGPCKVCECRGAQVTC 391
Query: 63 HESS 66
+E S
Sbjct: 392 YEPS 395
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.486
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,403,386
Number of Sequences: 37866
Number of extensions: 376619
Number of successful extensions: 1125
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 31
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.