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Search of human proteins with 169162824
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169162824 PREDICTED: similar to hCG1981735 [Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169162126 PREDICTED: similar to hCG1981735 [Homo sapiens] 323 4e-89
gi|169162824 PREDICTED: similar to hCG1981735 [Homo sapiens] 323 4e-89
gi|239752724 PREDICTED: similar to hCG1981735 [Homo sapiens] 322 1e-88
gi|239757543 PREDICTED: similar to eukaryotic translation elonga... 156 6e-39
gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [H... 156 6e-39
gi|4503471 eukaryotic translation elongation factor 1 alpha 1 [H... 154 2e-38
gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens] 73 9e-14
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens] 73 9e-14
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens] 73 9e-14
gi|46094014 peptide chain release factor 3 [Homo sapiens] 70 9e-13
gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform... 69 2e-12
gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1... 69 2e-12
gi|34147630 Tu translation elongation factor, mitochondrial prec... 40 6e-04
gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens] 30 1.1
gi|115495445 ankyrin repeat domain 30A [Homo sapiens] 29 1.9
gi|4503507 eukaryotic translation initiation factor 2, subunit 3... 28 3.2
gi|14150141 programmed cell death 2-like [Homo sapiens] 28 3.2
gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo ... 27 9.2
gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo ... 27 9.2
gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo ... 27 9.2
gi|216548193 RAD54-like protein [Homo sapiens] 27 9.2
gi|216548186 RAD54-like protein [Homo sapiens] 27 9.2
gi|149192843 hypothetical protein LOC54627 [Homo sapiens] 27 9.2
gi|116268109 nucleotide-binding oligomerization domains 27 [Homo... 27 9.2
>gi|169162126 PREDICTED: similar to hCG1981735 [Homo sapiens]
Length = 155
Score = 323 bits (828), Expect = 4e-89
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MGHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGE 60
MGHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGE
Sbjct: 1 MGHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGE 60
Query: 61 CEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKIS 120
CEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKIS
Sbjct: 61 CEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKIS 120
Query: 121 YNSQTLPFVPISGWHGDNMLEPGSKVRAGWAGPIK 155
YNSQTLPFVPISGWHGDNMLEPGSKVRAGWAGPIK
Sbjct: 121 YNSQTLPFVPISGWHGDNMLEPGSKVRAGWAGPIK 155
>gi|169162824 PREDICTED: similar to hCG1981735 [Homo sapiens]
Length = 155
Score = 323 bits (828), Expect = 4e-89
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MGHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGE 60
MGHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGE
Sbjct: 1 MGHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGE 60
Query: 61 CEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKIS 120
CEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKIS
Sbjct: 61 CEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKIS 120
Query: 121 YNSQTLPFVPISGWHGDNMLEPGSKVRAGWAGPIK 155
YNSQTLPFVPISGWHGDNMLEPGSKVRAGWAGPIK
Sbjct: 121 YNSQTLPFVPISGWHGDNMLEPGSKVRAGWAGPIK 155
>gi|239752724 PREDICTED: similar to hCG1981735 [Homo sapiens]
Length = 155
Score = 322 bits (824), Expect = 1e-88
Identities = 154/155 (99%), Positives = 155/155 (100%)
Query: 1 MGHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGE 60
MGHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSG+EDCAVLIVASGVGE
Sbjct: 1 MGHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGREDCAVLIVASGVGE 60
Query: 61 CEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKIS 120
CEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKIS
Sbjct: 61 CEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKIS 120
Query: 121 YNSQTLPFVPISGWHGDNMLEPGSKVRAGWAGPIK 155
YNSQTLPFVPISGWHGDNMLEPGSKVRAGWAGPIK
Sbjct: 121 YNSQTLPFVPISGWHGDNMLEPGSKVRAGWAGPIK 155
>gi|239757543 PREDICTED: similar to eukaryotic translation
elongation factor 1 alpha 2 [Homo sapiens]
Length = 444
Score = 156 bits (395), Expect = 6e-39
Identities = 90/151 (59%), Positives = 96/151 (63%), Gaps = 32/151 (21%)
Query: 2 GHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGEC 61
GH DFIKNMIT G SQA DCAVLIVA+GVGE
Sbjct: 94 GHRDFIKNMIT------------------GTSQA------------DCAVLIVAAGVGEF 123
Query: 62 EAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKISY 121
EAGISKN Q EH LLAYTLG+KQLIV VNKMD TEP YS ++EI KEV AYIKKI Y
Sbjct: 124 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGY 183
Query: 122 NSQTLPFVPISGWHGDNMLEPGSKVR--AGW 150
N T+PFVPISGWHGDNMLEP + GW
Sbjct: 184 NPATVPFVPISGWHGDNMLEPSPNMPWFKGW 214
>gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [Homo
sapiens]
Length = 463
Score = 156 bits (395), Expect = 6e-39
Identities = 90/151 (59%), Positives = 96/151 (63%), Gaps = 32/151 (21%)
Query: 2 GHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGEC 61
GH DFIKNMIT G SQA DCAVLIVA+GVGE
Sbjct: 94 GHRDFIKNMIT------------------GTSQA------------DCAVLIVAAGVGEF 123
Query: 62 EAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKISY 121
EAGISKN Q EH LLAYTLG+KQLIV VNKMD TEP YS ++EI KEV AYIKKI Y
Sbjct: 124 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGY 183
Query: 122 NSQTLPFVPISGWHGDNMLEPGSKVR--AGW 150
N T+PFVPISGWHGDNMLEP + GW
Sbjct: 184 NPATVPFVPISGWHGDNMLEPSPNMPWFKGW 214
>gi|4503471 eukaryotic translation elongation factor 1 alpha 1 [Homo
sapiens]
Length = 462
Score = 154 bits (390), Expect = 2e-38
Identities = 89/151 (58%), Positives = 96/151 (63%), Gaps = 32/151 (21%)
Query: 2 GHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGEC 61
GH DFIKNMIT G SQA DCAVLIVA+GVGE
Sbjct: 94 GHRDFIKNMIT------------------GTSQA------------DCAVLIVAAGVGEF 123
Query: 62 EAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKISY 121
EAGISKN Q EH LLAYTLG+KQLIV VNKMD TEPPYS +EEI KEV YIKKI Y
Sbjct: 124 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 183
Query: 122 NSQTLPFVPISGWHGDNMLEPGSKVR--AGW 150
N T+ FVPISGW+GDNMLEP + + GW
Sbjct: 184 NPDTVAFVPISGWNGDNMLEPSANMPWFKGW 214
>gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens]
Length = 499
Score = 73.2 bits (178), Expect = 9e-14
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 44 SGQEDCAVLIVASGVGECEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSST 103
+ Q D AVL++++ GE E G K Q EH +LA T G+K LIV +NKMD +S+
Sbjct: 173 ASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNE 232
Query: 104 CFEEISKEVKAYIKKISYN-SQTLPFVPISGWHGDNMLE 141
+EE +++ ++KK+ +N + + F+P SG G N+ E
Sbjct: 233 RYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE 271
>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
Length = 636
Score = 73.2 bits (178), Expect = 9e-14
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 44 SGQEDCAVLIVASGVGECEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSST 103
+ Q D AVL++++ GE E G K Q EH +LA T G+K LIV +NKMD +S+
Sbjct: 310 ASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNE 369
Query: 104 CFEEISKEVKAYIKKISYN-SQTLPFVPISGWHGDNMLE 141
+EE +++ ++KK+ +N + + F+P SG G N+ E
Sbjct: 370 RYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE 408
>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
Length = 637
Score = 73.2 bits (178), Expect = 9e-14
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 44 SGQEDCAVLIVASGVGECEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSST 103
+ Q D AVL++++ GE E G K Q EH +LA T G+K LIV +NKMD +S+
Sbjct: 311 ASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNE 370
Query: 104 CFEEISKEVKAYIKKISYN-SQTLPFVPISGWHGDNMLE 141
+EE +++ ++KK+ +N + + F+P SG G N+ E
Sbjct: 371 RYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE 409
>gi|46094014 peptide chain release factor 3 [Homo sapiens]
Length = 628
Score = 69.7 bits (169), Expect = 9e-13
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 44 SGQEDCAVLIVASGVGECEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSST 103
+ Q D AVL++++ GE E G K Q EH +LA T G+K LIV +NKMD +S
Sbjct: 302 ASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIE 361
Query: 104 CFEEISKEVKAYIKKISYN-SQTLPFVPISGWHGDNMLE 141
+EE +++ ++KK+ ++ + + F+P SG G N+ E
Sbjct: 362 RYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKE 400
>gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform 2
[Homo sapiens]
Length = 642
Score = 68.6 bits (166), Expect = 2e-12
Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 32/139 (23%)
Query: 2 GHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGEC 61
GH DFI NMIT G +QA D AVL+V + GE
Sbjct: 305 GHKDFIPNMIT------------------GAAQA------------DVAVLVVDASRGEF 334
Query: 62 EAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKISY 121
EAG Q EH LL +LG+ QL V VNKMD + + F+EI+ ++ ++K+ +
Sbjct: 335 EAGFETGGQTREHGLLVRSLGVTQLAVAVNKMD--QVNWQQERFQEITGKLGHFLKQAGF 392
Query: 122 NSQTLPFVPISGWHGDNML 140
+ F+P SG G+N++
Sbjct: 393 KESDVGFIPTSGLSGENLI 411
>gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1
[Homo sapiens]
Length = 684
Score = 68.6 bits (166), Expect = 2e-12
Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 32/139 (23%)
Query: 2 GHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGEC 61
GH DFI NMIT G +QA D AVL+V + GE
Sbjct: 347 GHKDFIPNMIT------------------GAAQA------------DVAVLVVDASRGEF 376
Query: 62 EAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKISY 121
EAG Q EH LL +LG+ QL V VNKMD + + F+EI+ ++ ++K+ +
Sbjct: 377 EAGFETGGQTREHGLLVRSLGVTQLAVAVNKMD--QVNWQQERFQEITGKLGHFLKQAGF 434
Query: 122 NSQTLPFVPISGWHGDNML 140
+ F+P SG G+N++
Sbjct: 435 KESDVGFIPTSGLSGENLI 453
>gi|34147630 Tu translation elongation factor, mitochondrial
precursor [Homo sapiens]
Length = 455
Score = 40.4 bits (93), Expect = 6e-04
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 40/128 (31%)
Query: 2 GHCDFIKNMITVTLQLPPGLPRPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGEC 61
GH D++KNMIT T L D +L+VA+ G
Sbjct: 132 GHADYVKNMITGTAPL------------------------------DGCILVVAANDGPM 161
Query: 62 EAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEEISKEVKAYIKKISY 121
Q EH LLA +G++ ++V VNK D + S E + E++ + + Y
Sbjct: 162 P-------QTREHLLLARQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFGY 211
Query: 122 NSQTLPFV 129
+ P +
Sbjct: 212 KGEETPVI 219
>gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens]
Length = 894
Score = 29.6 bits (65), Expect = 1.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 3 HCDFIKNMITVTLQLPPGLPRPCC------GDG-QGVSQARSELG--LPLSGQED 48
H I + + LPP LP PCC GDG QG Q + G LSG+++
Sbjct: 163 HSSVITSPLRALGALPPCLPLPCCSARPVSGDGTQGEGQTEAPFGCQCQLSGKDE 217
>gi|115495445 ankyrin repeat domain 30A [Homo sapiens]
Length = 1341
Score = 28.9 bits (63), Expect = 1.9
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 68 NKQICEHTLLAYTLGMKQLI-------VTVNKMDI---TEPPYSSTC-FEEISKEVKAYI 116
NK C +LA G +++ V V DI T Y+ TC F I +++ YI
Sbjct: 146 NKYKCTALMLAVCHGSSEIVGMLLQQNVDVFAADICGVTAEHYAVTCGFHHIHEQIMEYI 205
Query: 117 KKISYNSQ 124
+K+S N Q
Sbjct: 206 RKLSKNHQ 213
>gi|4503507 eukaryotic translation initiation factor 2, subunit 3
gamma, 52kDa [Homo sapiens]
Length = 472
Score = 28.1 bits (61), Expect = 3.2
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 48 DCAVLIVASGVGECEAGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFEE 107
D A+L++A G C Q EH + +K +++ NK+D+ + + +E+
Sbjct: 153 DAALLLIA-GNESCP-----QPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQ 206
Query: 108 ISKEVKAYIKKISYNSQTLPFVPIS 132
I V+ + ++ P +PIS
Sbjct: 207 ILAFVQGTV------AEGAPIIPIS 225
>gi|14150141 programmed cell death 2-like [Homo sapiens]
Length = 358
Score = 28.1 bits (61), Expect = 3.2
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 28 DGQGVSQARSELGLPLSGQEDCAVLIVASGVGECEAGISKNKQICEHTLLAYTLGMKQLI 87
+G + Q S+ LP G E I+ SG + K C+ +L Y+ + L
Sbjct: 218 EGIAMDQLLSQ-SLPNDGDEKYEKTIIKSG-DQTFYKFMKRIAACQEQILRYSWSGEPLF 275
Query: 88 VTVNKMDITEPPYSSTC 104
+T ++TE P S C
Sbjct: 276 LTCPTSEVTELPACSQC 292
>gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo
sapiens]
Length = 209
Score = 26.6 bits (57), Expect = 9.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 23 RPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGEC 61
R C +G+GV R L P SG C V + G C
Sbjct: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARC 159
>gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo
sapiens]
Length = 209
Score = 26.6 bits (57), Expect = 9.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 23 RPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGEC 61
R C +G+GV R L P SG C V + G C
Sbjct: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARC 159
>gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo
sapiens]
Length = 209
Score = 26.6 bits (57), Expect = 9.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 23 RPCCGDGQGVSQARSELGLPLSGQEDCAVLIVASGVGEC 61
R C +G+GV R L P SG C V + G C
Sbjct: 121 RLCLREGEGVLWRRFPLTPPPSGSWACRVSAMGEGCARC 159
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 26.6 bits (57), Expect = 9.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 63 AGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFE 106
+ I+ K++C H L Y +++ V +D+ P YSS E
Sbjct: 448 SSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALE 491
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 26.6 bits (57), Expect = 9.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 63 AGISKNKQICEHTLLAYTLGMKQLIVTVNKMDITEPPYSSTCFE 106
+ I+ K++C H L Y +++ V +D+ P YSS E
Sbjct: 448 SSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALE 491
>gi|149192843 hypothetical protein LOC54627 [Homo sapiens]
Length = 1047
Score = 26.6 bits (57), Expect = 9.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 3 HCDFIKN-MITVTLQLPPGLPRP 24
HC ++ + T+ LQLPPG P P
Sbjct: 247 HCRLLRTPLATLLLQLPPGRPTP 269
>gi|116268109 nucleotide-binding oligomerization domains 27 [Homo
sapiens]
Length = 1866
Score = 26.6 bits (57), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 58 VGECEAGISKNKQICEHTLLAYTLGMKQLIVTVN 91
V G+SK+ Q+ E TL LG KQL + ++
Sbjct: 1340 VSRLATGLSKSLQLTELTLTQCCLGQKQLAILLS 1373
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,662,447
Number of Sequences: 37866
Number of extensions: 283986
Number of successful extensions: 729
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 27
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.