Guide to the Human Genome
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Name: LOC100131076 Sequence: fasta or formatted (161aa) NCBI GI: 169166752
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {161aa} PREDICTED: hypothetical protein
alt mRNA {161aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         13           3
 C cysteine            1.9          3           1
 D aspartate           5.0          8           1
 E glutamate           9.3         15           2
 F phenylalanine       2.5          4           1
 G glycine             9.3         15           1
 H histidine           1.2          2           1
 I isoleucine          3.1          5           1
 K lysine              5.6          9           2
 L leucine             8.1         13           2
 M methionine          0.6          1           1
 N asparagine          1.9          3           1
 P proline             6.8         11           2
 Q glutamine           0.6          1           1
 R arginine           11.2         18           2
 S serine              8.1         13           2
 T threonine           3.1          5           1
 V valine              6.8         11           1
 W tryptophan          4.3          7           2
 Y tyrosine            2.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131076          1.000   PREDICTED: hypothetical protein 
LOC100131076          1.000   PREDICTED: hypothetical protein 
PAQR6                 0.022   progestin and adipoQ receptor family member VI isofo...
SFMBT2                0.022   Scm-like with four mbt domains 2 
LOC729983             0.016   PREDICTED: hypothetical protein 
LOC729983             0.016   PREDICTED: hypothetical protein 
LOC100292576          0.016   PREDICTED: hypothetical protein 
LOC100288860          0.016   PREDICTED: hypothetical protein 
LOC100288860          0.016   PREDICTED: hypothetical protein XP_002343712 
CDKN2B                0.010   cyclin-dependent kinase inhibitor 2B isoform 2 [Homo...
LOC100292600          0.010   PREDICTED: hypothetical protein 
LOC100288788          0.010   PREDICTED: similar to RNA binding motif protein, X-...
LOC100289949          0.010   PREDICTED: hypothetical protein XP_002346877 
LOC100290191          0.010   PREDICTED: hypothetical protein XP_002346744 
LOC100288788          0.010   PREDICTED: hypothetical protein XP_002343863 
LOC100289641          0.010   PREDICTED: hypothetical protein XP_002342602 
LOC100290783          0.010   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.010   PREDICTED: hypothetical protein XP_002343435 
NLGN2                 0.010   neuroligin 2 
AKR1C2                0.010   aldo-keto reductase family 1, member C2 
AKR1C2                0.010   aldo-keto reductase family 1, member C2 
AKR1C1                0.010   aldo-keto reductase family 1, member C1 
LOC100293285          0.010   PREDICTED: hypothetical protein 
LOC100293687          0.010   PREDICTED: hypothetical protein 
LOC100292383          0.010   PREDICTED: hypothetical protein 
LOC100289533          0.010   PREDICTED: hypothetical protein 
LOC100289533          0.010   PREDICTED: hypothetical protein XP_002343635 
LOXL3                 0.010   lysyl oxidase-like 3 precursor 
INHA                  0.006   inhibin alpha subunit precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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