Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC650177 Sequence: fasta or formatted (129aa) NCBI GI: 169210658
Description:

PREDICTED: similar to hCG2042391

Not currently referenced in the text

Other entries for this name:
alt mRNA {129aa} PREDICTED: similar to hCG2042391
alt mRNA {129aa} PREDICTED: similar to hCG2042391
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          7           2
 C cysteine            0.8          1           1
 D aspartate           5.4          7           1
 E glutamate           8.5         11           1
 F phenylalanine       4.7          6           2
 G glycine             8.5         11           2
 H histidine           3.9          5           1
 I isoleucine          3.9          5           1
 K lysine              4.7          6           1
 L leucine             5.4          7           1
 M methionine          3.1          4           1
 N asparagine          6.2          8           1
 P proline             3.1          4           1
 Q glutamine           3.1          4           2
 R arginine            6.2          8           1
 S serine              9.3         12           3
 T threonine           6.2          8           1
 V valine              5.4          7           1
 W tryptophan          1.6          2           1
 Y tyrosine            4.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042391 
LOC650177             1.000   PREDICTED: similar to hCG2042391 
LOC650177             1.000   PREDICTED: similar to hCG2042391 
LOC729213             0.894   PREDICTED: similar to hCG2042391 
LOC729213             0.780   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC100287665          0.767   PREDICTED: hypothetical protein XP_002342862 
LOC646344             0.759   PREDICTED: similar to hCG2042391 
LOC731551             0.527   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.527   PREDICTED: similar to ectonucleotide pyrophosphatas...
ENPP7                 0.367   ectonucleotide pyrophosphatase/phosphodiesterase 7 [...
ENPP5                 0.110   ectonucleotide pyrophosphatase/phosphodiesterase 5 (...
ENPP4                 0.078   ectonucleotide pyrophosphatase/phosphodiesterase 4 (p...
ENPP3                 0.053   ectonucleotide pyrophosphatase/phosphodiesterase 3 ...
ENPP1                 0.045   ectonucleotide pyrophosphatase/phosphodiesterase 1 ...
ENPP2                 0.029   autotaxin isoform 3 preproprotein 
ENPP2                 0.029   autotaxin isoform 2 preproprotein 
ENPP6                 0.020   ectonucleotide pyrophosphatase/phosphodiesterase 6 [...
FRAS1                 0.016   Fraser syndrome 1 
CNN1                  0.012   calponin 1, basic, smooth muscle 
HMCN2                 0.012   PREDICTED: hemicentin 2 
HMCN2                 0.012   PREDICTED: hemicentin 2 
HMCN2                 0.012   PREDICTED: hemicentin 2 
PIGG                  0.012   phosphatidylinositol glycan anchor biosynthesis, cl...
PIGG                  0.012   phosphatidylinositol glycan anchor biosynthesis, cl...
CHEK1                 0.008   checkpoint kinase 1 
CHEK1                 0.008   checkpoint kinase 1 
CHEK1                 0.008   checkpoint kinase 1 
COLEC12               0.004   collectin sub-family member 12 
TFDP3                 0.004   transcription factor Dp family, member 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press