Guide to the Human Genome
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Name: LOC729213 Sequence: fasta or formatted (149aa) NCBI GI: 239750115
Description:

PREDICTED: similar to hCG2042391

Not currently referenced in the text

Other entries for this name:
alt prot {661aa} PREDICTED: similar to ectonucleotide pyrophosphatase/phosphodiest...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          8           2
 C cysteine            2.0          3           1
 D aspartate           6.0          9           1
 E glutamate           9.4         14           1
 F phenylalanine       4.0          6           2
 G glycine             6.7         10           2
 H histidine           3.4          5           1
 I isoleucine          3.4          5           1
 K lysine              4.7          7           1
 L leucine             6.0          9           1
 M methionine          3.4          5           1
 N asparagine          6.0          9           1
 P proline             2.7          4           1
 Q glutamine           2.7          4           2
 R arginine            7.4         11           2
 S serine              9.4         14           3
 T threonine           6.7         10           1
 V valine              4.7          7           1
 W tryptophan          2.0          3           1
 Y tyrosine            4.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042391 
LOC650177             0.760   PREDICTED: similar to hCG2042391 
LOC650177             0.760   PREDICTED: similar to hCG2042391 
LOC650177             0.760   PREDICTED: similar to hCG2042391 
LOC729213             0.729   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC100287665          0.632   PREDICTED: hypothetical protein XP_002342862 
LOC646344             0.625   PREDICTED: similar to hCG2042391 
LOC731551             0.500   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.500   PREDICTED: similar to ectonucleotide pyrophosphatas...
ENPP7                 0.257   ectonucleotide pyrophosphatase/phosphodiesterase 7 [...
ENPP5                 0.066   ectonucleotide pyrophosphatase/phosphodiesterase 5 (...
ENPP4                 0.028   ectonucleotide pyrophosphatase/phosphodiesterase 4 (p...
FRAS1                 0.017   Fraser syndrome 1 
ENPP2                 0.007   autotaxin isoform 3 preproprotein 
ENPP2                 0.007   autotaxin isoform 2 preproprotein 
NAPG                  0.007   N-ethylmaleimide-sensitive factor attachment protein,...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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