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Search of human proteins with 169162826
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169162826 PREDICTED: hypothetical protein [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161777 PREDICTED: hypothetical protein [Homo sapiens] 394 e-110
gi|169161622 PREDICTED: hypothetical protein [Homo sapiens] 394 e-110
gi|169162826 PREDICTED: hypothetical protein [Homo sapiens] 394 e-110
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.010
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 35 0.039
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 34 0.066
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 34 0.087
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 34 0.087
gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ... 34 0.087
gi|239756274 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo ... 33 0.15
gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo ... 33 0.15
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 33 0.19
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.19
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.19
gi|7706469 Kruppel-like factor [Homo sapiens] 32 0.25
gi|19924099 synapsin I isoform Ia [Homo sapiens] 32 0.25
gi|19924097 synapsin I isoform Ib [Homo sapiens] 32 0.25
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 32 0.33
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 32 0.33
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens] 32 0.33
gi|21536402 bridging integrator 1 isoform 2 [Homo sapiens] 32 0.43
gi|194440719 chondroadherin-like [Homo sapiens] 32 0.43
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 32 0.43
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 32 0.43
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 32 0.43
gi|13775236 scratch [Homo sapiens] 32 0.43
gi|4885455 SH2B adaptor protein 3 [Homo sapiens] 31 0.56
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 31 0.56
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 31 0.56
>gi|169161777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 394 bits (1012), Expect = e-110
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60
MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD
Sbjct: 1 MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60
Query: 61 AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120
AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL
Sbjct: 61 AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120
Query: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180
PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR
Sbjct: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180
Query: 181 PPPLRLHLPG 190
PPPLRLHLPG
Sbjct: 181 PPPLRLHLPG 190
>gi|169161622 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 394 bits (1012), Expect = e-110
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60
MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD
Sbjct: 1 MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60
Query: 61 AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120
AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL
Sbjct: 61 AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120
Query: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180
PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR
Sbjct: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180
Query: 181 PPPLRLHLPG 190
PPPLRLHLPG
Sbjct: 181 PPPLRLHLPG 190
>gi|169162826 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 394 bits (1012), Expect = e-110
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60
MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD
Sbjct: 1 MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60
Query: 61 AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120
AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL
Sbjct: 61 AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120
Query: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180
PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR
Sbjct: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180
Query: 181 PPPLRLHLPG 190
PPPLRLHLPG
Sbjct: 181 PPPLRLHLPG 190
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.0 bits (84), Expect = 0.010
Identities = 39/128 (30%), Positives = 48/128 (37%), Gaps = 22/128 (17%)
Query: 30 PGWLLLCRLEDGGAA-AGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTS-PSLS 87
PG +L+ GG AG+ GP+ ++S A A+L G LT P
Sbjct: 516 PGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMG--LTGRPGPV 573
Query: 88 LTPGSGSEKREAG--GPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAV 145
PGSG K E G GP GP+ G PP P R RAG
Sbjct: 574 GPPGSGGLKGEPGDVGPQGPR----------------GVQGPPGPAGKPGRRGRAGSDGA 617
Query: 146 QTAPWQVG 153
+ P Q G
Sbjct: 618 RGMPGQTG 625
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 35.0 bits (79), Expect = 0.039
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 66 AQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTA 125
+Q RK +S +++ + PG S G G R A+PG PAG
Sbjct: 165 SQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPG 224
Query: 126 DPPPP 130
PPPP
Sbjct: 225 GPPPP 229
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 34.3 bits (77), Expect = 0.066
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 94 SEKREAGGPTGPKREDSALPGASTSHLPAG----------TADPPPPQAGL 134
S+ + GP P R ++PGA S P+G PPPPQAGL
Sbjct: 8 SQDADPSGPEQPDRVACSVPGARASPAPSGPRGMQQPPPPPQPPPPPQAGL 58
>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 33.9 bits (76), Expect = 0.087
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 63 GLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKR----------EAGGPTGPK--REDS 110
G A L P R + +L + S + +G +R A GP P+ R
Sbjct: 73 GRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRH 132
Query: 111 ALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVE 155
LPG S LPA P P G R+ R G ++ AP + G E
Sbjct: 133 RLPGGSR-RLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPE 176
>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
sapiens]
Length = 296
Score = 33.9 bits (76), Expect = 0.087
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 63 GLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKR----------EAGGPTGPK--REDS 110
G A L P R + +L + S + +G +R A GP P+ R
Sbjct: 73 GRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRH 132
Query: 111 ALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVE 155
LPG S LPA P P G R+ R G ++ AP + G E
Sbjct: 133 RLPGGSR-RLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPE 176
>gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
sapiens]
Length = 296
Score = 33.9 bits (76), Expect = 0.087
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 63 GLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKR----------EAGGPTGPK--REDS 110
G A L P R + +L + S + +G +R A GP P+ R
Sbjct: 73 GRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRH 132
Query: 111 ALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVE 155
LPG S LPA P P G R+ R G ++ AP + G E
Sbjct: 133 RLPGGSR-RLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPE 176
>gi|239756274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 775
Score = 33.1 bits (74), Expect = 0.15
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 13/131 (9%)
Query: 33 LLLCRLEDGGAAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTSPSLSLTPGS 92
LL +LED GA G RD + G AQL+ PG + + E T + + P +
Sbjct: 560 LLQLQLEDAGA-----GRALLHRDRGKEGGDRSAQLV-PGAEAQSAAEGTERARDVLPAA 613
Query: 93 GSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQV 152
K +R LP + + L + P PQ+G VRD+ + +
Sbjct: 614 ---KVPPAAVAPSQRRSGTLPPSPRASL----SPPAGPQSGSVRDAAFPRVRQPAGSLKR 666
Query: 153 GVELGVWVGLG 163
G LG + G
Sbjct: 667 GAPLGTLLPFG 677
>gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo
sapiens]
Length = 765
Score = 33.1 bits (74), Expect = 0.15
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 13/131 (9%)
Query: 33 LLLCRLEDGGAAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTSPSLSLTPGS 92
LL +LED GA G RD + G AQL+ PG + + E T + + P +
Sbjct: 550 LLQLQLEDAGA-----GRALLHRDRGKEGGDRSAQLV-PGAEAQSAAEGTERARDVLPAA 603
Query: 93 GSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQV 152
K +R LP + + L + P PQ+G VRD+ + +
Sbjct: 604 ---KVPPAAVAPSQRRSGTLPPSPRASL----SPPAGPQSGSVRDAAFPRVRQPAGSLKR 656
Query: 153 GVELGVWVGLG 163
G LG + G
Sbjct: 657 GAPLGTLLPFG 667
>gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo
sapiens]
Length = 765
Score = 33.1 bits (74), Expect = 0.15
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 13/131 (9%)
Query: 33 LLLCRLEDGGAAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTSPSLSLTPGS 92
LL +LED GA G RD + G AQL+ PG + + E T + + P +
Sbjct: 550 LLQLQLEDAGA-----GRALLHRDRGKEGGDRSAQLV-PGAEAQSAAEGTERARDVLPAA 603
Query: 93 GSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQV 152
K +R LP + + L + P PQ+G VRD+ + +
Sbjct: 604 ---KVPPAAVAPSQRRSGTLPPSPRASL----SPPAGPQSGSVRDAAFPRVRQPAGSLKR 656
Query: 153 GVELGVWVGLG 163
G LG + G
Sbjct: 657 GAPLGTLLPFG 667
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 32.7 bits (73), Expect = 0.19
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 90 PGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAP 149
P S SE++ P P+R LP T H P PP + + R G+ +Q P
Sbjct: 2059 PSSASERQAPRAPQSPRRPPHPLPPRLTIHAPPQELGPPVQRIQMTRRQSVGR-GLQLTP 2117
Query: 150 WQVGVE 155
G++
Sbjct: 2118 GIGGMQ 2123
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.7 bits (73), Expect = 0.19
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 90 PGSGSEKREAGGP-------TGPKREDSALPG-ASTSHLPAGTADPPPPQAGLVRDSRAG 141
PG G + GP TGP + S LPG A G A PPP Q G +
Sbjct: 444 PGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQ 503
Query: 142 QTAVQTAPWQVG 153
+ + P Q G
Sbjct: 504 PGSTKPPPQQPG 515
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.7 bits (73), Expect = 0.19
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 90 PGSGSEKREAGGP-------TGPKREDSALPG-ASTSHLPAGTADPPPPQAGLVRDSRAG 141
PG G + GP TGP + S LPG A G A PPP Q G +
Sbjct: 444 PGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQ 503
Query: 142 QTAVQTAPWQVG 153
+ + P Q G
Sbjct: 504 PGSTKPPPQQPG 515
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 32.3 bits (72), Expect = 0.25
Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 61 AGGLDAQLLQP-----------GR----KKNRSWELTSPSLSLTPGSGSEKREAGGPTGP 105
AGGL ++LL+P GR R + P G G GP G
Sbjct: 88 AGGLVSELLRPELDAPLGPALHGRFLLAPPGRLVKAEPPEADGGGGYGCAPGLTRGPRGL 147
Query: 106 KREDSALPGASTSHLPAGTADPPPPQAGLVRDSRA 140
KRE + P AS P G PPP L D A
Sbjct: 148 KREGAPGPAASCMRGPGGRPPPPPDTPPLSPDGPA 182
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 32.3 bits (72), Expect = 0.25
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 83 SPSLSLTPGSGSEKREAGGPTG----------PKREDSALPGASTSHLPAGTADPPPPQA 132
+P + P S S +R+AG P P + A PG G PP A
Sbjct: 542 APPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ---GPPQKPPGPA 598
Query: 133 GLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVRPPP 183
G R + +T P + G G G +PQLA Q PPP
Sbjct: 599 GPTRQASQAGPVPRTGP--PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPP 647
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 32.3 bits (72), Expect = 0.25
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 83 SPSLSLTPGSGSEKREAGGPTG----------PKREDSALPGASTSHLPAGTADPPPPQA 132
+P + P S S +R+AG P P + A PG G PP A
Sbjct: 542 APPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ---GPPQKPPGPA 598
Query: 133 GLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVRPPP 183
G R + +T P + G G G +PQLA Q PPP
Sbjct: 599 GPTRQASQAGPVPRTGP--PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPP 647
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 32.0 bits (71), Expect = 0.33
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 104 GPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAP 149
GPKRE P A + P+G ++PP Q L DS AG+ A P
Sbjct: 428 GPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDS-AGEGAPGREP 472
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 32.0 bits (71), Expect = 0.33
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 104 GPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAP 149
GPKRE P A + P+G ++PP Q L DS AG+ A P
Sbjct: 491 GPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDS-AGEGAPGREP 535
>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 387
Score = 32.0 bits (71), Expect = 0.33
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 104 GPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAP 149
GPKRE P A + P+G ++PP Q L DS AG+ A P
Sbjct: 195 GPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDS-AGEGAPGREP 239
>gi|21536402 bridging integrator 1 isoform 2 [Homo sapiens]
Length = 550
Score = 31.6 bits (70), Expect = 0.43
Identities = 43/150 (28%), Positives = 54/150 (36%), Gaps = 33/150 (22%)
Query: 41 GGAAAGATGPVTKKRDSHLDAGG----------LDAQLLQPGRKKNRSWELTSPSLSLTP 90
GGA GAT P K S +A G LD L P +TSP + TP
Sbjct: 320 GGATPGATLP---KSPSQFEAPGPFSEQASLLDLDFDPLPP---------VTSPVKAPTP 367
Query: 91 GSGS------EKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTA 144
S E E+ + P E SA G P+ TA+P P Q + A + A
Sbjct: 368 SGQSIPWDLWEPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQ-----PAEASEVA 422
Query: 145 VQTAPWQVGVELGVWVGLGSCGSLRPQLAV 174
T P E G + S P + V
Sbjct: 423 GGTQPAAGAQEPGETAASEAASSSLPAVVV 452
>gi|194440719 chondroadherin-like [Homo sapiens]
Length = 762
Score = 31.6 bits (70), Expect = 0.43
Identities = 38/144 (26%), Positives = 48/144 (33%), Gaps = 24/144 (16%)
Query: 8 PGYFRVLQSAGRS--CGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLDAGGLD 65
PG R L+ G CG A P WL R+ GA G + R LDA
Sbjct: 299 PGQLRRLRLQGNPLWCGCQAR-PLLEWLARARVRSDGACQGPR----RLRGEALDA---- 349
Query: 66 AQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTA 125
R W+L P + E+R GP P R PG + P A
Sbjct: 350 ----------LRPWDLRCPGDAAQEEEELEERAVAGPRAPPRGPPRGPGEERAVAPCPRA 399
Query: 126 DPPPPQAGLVRDSRAGQTAVQTAP 149
P++ R S +Q P
Sbjct: 400 CVCVPES---RHSSCEGCGLQAVP 420
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 31.6 bits (70), Expect = 0.43
Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 3/118 (2%)
Query: 39 EDGGAAAGATG-PVTKKRDSHLDAGGLDAQLLQPGRKKNRSW--ELTSPSLSLTPGSGSE 95
+ G +AAG G P R GL PG K + P L PG+ E
Sbjct: 304 DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGE 363
Query: 96 KREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVG 153
+ EAG P +R + PG +GT P + +G + P Q G
Sbjct: 364 RGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKG 421
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 31.6 bits (70), Expect = 0.43
Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 3/118 (2%)
Query: 39 EDGGAAAGATG-PVTKKRDSHLDAGGLDAQLLQPGRKKNRSW--ELTSPSLSLTPGSGSE 95
+ G +AAG G P R GL PG K + P L PG+ E
Sbjct: 304 DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGE 363
Query: 96 KREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVG 153
+ EAG P +R + PG +GT P + +G + P Q G
Sbjct: 364 RGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKG 421
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 31.6 bits (70), Expect = 0.43
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 83 SPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQ 142
SP T + S R AG P P A P ASTS LPA PP + SRAG+
Sbjct: 634 SPDSPATLLARSAWRSAGSPASPLVPVRAGPWASTSRLPA-----PPARTLHASLSRAGR 688
Query: 143 TAV 145
+ V
Sbjct: 689 SQV 691
>gi|13775236 scratch [Homo sapiens]
Length = 348
Score = 31.6 bits (70), Expect = 0.43
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 23/130 (17%)
Query: 28 PRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLDAGG-------------LDAQLLQPGRK 74
P P + R E G AAAG+ P T + + AGG DA + GR
Sbjct: 65 PEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFITDGRS 124
Query: 75 KNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGL 134
+ ++ S + T + + +AGG GA L +G +AG
Sbjct: 125 RRKASNAGSAAAPSTASAAAPDGDAGGG----------GGAGGRSLGSGPGGRGGTRAGA 174
Query: 135 VRDSRAGQTA 144
++RAG A
Sbjct: 175 GTEARAGPGA 184
>gi|4885455 SH2B adaptor protein 3 [Homo sapiens]
Length = 575
Score = 31.2 bits (69), Expect = 0.56
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 99 AGGPTGPKREDSALPGASTSHLPAGTADPPPPQA---GLVRDSRAGQTAVQT-APWQVG 153
A G G E A PG + LP A PPP+A ++R S A + ++ + A WQ G
Sbjct: 162 APGTPGEAAETPARPGLAKKFLPWSLAREPPPEALKEAVLRYSLADEASMDSGARWQRG 220
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 31.2 bits (69), Expect = 0.56
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 43 AAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTS---PSLSL-TPGSGSEKRE 98
AA GA G DS + GG A ++N+ E S P LS TP S + +
Sbjct: 24 AAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSSHQFGD 83
Query: 99 AGGPTGPKREDSALPGASTSHLPAGT 124
G P P+ + PGA + P GT
Sbjct: 84 PGQPGDPEGREDQGPGAGVA--PRGT 107
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 31.2 bits (69), Expect = 0.56
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 43 AAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTS---PSLSL-TPGSGSEKRE 98
AA GA G DS + GG A ++N+ E S P LS TP S + +
Sbjct: 24 AAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSSHQFGD 83
Query: 99 AGGPTGPKREDSALPGASTSHLPAGT 124
G P P+ + PGA + P GT
Sbjct: 84 PGQPGDPEGREDQGPGAGVA--PRGT 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,354,106
Number of Sequences: 37866
Number of extensions: 588857
Number of successful extensions: 2803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 2624
Number of HSP's gapped (non-prelim): 356
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.