Guide to the Human Genome
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Search of human proteins with 169162826

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169162826 PREDICTED: hypothetical protein [Homo sapiens]
         (190 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169161777 PREDICTED: hypothetical protein [Homo sapiens]           394   e-110
gi|169161622 PREDICTED: hypothetical protein [Homo sapiens]           394   e-110
gi|169162826 PREDICTED: hypothetical protein [Homo sapiens]           394   e-110
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       37   0.010
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ...    35   0.039
gi|197276594 RNA binding motif protein 20 [Homo sapiens]               34   0.066
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]            34   0.087
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ...    34   0.087
gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ...    34   0.087
gi|239756274 PREDICTED: hypothetical protein [Homo sapiens]            33   0.15 
gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo ...    33   0.15 
gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo ...    33   0.15 
gi|114155142 nuclear pore complex-associated protein TPR [Homo s...    33   0.19 
gi|150170670 piccolo isoform 2 [Homo sapiens]                          33   0.19 
gi|150378539 piccolo isoform 1 [Homo sapiens]                          33   0.19 
gi|7706469 Kruppel-like factor [Homo sapiens]                          32   0.25 
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       32   0.25 
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       32   0.25 
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]      32   0.33 
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ...    32   0.33 
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]      32   0.33 
gi|21536402 bridging integrator 1 isoform 2 [Homo sapiens]             32   0.43 
gi|194440719 chondroadherin-like [Homo sapiens]                        32   0.43 
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]       32   0.43 
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]       32   0.43 
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ...    32   0.43 
gi|13775236 scratch [Homo sapiens]                                     32   0.43 
gi|4885455 SH2B adaptor protein 3 [Homo sapiens]                       31   0.56 
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph...    31   0.56 
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph...    31   0.56 

>gi|169161777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 190

 Score =  394 bits (1012), Expect = e-110
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60
           MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD
Sbjct: 1   MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60

Query: 61  AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120
           AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL
Sbjct: 61  AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120

Query: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180
           PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR
Sbjct: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180

Query: 181 PPPLRLHLPG 190
           PPPLRLHLPG
Sbjct: 181 PPPLRLHLPG 190


>gi|169161622 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 190

 Score =  394 bits (1012), Expect = e-110
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60
           MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD
Sbjct: 1   MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60

Query: 61  AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120
           AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL
Sbjct: 61  AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120

Query: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180
           PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR
Sbjct: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180

Query: 181 PPPLRLHLPG 190
           PPPLRLHLPG
Sbjct: 181 PPPLRLHLPG 190


>gi|169162826 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 190

 Score =  394 bits (1012), Expect = e-110
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60
           MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD
Sbjct: 1   MRFRRLTPGYFRVLQSAGRSCGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLD 60

Query: 61  AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120
           AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL
Sbjct: 61  AGGLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHL 120

Query: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180
           PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR
Sbjct: 121 PAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVR 180

Query: 181 PPPLRLHLPG 190
           PPPLRLHLPG
Sbjct: 181 PPPLRLHLPG 190


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 37.0 bits (84), Expect = 0.010
 Identities = 39/128 (30%), Positives = 48/128 (37%), Gaps = 22/128 (17%)

Query: 30  PGWLLLCRLEDGGAA-AGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTS-PSLS 87
           PG +L+     GG   AG+ GP+   ++S   A    A+L   G        LT  P   
Sbjct: 516 PGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMG--LTGRPGPV 573

Query: 88  LTPGSGSEKREAG--GPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAV 145
             PGSG  K E G  GP GP+                G   PP P     R  RAG    
Sbjct: 574 GPPGSGGLKGEPGDVGPQGPR----------------GVQGPPGPAGKPGRRGRAGSDGA 617

Query: 146 QTAPWQVG 153
           +  P Q G
Sbjct: 618 RGMPGQTG 625


>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
           subunit [Homo sapiens]
          Length = 551

 Score = 35.0 bits (79), Expect = 0.039
 Identities = 20/65 (30%), Positives = 27/65 (41%)

Query: 66  AQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTA 125
           +Q     RK  +S +++    +  PG  S      G  G  R   A+PG      PAG  
Sbjct: 165 SQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPG 224

Query: 126 DPPPP 130
            PPPP
Sbjct: 225 GPPPP 229


>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
          Length = 1227

 Score = 34.3 bits (77), Expect = 0.066
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 94  SEKREAGGPTGPKREDSALPGASTSHLPAG----------TADPPPPQAGL 134
           S+  +  GP  P R   ++PGA  S  P+G             PPPPQAGL
Sbjct: 8   SQDADPSGPEQPDRVACSVPGARASPAPSGPRGMQQPPPPPQPPPPPQAGL 58


>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 296

 Score = 33.9 bits (76), Expect = 0.087
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 63  GLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKR----------EAGGPTGPK--REDS 110
           G  A  L P R  +   +L + S +    +G  +R           A GP  P+  R   
Sbjct: 73  GRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRH 132

Query: 111 ALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVE 155
            LPG S   LPA     P P  G  R+ R G  ++  AP + G E
Sbjct: 133 RLPGGSR-RLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPE 176


>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
           sapiens]
          Length = 296

 Score = 33.9 bits (76), Expect = 0.087
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 63  GLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKR----------EAGGPTGPK--REDS 110
           G  A  L P R  +   +L + S +    +G  +R           A GP  P+  R   
Sbjct: 73  GRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRH 132

Query: 111 ALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVE 155
            LPG S   LPA     P P  G  R+ R G  ++  AP + G E
Sbjct: 133 RLPGGSR-RLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPE 176


>gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
           sapiens]
          Length = 296

 Score = 33.9 bits (76), Expect = 0.087
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 63  GLDAQLLQPGRKKNRSWELTSPSLSLTPGSGSEKR----------EAGGPTGPK--REDS 110
           G  A  L P R  +   +L + S +    +G  +R           A GP  P+  R   
Sbjct: 73  GRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRH 132

Query: 111 ALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVGVE 155
            LPG S   LPA     P P  G  R+ R G  ++  AP + G E
Sbjct: 133 RLPGGSR-RLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPE 176


>gi|239756274 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 775

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 13/131 (9%)

Query: 33  LLLCRLEDGGAAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTSPSLSLTPGS 92
           LL  +LED GA     G     RD   + G   AQL+ PG +   + E T  +  + P +
Sbjct: 560 LLQLQLEDAGA-----GRALLHRDRGKEGGDRSAQLV-PGAEAQSAAEGTERARDVLPAA 613

Query: 93  GSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQV 152
              K         +R    LP +  + L    + P  PQ+G VRD+   +        + 
Sbjct: 614 ---KVPPAAVAPSQRRSGTLPPSPRASL----SPPAGPQSGSVRDAAFPRVRQPAGSLKR 666

Query: 153 GVELGVWVGLG 163
           G  LG  +  G
Sbjct: 667 GAPLGTLLPFG 677


>gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo
           sapiens]
          Length = 765

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 13/131 (9%)

Query: 33  LLLCRLEDGGAAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTSPSLSLTPGS 92
           LL  +LED GA     G     RD   + G   AQL+ PG +   + E T  +  + P +
Sbjct: 550 LLQLQLEDAGA-----GRALLHRDRGKEGGDRSAQLV-PGAEAQSAAEGTERARDVLPAA 603

Query: 93  GSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQV 152
              K         +R    LP +  + L    + P  PQ+G VRD+   +        + 
Sbjct: 604 ---KVPPAAVAPSQRRSGTLPPSPRASL----SPPAGPQSGSVRDAAFPRVRQPAGSLKR 656

Query: 153 GVELGVWVGLG 163
           G  LG  +  G
Sbjct: 657 GAPLGTLLPFG 667


>gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo
           sapiens]
          Length = 765

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 13/131 (9%)

Query: 33  LLLCRLEDGGAAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTSPSLSLTPGS 92
           LL  +LED GA     G     RD   + G   AQL+ PG +   + E T  +  + P +
Sbjct: 550 LLQLQLEDAGA-----GRALLHRDRGKEGGDRSAQLV-PGAEAQSAAEGTERARDVLPAA 603

Query: 93  GSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQV 152
              K         +R    LP +  + L    + P  PQ+G VRD+   +        + 
Sbjct: 604 ---KVPPAAVAPSQRRSGTLPPSPRASL----SPPAGPQSGSVRDAAFPRVRQPAGSLKR 656

Query: 153 GVELGVWVGLG 163
           G  LG  +  G
Sbjct: 657 GAPLGTLLPFG 667


>gi|114155142 nuclear pore complex-associated protein TPR [Homo
            sapiens]
          Length = 2363

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 90   PGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAP 149
            P S SE++    P  P+R    LP   T H P     PP  +  + R    G+  +Q  P
Sbjct: 2059 PSSASERQAPRAPQSPRRPPHPLPPRLTIHAPPQELGPPVQRIQMTRRQSVGR-GLQLTP 2117

Query: 150  WQVGVE 155
               G++
Sbjct: 2118 GIGGMQ 2123


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 90  PGSGSEKREAGGP-------TGPKREDSALPG-ASTSHLPAGTADPPPPQAGLVRDSRAG 141
           PG G    +  GP       TGP +  S LPG A       G A PPP Q G  +     
Sbjct: 444 PGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQ 503

Query: 142 QTAVQTAPWQVG 153
             + +  P Q G
Sbjct: 504 PGSTKPPPQQPG 515


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 90  PGSGSEKREAGGP-------TGPKREDSALPG-ASTSHLPAGTADPPPPQAGLVRDSRAG 141
           PG G    +  GP       TGP +  S LPG A       G A PPP Q G  +     
Sbjct: 444 PGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQ 503

Query: 142 QTAVQTAPWQVG 153
             + +  P Q G
Sbjct: 504 PGSTKPPPQQPG 515


>gi|7706469 Kruppel-like factor [Homo sapiens]
          Length = 355

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 15/95 (15%)

Query: 61  AGGLDAQLLQP-----------GR----KKNRSWELTSPSLSLTPGSGSEKREAGGPTGP 105
           AGGL ++LL+P           GR       R  +   P      G G       GP G 
Sbjct: 88  AGGLVSELLRPELDAPLGPALHGRFLLAPPGRLVKAEPPEADGGGGYGCAPGLTRGPRGL 147

Query: 106 KREDSALPGASTSHLPAGTADPPPPQAGLVRDSRA 140
           KRE +  P AS    P G   PPP    L  D  A
Sbjct: 148 KREGAPGPAASCMRGPGGRPPPPPDTPPLSPDGPA 182


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 15/111 (13%)

Query: 83  SPSLSLTPGSGSEKREAGGPTG----------PKREDSALPGASTSHLPAGTADPPPPQA 132
           +P  +  P S S +R+AG P            P +   A PG        G    PP  A
Sbjct: 542 APPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ---GPPQKPPGPA 598

Query: 133 GLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVRPPP 183
           G  R +       +T P     +     G G  G  +PQLA    Q  PPP
Sbjct: 599 GPTRQASQAGPVPRTGP--PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPP 647


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 15/111 (13%)

Query: 83  SPSLSLTPGSGSEKREAGGPTG----------PKREDSALPGASTSHLPAGTADPPPPQA 132
           +P  +  P S S +R+AG P            P +   A PG        G    PP  A
Sbjct: 542 APPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ---GPPQKPPGPA 598

Query: 133 GLVRDSRAGQTAVQTAPWQVGVELGVWVGLGSCGSLRPQLAVNLIQVRPPP 183
           G  R +       +T P     +     G G  G  +PQLA    Q  PPP
Sbjct: 599 GPTRQASQAGPVPRTGP--PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPP 647


>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
          Length = 528

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 104 GPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAP 149
           GPKRE    P A  +  P+G ++PP  Q  L  DS AG+ A    P
Sbjct: 428 GPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDS-AGEGAPGREP 472


>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
           sapiens]
          Length = 591

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 104 GPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAP 149
           GPKRE    P A  +  P+G ++PP  Q  L  DS AG+ A    P
Sbjct: 491 GPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDS-AGEGAPGREP 535


>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
          Length = 387

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 104 GPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAP 149
           GPKRE    P A  +  P+G ++PP  Q  L  DS AG+ A    P
Sbjct: 195 GPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDS-AGEGAPGREP 239


>gi|21536402 bridging integrator 1 isoform 2 [Homo sapiens]
          Length = 550

 Score = 31.6 bits (70), Expect = 0.43
 Identities = 43/150 (28%), Positives = 54/150 (36%), Gaps = 33/150 (22%)

Query: 41  GGAAAGATGPVTKKRDSHLDAGG----------LDAQLLQPGRKKNRSWELTSPSLSLTP 90
           GGA  GAT P   K  S  +A G          LD   L P         +TSP  + TP
Sbjct: 320 GGATPGATLP---KSPSQFEAPGPFSEQASLLDLDFDPLPP---------VTSPVKAPTP 367

Query: 91  GSGS------EKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTA 144
              S      E  E+   + P  E SA  G      P+ TA+P P Q      + A + A
Sbjct: 368 SGQSIPWDLWEPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQ-----PAEASEVA 422

Query: 145 VQTAPWQVGVELGVWVGLGSCGSLRPQLAV 174
             T P     E G      +  S  P + V
Sbjct: 423 GGTQPAAGAQEPGETAASEAASSSLPAVVV 452


>gi|194440719 chondroadherin-like [Homo sapiens]
          Length = 762

 Score = 31.6 bits (70), Expect = 0.43
 Identities = 38/144 (26%), Positives = 48/144 (33%), Gaps = 24/144 (16%)

Query: 8   PGYFRVLQSAGRS--CGYSASCPRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLDAGGLD 65
           PG  R L+  G    CG  A  P   WL   R+   GA  G      + R   LDA    
Sbjct: 299 PGQLRRLRLQGNPLWCGCQAR-PLLEWLARARVRSDGACQGPR----RLRGEALDA---- 349

Query: 66  AQLLQPGRKKNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTA 125
                      R W+L  P  +       E+R   GP  P R     PG   +  P   A
Sbjct: 350 ----------LRPWDLRCPGDAAQEEEELEERAVAGPRAPPRGPPRGPGEERAVAPCPRA 399

Query: 126 DPPPPQAGLVRDSRAGQTAVQTAP 149
               P++   R S      +Q  P
Sbjct: 400 CVCVPES---RHSSCEGCGLQAVP 420


>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
          Length = 654

 Score = 31.6 bits (70), Expect = 0.43
 Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 39  EDGGAAAGATG-PVTKKRDSHLDAGGLDAQLLQPGRKKNRSW--ELTSPSLSLTPGSGSE 95
           + G +AAG  G P    R       GL      PG K    +      P L   PG+  E
Sbjct: 304 DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGE 363

Query: 96  KREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVG 153
           + EAG P   +R +   PG       +GT  P   +        +G    +  P Q G
Sbjct: 364 RGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKG 421


>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
          Length = 642

 Score = 31.6 bits (70), Expect = 0.43
 Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 39  EDGGAAAGATG-PVTKKRDSHLDAGGLDAQLLQPGRKKNRSW--ELTSPSLSLTPGSGSE 95
           + G +AAG  G P    R       GL      PG K    +      P L   PG+  E
Sbjct: 304 DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGE 363

Query: 96  KREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQTAVQTAPWQVG 153
           + EAG P   +R +   PG       +GT  P   +        +G    +  P Q G
Sbjct: 364 RGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKG 421


>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 3 [Homo sapiens]
          Length = 774

 Score = 31.6 bits (70), Expect = 0.43
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 83  SPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQ 142
           SP    T  + S  R AG P  P     A P ASTS LPA     PP +      SRAG+
Sbjct: 634 SPDSPATLLARSAWRSAGSPASPLVPVRAGPWASTSRLPA-----PPARTLHASLSRAGR 688

Query: 143 TAV 145
           + V
Sbjct: 689 SQV 691


>gi|13775236 scratch [Homo sapiens]
          Length = 348

 Score = 31.6 bits (70), Expect = 0.43
 Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 23/130 (17%)

Query: 28  PRPGWLLLCRLEDGGAAAGATGPVTKKRDSHLDAGG-------------LDAQLLQPGRK 74
           P P +    R E G AAAG+  P T + +    AGG              DA  +  GR 
Sbjct: 65  PEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFITDGRS 124

Query: 75  KNRSWELTSPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGL 134
           + ++    S +   T  + +   +AGG            GA    L +G       +AG 
Sbjct: 125 RRKASNAGSAAAPSTASAAAPDGDAGGG----------GGAGGRSLGSGPGGRGGTRAGA 174

Query: 135 VRDSRAGQTA 144
             ++RAG  A
Sbjct: 175 GTEARAGPGA 184


>gi|4885455 SH2B adaptor protein 3 [Homo sapiens]
          Length = 575

 Score = 31.2 bits (69), Expect = 0.56
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 99  AGGPTGPKREDSALPGASTSHLPAGTADPPPPQA---GLVRDSRAGQTAVQT-APWQVG 153
           A G  G   E  A PG +   LP   A  PPP+A    ++R S A + ++ + A WQ G
Sbjct: 162 APGTPGEAAETPARPGLAKKFLPWSLAREPPPEALKEAVLRYSLADEASMDSGARWQRG 220


>gi|239752994 PREDICTED: achaete-scute complex homolog 5
           (Drosophila) [Homo sapiens]
          Length = 313

 Score = 31.2 bits (69), Expect = 0.56
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 43  AAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTS---PSLSL-TPGSGSEKRE 98
           AA GA G      DS +  GG  A       ++N+  E  S   P LS  TP S  +  +
Sbjct: 24  AAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSSHQFGD 83

Query: 99  AGGPTGPKREDSALPGASTSHLPAGT 124
            G P  P+  +   PGA  +  P GT
Sbjct: 84  PGQPGDPEGREDQGPGAGVA--PRGT 107


>gi|239747548 PREDICTED: achaete-scute complex homolog 5
           (Drosophila) [Homo sapiens]
          Length = 313

 Score = 31.2 bits (69), Expect = 0.56
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 43  AAAGATGPVTKKRDSHLDAGGLDAQLLQPGRKKNRSWELTS---PSLSL-TPGSGSEKRE 98
           AA GA G      DS +  GG  A       ++N+  E  S   P LS  TP S  +  +
Sbjct: 24  AAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSSHQFGD 83

Query: 99  AGGPTGPKREDSALPGASTSHLPAGT 124
            G P  P+  +   PGA  +  P GT
Sbjct: 84  PGQPGDPEGREDQGPGAGVA--PRGT 107


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,354,106
Number of Sequences: 37866
Number of extensions: 588857
Number of successful extensions: 2803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 2624
Number of HSP's gapped (non-prelim): 356
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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